Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000932

Physical Location & Seq

Genomic Coordinates Forward (+)

64270010 .. 64273985

Gene Structure 3976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G036370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGTCAAGGTATCCAGTCATGAGCGTGGTTCTAGAAGACCTGGTGCTTCAAGAAGGTCTTCAACTAATACAAGGCCGTCAAAGACCTTGTTTGTTATAAATTTTGATCCATATCACACCAGGACCAAGGATTTGGAGAGGCATTTTGATCCATATGGGAAAATAATAAGTGTAAGGATCCGAAGGAATTTCGCTTTTGTTCAGTATGAGTCACAGGAGGATGCTACTAGGGCACTGGAGGCTACAAACATGAGCAAGCTGATGGACCGAGTTATATCGGTTGAATATGCAGTTCGTGATGATGATGAAAGAAGAGATGGCTATAGCCCTGACAGGAGAAGTCGTGATAGGTCACTAGAGAGAGGCCGTGACAGAAGAAGATCCCCAAGTCCCTACAAAAGAGAGAGGGGTAGCCCTGATTATGGCCGTGGCCCTAGCCCTGGTCCGTACCGGAGGGAGAGGGGTAGTCCTGATTATGGACGTGGCACAAGTCCTTACCGAAGGGAGAGAGCAAGCCCTGACTATGCCCGTGGGCGCAGCCCAAGTCCTTATAGGAGGGAGAGATCTGATCGTGGGAGGGTCTCCAGTCGTAGTCCCCGAAAAGAGAGGGTGAGTGTTGATCATGGCCGTGATCGCAGCCGCAGCCGCAGCCGTAGTCCTTATGTTGGAAGAGATAGGGCTGTTGCTGAAAATGGCCATGCTCCAAGTCCTAGTCCTCCTCCTTATAAGAGAGCTAGAGTTAGCCCTGAAAATGGTCATGGTCCCAGCAGTAGCCCTTATGAAGGAGAGAGGGCCAACAGCCCCGAAGAAGGTCGTATTCCAAGTCCCAACTCTGTGCCCGATGGCAAGGACAGCCCCAATTATGGTGGGCCTGAAAGCCCCATGCATGAGAGATATAACAGCCGTTCACCCCAAGCTGAGGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010445 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019222 GO:0031047 GO:0031050 GO:0031053 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

309

Amino Acids

35.39

Weight (kDa)

10.46

Isoelectric Point (pI)

93.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	30 - 92	3.1e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040
fragaria_vesca	FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991
malus_domestica	MD01G1051400.v1.1 MD01G1196700.v1.1 MD07G1128300.v1.1 MD07G1264000.v1.1
prunus_persica	Prupe.2G154900_v2.0.a1 Prupe.2G154900_v2.0.a1 Prupe.2G154900_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1
pyrus_communis	pycom01g07610 pycom07g12390 pycom07g24260
rosa_chinensis	RchiOBHm_Chr1g0352321 RchiOBHm_Chr1g0376701
rosa_laevigata	RLG00000026578 RLG00000028343
rosa_multiflora	Rmu_co8401165.1_g000001 Rmu_sc0009691.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281870 Rroxscaffold_4G00303030
rosa_rugosa	Rorug01G0226500 Rorug01G0226600 Rorug01G0226700 Rorug01G0226700 Rorug01G0397600
rosa_samantha	Rh1AG241000 Rh1AG414700 Rh1BG211800 Rh1BG374100 Rh1CG224800 Rh1CG388000 Rh1DG238200 Rh1DG404900
rosa_wichuraiana	Rw1G020870 Rw1G020950 Rw1G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	98, 726
AciI	CCGC	2 cut(s)	640, 646
AclWI	GGATC	5 cut(s)	101, 143, 172, 185, 375
AcoI	YGGCCR	3 cut(s)	424, 625, 694
AcsI	RAATTY	2 cut(s)	100, 187
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	9 cut(s)	422, 440, 476, 665, 752, 782, 809, 863, 919
AgsI	TTSAA	3 cut(s)	51, 63, 284
AjiI	CACGTC	1 cut(s)	482
AjnI	CCWGG	3 cut(s)	40, 119, 439
AluBI	AGCT	3 cut(s)	259, 734, 917
AluI	AGCT	3 cut(s)	259, 734, 917
Alw26I	GTCTC	1 cut(s)	586
AlwI	GGATC	5 cut(s)	101, 143, 172, 185, 375
AoxI	GGCC	8 cut(s)	74, 364, 424, 430, 625, 694, 792, 869
ApeKI	GCWGC	4 cut(s)	537, 636, 642, 648
ApoI	RAATTY	2 cut(s)	100, 187
ArsI	GACNNNNNNTTYG	2 cut(s)	115, 147
Asp700I	GAANNNNTTC	1 cut(s)	58
AspLEI	GCGC	1 cut(s)	537
AspS9I	GGNCC	7 cut(s)	123, 265, 431, 443, 761, 792, 869
AsuHPI	GGTGA	2 cut(s)	622, 900
AvaII	GGWCC	4 cut(s)	123, 265, 443, 761
BaeGI	GKGCMC	2 cut(s)	235, 840
BalI	TGGCCA	1 cut(s)	696
BamHI	GGATCC	1 cut(s)	177
BbsI	GAAGAC	2 cut(s)	43, 51
BbvCI	CCTCAGC	1 cut(s)	918
BbvI	GCAGC	4 cut(s)	549, 648, 654, 660
BccI	CCATC	3 cut(s)	256, 311, 836
BceAI	ACGGC	6 cut(s)	61, 351, 411, 612, 636, 888
BciT130I	CCWGG	3 cut(s)	42, 121, 441
BciVI	GTATCC	1 cut(s)	22
BclI	TGATCA	1 cut(s)	619
BcoDI	GTCTC	1 cut(s)	586
BfaI	CTAG	6 cut(s)	33, 228, 356, 435, 711, 735
BfmI	CTRYAG	1 cut(s)	322
BfuI	GTATCC	1 cut(s)	22
BglII	AGATCT	1 cut(s)	563
BisI	GCNGC	6 cut(s)	538, 637, 640, 643, 646, 649
BlsI	GCNGC	6 cut(s)	539, 638, 641, 644, 647, 650
Bme1390I	CCNGG	3 cut(s)	42, 121, 441
Bme18I	GGWCC	4 cut(s)	123, 265, 443, 761
BmgBI	CACGTC	1 cut(s)	482
BmgT120I	GGNCC	7 cut(s)	123, 265, 431, 443, 761, 792, 869
BmiI	GGNNCC	2 cut(s)	179, 763
BmrFI	CCNGG	3 cut(s)	42, 121, 441
BmsI	GCATC	1 cut(s)	211
BpiI	GAAGAC	2 cut(s)	43, 51
BpmI	CTGGAG	2 cut(s)	257, 568
Bpu10I	CCTNAGC	1 cut(s)	918
BsaBI	GATNNNNATC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	586
BsaJI	CCNNGG	4 cut(s)	126, 427, 439, 529
BsaWI	WCCGGW	1 cut(s)	450
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	9 cut(s)	422, 440, 476, 665, 752, 782, 809, 863, 919
Bse1I	ACTGG	3 cut(s)	15, 240, 585
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	3 cut(s)	42, 121, 441
BseDI	CCNNGG	4 cut(s)	126, 427, 439, 529
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	9 cut(s)	422, 440, 476, 665, 752, 782, 809, 863, 919
BseMII	CTCAG	1 cut(s)	909
BseNI	ACTGG	3 cut(s)	15, 240, 585
BseRI	GAGGAG	1 cut(s)	708
BseSI	GKGCMC	2 cut(s)	235, 840
BseXI	GCAGC	4 cut(s)	549, 648, 654, 660
BseYI	CCCAGC	1 cut(s)	764
BshFI	GGCC	8 cut(s)	76, 366, 426, 432, 627, 696, 794, 871
BsiSI	CCGG	1 cut(s)	451
BslFI	GGGAC	4 cut(s)	375, 579, 747, 810
BslI	CCNNNNNNNGG	9 cut(s)	422, 440, 476, 665, 752, 782, 809, 863, 919
BsmAI	GTCTC	1 cut(s)	586
BsmFI	GGGAC	4 cut(s)	375, 579, 747, 810
BsnI	GGCC	8 cut(s)	76, 366, 426, 432, 627, 696, 794, 871
Bso31I	GGTCTC	1 cut(s)	586
Bsp1286I	GDGCHC	2 cut(s)	235, 840
Bsp143I	GATC	8 cut(s)	106, 148, 177, 380, 563, 568, 619, 631
BspACI	CCGC	2 cut(s)	640, 646
BspANI	GGCC	8 cut(s)	76, 366, 426, 432, 627, 696, 794, 871
BspCNI	CTCAG	1 cut(s)	910
BspHI	TCATGA	1 cut(s)	19
BspLI	GGNNCC	2 cut(s)	179, 763
BspPI	GGATC	5 cut(s)	101, 143, 172, 185, 375
BspTNI	GGTCTC	1 cut(s)	586
BsrI	ACTGG	3 cut(s)	15, 240, 585
BssECI	CCNNGG	4 cut(s)	126, 427, 439, 529
BssMI	GATC	8 cut(s)	106, 148, 177, 380, 563, 568, 619, 631
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	3 cut(s)	42, 121, 441
Bst6I	CTCTTC	2 cut(s)	307, 664
BstC8I	GCNNGC	2 cut(s)	257, 514
BstDEI	CTNAG	1 cut(s)	918
BstDSI	CCRYGG	2 cut(s)	427, 529
BstENI	CCTNNNNNAGG	1 cut(s)	780
BstF5I	GGATG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	537
BstKTI	GATC	8 cut(s)	109, 151, 180, 383, 566, 571, 622, 634
BstMAI	GTCTC	1 cut(s)	586
BstMBI	GATC	8 cut(s)	106, 148, 177, 380, 563, 568, 619, 631
BstMWI	GCNNNNNNNGC	7 cut(s)	230, 239, 633, 642, 645, 648, 852
BstNI	CCWGG	3 cut(s)	42, 121, 441
BstSCI	CCNGG	3 cut(s)	40, 119, 439
BstSFI	CTRYAG	1 cut(s)	322
BstSLI	GKGCMC	2 cut(s)	235, 840
BstV1I	GCAGC	4 cut(s)	549, 648, 654, 660
BstV2I	GAAGAC	2 cut(s)	43, 51
BstX2I	RGATCY	3 cut(s)	177, 380, 563
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	3 cut(s)	177, 380, 563
BsuI	GTATCC	1 cut(s)	22
BsuRI	GGCC	8 cut(s)	76, 366, 426, 432, 627, 696, 794, 871
BtgI	CCRYGG	2 cut(s)	427, 529
BtrI	CACGTC	1 cut(s)	482
BtsCI	GGATG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	233
Cac8I	GCNNGC	2 cut(s)	257, 514
CciI	TCATGA	1 cut(s)	19
CfoI	GCGC	1 cut(s)	537
Cfr13I	GGNCC	7 cut(s)	123, 265, 431, 443, 761, 792, 869
CsiI	ACCWGGT	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	448
CspCI	CAANNNNNGTGG	2 cut(s)	847, 882
CviAII	CATG	7 cut(s)	20, 250, 623, 698, 758, 883, 887
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	1 cut(s)	918
DpnI	GATC	8 cut(s)	108, 150, 179, 382, 565, 570, 621, 633
DpnII	GATC	8 cut(s)	106, 148, 177, 380, 563, 568, 619, 631
EaeI	YGGCCR	3 cut(s)	424, 625, 694
Eam1104I	CTCTTC	2 cut(s)	307, 664
EarI	CTCTTC	2 cut(s)	307, 664
Eco130I	CCWWGG	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	586
Eco47I	GGWCC	4 cut(s)	123, 265, 443, 761
EcoNI	CCTNNNNNAGG	1 cut(s)	780
EcoRII	CCWGG	3 cut(s)	40, 119, 439
EcoT14I	CCWWGG	1 cut(s)	126
EcoT22I	ATGCAT	1 cut(s)	888
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	7 cut(s)	23, 253, 626, 701, 761, 886, 890
FalI	AAGNNNNNCTT	2 cut(s)	43, 75
FaqI	GGGAC	4 cut(s)	375, 579, 747, 810
FatI	CATG	7 cut(s)	19, 249, 622, 697, 757, 882, 886
FauNDI	CATATG	1 cut(s)	154
FbaI	TGATCA	1 cut(s)	619
Fnu4HI	GCNGC	6 cut(s)	538, 637, 640, 643, 646, 649
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	6 cut(s)	538, 637, 640, 643, 646, 649
FspBI	CTAG	6 cut(s)	33, 228, 356, 435, 711, 735
GlaI	GCGC	1 cut(s)	536
GluI	GCNGC	6 cut(s)	538, 637, 640, 643, 646, 649
GsaI	CCCAGC	1 cut(s)	768
GsuI	CTGGAG	2 cut(s)	257, 568
HaeIII	GGCC	8 cut(s)	76, 366, 426, 432, 627, 696, 794, 871
HapII	CCGG	1 cut(s)	451
HhaI	GCGC	1 cut(s)	537
Hin1II	CATG	7 cut(s)	23, 253, 626, 701, 761, 886, 890
Hin6I	GCGC	1 cut(s)	535
HinP1I	GCGC	1 cut(s)	535
HinfI	GANTC	1 cut(s)	209
HpaII	CCGG	1 cut(s)	451
HphI	GGTGA	2 cut(s)	622, 900
Hpy166II	GTNNAC	1 cut(s)	908
Hpy188I	TCNGA	2 cut(s)	182, 568
Hpy188III	TCNNGA	6 cut(s)	20, 33, 51, 296, 344, 470
Hpy8I	GTNNAC	1 cut(s)	908
HpyAV	CCTTC	5 cut(s)	48, 177, 495, 776, 803
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	2 cut(s)	290, 886
HpyF10VI	GCNNNNNNNGC	7 cut(s)	230, 239, 633, 642, 645, 648, 852
HpyF3I	CTNAG	1 cut(s)	918
HpySE526I	ACGT	1 cut(s)	481
Hsp92II	CATG	7 cut(s)	23, 253, 626, 701, 761, 886, 890
HspAI	GCGC	1 cut(s)	535
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	8 cut(s)	106, 148, 177, 380, 563, 568, 619, 631
LmnI	GCTCC	1 cut(s)	706
Lsp1109I	GCAGC	4 cut(s)	549, 648, 654, 660
LweI	GCATC	1 cut(s)	211
MabI	ACCWGGT	1 cut(s)	40
MaeI	CTAG	6 cut(s)	33, 228, 356, 435, 711, 735
MaeII	ACGT	1 cut(s)	481
MaeIII	GTNAC	3 cut(s)	210, 351, 368
MalI	GATC	8 cut(s)	108, 150, 179, 382, 565, 570, 621, 633
MboI	GATC	8 cut(s)	106, 148, 177, 380, 563, 568, 619, 631
MboII	GAAGA	7 cut(s)	48, 51, 324, 387, 390, 681, 818
MflI	RGATCY	3 cut(s)	177, 380, 563
MhlI	GDGCHC	2 cut(s)	235, 840
MlsI	TGGCCA	1 cut(s)	696
MluCI	AATT	3 cut(s)	100, 187, 859
MluNI	TGGCCA	1 cut(s)	696
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	646
Mox20I	TGGCCA	1 cut(s)	696
Mph1103I	ATGCAT	1 cut(s)	888
MroXI	GAANNNNTTC	1 cut(s)	58
MscI	TGGCCA	1 cut(s)	696
MslI	CAYNNNNRTG	2 cut(s)	24, 627
Msp20I	TGGCCA	1 cut(s)	696
MspI	CCGG	1 cut(s)	451
MspR9I	CCNGG	3 cut(s)	42, 121, 441
MvaI	CCWGG	3 cut(s)	42, 121, 441
MwoI	GCNNNNNNNGC	7 cut(s)	230, 239, 633, 642, 645, 648, 852
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	8 cut(s)	106, 148, 177, 380, 563, 568, 619, 631
NlaIII	CATG	7 cut(s)	23, 253, 626, 701, 761, 886, 890
NlaIV	GGNNCC	2 cut(s)	179, 763
NmuCI	GTSAC	3 cut(s)	210, 351, 368
NsiI	ATGCAT	1 cut(s)	888
PagI	TCATGA	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	595
PdmI	GAANNNNTTC	1 cut(s)	58
PkrI	GCNGC	6 cut(s)	539, 638, 641, 644, 647, 650
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PsiI	TTATAA	2 cut(s)	98, 726
Psp6I	CCWGG	3 cut(s)	40, 119, 439
PspFI	CCCAGC	1 cut(s)	764
PspGI	CCWGG	3 cut(s)	40, 119, 439
PspN4I	GGNNCC	2 cut(s)	179, 763
PspPI	GGNCC	7 cut(s)	123, 265, 431, 443, 761, 792, 869
PsuI	RGATCY	3 cut(s)	177, 380, 563
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
RseI	CAYNNNNRTG	2 cut(s)	24, 627
SatI	GCNGC	6 cut(s)	538, 637, 640, 643, 646, 649
Sau3AI	GATC	8 cut(s)	106, 148, 177, 380, 563, 568, 619, 631
Sau96I	GGNCC	7 cut(s)	123, 265, 431, 443, 761, 792, 869
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	3 cut(s)	42, 121, 441
SduI	GDGCHC	2 cut(s)	235, 840
SexAI	ACCWGGT	1 cut(s)	40
SfaNI	GCATC	1 cut(s)	211
SfcI	CTRYAG	1 cut(s)	322
SinI	GGWCC	4 cut(s)	123, 265, 443, 761
SmiMI	CAYNNNNRTG	2 cut(s)	24, 627
Sse9I	AATT	3 cut(s)	100, 187, 859
SsiI	CCGC	2 cut(s)	640, 646
SspMI	CTAG	6 cut(s)	33, 228, 356, 435, 711, 735
StyD4I	CCNGG	3 cut(s)	40, 119, 439
StyI	CCWWGG	1 cut(s)	126
TaiI	ACGT	1 cut(s)	484
TaqII	GACCGA	1 cut(s)	282
TasI	AATT	3 cut(s)	100, 187, 859
TauI	GCSGC	2 cut(s)	642, 648
TscAI	CASTG	1 cut(s)	240
TseFI	GTSAC	3 cut(s)	210, 351, 368
TseI	GCWGC	4 cut(s)	537, 636, 642, 648
Tsp45I	GTSAC	3 cut(s)	210, 351, 368
TspDTI	ATGAA	2 cut(s)	321, 795
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	1 cut(s)	240
VpaK11BI	GGWCC	4 cut(s)	123, 265, 443, 761
XagI	CCTNNNNNAGG	1 cut(s)	780
XapI	RAATTY	2 cut(s)	100, 187
XbaI	TCTAGA	1 cut(s)	32
XmnI	GAANNNNTTC	1 cut(s)	58
XspI	CTAG	6 cut(s)	33, 228, 356, 435, 711, 735
Zsp2I	ATGCAT	1 cut(s)	888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.