Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8401165.1

Orthogroup ID

OG0000932

Physical Location & Seq

Genomic Coordinates Reverse (-)

40 .. 867

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8401165.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgaacataaggattagaagaaattttgcatttattcaatatgaatcacaggaggatgctaccaaagcattggatgcaacaaattcaagcaagttcatggaccgcgttatttcagtggagtatgctgttcgtgatgatgatgatagaagaaatggccacagtcctgatagaaggggccgtgatacgtctcctgagaggagaagaagcaatgatcgtgggcgatctccaagtccataccgcagagatagggctagtccggattatggccatggttcccgtcagaattctagagctgaaccaagaagaagtcctgagtatgatagagctccaagaagaagtcctgattatgagagagccgcaagcccagtcaatgatagataccacaggtttgacaaagatctgaactctttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 RrnaAD

Protein Analysis

137

Amino Acids

16.22

Weight (kDa)

10.11

Isoelectric Point (pI)

93.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040
fragaria_vesca	FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991
malus_domestica	MD01G1051400.v1.1 MD01G1196700.v1.1 MD07G1128300.v1.1 MD07G1264000.v1.1
prunus_persica	Prupe.2G154900_v2.0.a1 Prupe.2G154900_v2.0.a1 Prupe.2G154900_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1
pyrus_communis	pycom01g07610 pycom07g12390 pycom07g24260
rosa_chinensis	RchiOBHm_Chr1g0352321 RchiOBHm_Chr1g0376701
rosa_laevigata	RLG00000026578 RLG00000028343
rosa_multiflora	Rmu_co8401165.1_g000001 Rmu_sc0009691.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281870 Rroxscaffold_4G00303030
rosa_rugosa	Rorug01G0226500 Rorug01G0226600 Rorug01G0226700 Rorug01G0226700 Rorug01G0397600
rosa_samantha	Rh1AG241000 Rh1AG414700 Rh1BG211800 Rh1BG374100 Rh1CG224800 Rh1CG388000 Rh1DG238200 Rh1DG404900
rosa_wichuraiana	Rw1G020870 Rw1G020950 Rw1G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	256
AciI	CCGC	3 cut(s)	103, 238, 357
AcoI	YGGCCR	2 cut(s)	154, 265
AcsI	RAATTY	3 cut(s)	22, 82, 283
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	38, 87
AluBI	AGCT	2 cut(s)	293, 326
AluI	AGCT	2 cut(s)	293, 326
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	1 cut(s)	192
Aor13HI	TCCGGA	1 cut(s)	256
AoxI	GGCC	3 cut(s)	154, 175, 265
ApoI	RAATTY	3 cut(s)	22, 82, 283
AspS9I	GGNCC	2 cut(s)	100, 175
AvaII	GGWCC	1 cut(s)	100
BalI	TGGCCA	2 cut(s)	156, 267
BanII	GRGCYC	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	328
BceAI	ACGGC	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	2 cut(s)	252, 288
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	100, 175
BmiI	GGNNCC	2 cut(s)	176, 274
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	2 cut(s)	46, 64
BmuI	ACTGGG	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	268
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	365
Bse3DI	GCAATG	1 cut(s)	214
BseAI	TCCGGA	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	2 cut(s)	61, 79
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	2 cut(s)	183, 303
BseNI	ACTGG	1 cut(s)	365
BseRI	GAGGAG	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	3 cut(s)	156, 177, 267
BsiHKAI	GWGCWC	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	1 cut(s)	192
BsmBI	CGTCTC	1 cut(s)	192
BsnI	GGCC	3 cut(s)	156, 177, 267
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp13I	TCCGGA	1 cut(s)	256
Bsp143I	GATC	3 cut(s)	211, 221, 397
Bsp19I	CCATGG	1 cut(s)	268
BspACI	CCGC	3 cut(s)	103, 238, 357
BspANI	GGCC	3 cut(s)	156, 177, 267
BspCNI	CTCAG	2 cut(s)	184, 304
BspEI	TCCGGA	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	176, 274
BsrDI	GCAATG	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	3 cut(s)	211, 221, 397
BssT1I	CCWWGG	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	2 cut(s)	192, 312
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	2 cut(s)	61, 79
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	3 cut(s)	214, 224, 400
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	3 cut(s)	211, 221, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 74
BstUI	CGCG	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	397
BstXI	CCANNNNNNTGG	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	397
BsuRI	GGCC	3 cut(s)	156, 177, 267
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	61, 79
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	361
Cfr13I	GGNCC	2 cut(s)	100, 175
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	2 cut(s)	97, 269
CviJI	RGCY	8 cut(s)	156, 177, 251, 267, 293, 326, 356, 363
CviKI_1	RGCY	8 cut(s)	156, 177, 251, 267, 293, 326, 356, 363
DdeI	CTNAG	2 cut(s)	192, 312
DpnI	GATC	3 cut(s)	213, 223, 399
DpnII	GATC	3 cut(s)	211, 221, 397
EaeI	YGGCCR	2 cut(s)	154, 265
Ecl136II	GAGCTC	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	326
EcoRI	GAATTC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	268
Esp3I	CGTCTC	1 cut(s)	192
FaeI	CATG	2 cut(s)	100, 272
FaiI	YATR	9 cut(s)	8, 42, 98, 123, 235, 264, 270, 318, 348
FatI	CATG	2 cut(s)	96, 268
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	2 cut(s)	68, 86
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	1 cut(s)	357
FspBI	CTAG	2 cut(s)	252, 288
GluI	GCNGC	1 cut(s)	357
HaeIII	GGCC	3 cut(s)	156, 177, 267
HapII	CCGG	1 cut(s)	257
Hin1II	CATG	2 cut(s)	100, 272
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	282, 402
Hpy188III	TCNNGA	7 cut(s)	131, 164, 191, 257, 288, 311, 341
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	29, 77
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 74
HpyF3I	CTNAG	2 cut(s)	192, 312
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	2 cut(s)	100, 272
Kpn2I	TCCGGA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	211, 221, 397
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	8 cut(s)	35, 177, 204, 270, 324, 354, 370, 378
LweI	GCATC	2 cut(s)	46, 64
MaeI	CTAG	2 cut(s)	252, 288
MaeII	ACGT	1 cut(s)	185
MalI	GATC	3 cut(s)	213, 223, 399
MboI	GATC	3 cut(s)	211, 221, 397
MboII	GAAGA	5 cut(s)	30, 159, 213, 315, 345
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	328
MlsI	TGGCCA	2 cut(s)	156, 267
MluCI	AATT	3 cut(s)	22, 82, 283
MluNI	TGGCCA	2 cut(s)	156, 267
MnlI	CCTC	2 cut(s)	46, 189
Mox20I	TGGCCA	2 cut(s)	156, 267
MroI	TCCGGA	1 cut(s)	256
MscI	TGGCCA	2 cut(s)	156, 267
MseI	TTAA	1 cut(s)	412
Msp20I	TGGCCA	2 cut(s)	156, 267
MspI	CCGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	2 cut(s)	65, 74
NcoI	CCATGG	1 cut(s)	268
NdeII	GATC	3 cut(s)	211, 221, 397
NlaIII	CATG	2 cut(s)	100, 272
NlaIV	GGNNCC	2 cut(s)	176, 274
PfeI	GAWTC	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	358
Psp124BI	GAGCTC	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	176, 274
PspPI	GGNCC	2 cut(s)	100, 175
PsuI	RGATCY	1 cut(s)	397
SacI	GAGCTC	1 cut(s)	328
SaqAI	TTAA	1 cut(s)	412
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	3 cut(s)	211, 221, 397
Sau96I	GGNCC	2 cut(s)	100, 175
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	4 cut(s)	188, 295, 328, 389
SfaNI	GCATC	2 cut(s)	46, 64
SinI	GGWCC	1 cut(s)	100
Sse9I	AATT	3 cut(s)	22, 82, 283
SsiI	CCGC	3 cut(s)	103, 238, 357
SspMI	CTAG	2 cut(s)	252, 288
SstI	GAGCTC	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	1 cut(s)	188
TasI	AATT	3 cut(s)	22, 82, 283
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	412
Tru9I	TTAA	1 cut(s)	412
TscAI	CASTG	1 cut(s)	120
TspDTI	ATGAA	3 cut(s)	17, 57, 85
TspRI	CASTG	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	3 cut(s)	22, 82, 283
XbaI	TCTAGA	1 cut(s)	287
XspI	CTAG	2 cut(s)	252, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.