Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002717

Physical Location & Seq

Genomic Coordinates Reverse (-)

18695940 .. 18698571

Gene Structure 2632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1157300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGATGTGGACTCATCGTCGATGGTGCCGGACACTGATCACGATCCGGCAGTGCCAAACCACAGTACGACGTCGTCTCAGGCCGCAGTAGAAGGGGAACAACAGCTTGGCGAGCAGGCGCAACCGGGAACTGGATCTCCTCCGCAGCAGCCTCAGACAGCGGCTGCTCCACAGGCACCACAGACTCCGGTGGCGGGACCGCGGCACGCCCCAACGTACTCGGTGGTCAATGCAATTTTAGAGAAAAAAGAGGATGGTCCAGGGCCAAGATGTGGCCACACGTTGACTGCGGTGGCGGCTGTGGGCGAGGAGGGCACGCCGGGCTACTTTGGCCCCAGGTTGATTTTATTTGGTGGTGCCACAGCTCTTGAGGGCAATTCGGCGGCTTCAGGGACTCCATCATCAGCTGGAAGTGCCGGCATAAGACTTGCAGGTGCCACAGCGGACGTGCATTGTTATGACGTGCTAACAAATAAATGGTCTAGGATCACACCCTTTGGAGAACCTCCCACCCCAAGGGCTGCACATGTAGCAACAGCTGTAGGAACTATGGTGGTTATTCAGGGTGGAATTGGTCCTGCTGGTTTGTCTGCTGAGGATCTTCATGTTCTTGACCTCACACAGCAACGGCCTCGATGGCACAGGGTTGTTGTTCAAGGCCCTGGACCTGGGCCACGCTATGGACATGTGATGGCATTAGTGGGGCAAAGATATCTTATGGCAATTGGTGGTAATGATGGAAAACGGCCTTTAGCTGATGTTTGGGCTCTCGACACAGCTGCCAAACCTTATGAATGGCGTAAGTTGGAACCAGAGGGGGAGGGTCCACCACCATGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0016020 GO:0044424 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_2 Kelch_4 Metallophos

Protein Analysis

281

Amino Acids

28.93

Weight (kDa)

5.55

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_KLHDC2_KLHL20_DRC7	PF24681	82 - 279	8.6e-29	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42	PF13415	83 - 261	4.3e-24	FBX42, beta-propeller domain
Kelch_HCF	PF13854	145 - 251	7.2e-07	Host cell factor, Kelch-repeats domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08420 AT1G08420 AT2G27210 AT2G27210
fragaria_vesca	FvH4_3g26300
malus_domestica	MD03G1156600.v1.1 MD03G1157300.v1.1 MD11G1174100.v1.1
prunus_persica	Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1
pyrus_communis	pycom03g11040 pycom11g14860
rosa_chinensis	RchiOBHm_Chr5g0048611 RchiOBHm_Chr7g0219991 RchiOBHm_Chr7g0220001
rosa_laevigata	RLG00000034543
rosa_multiflora	Rmu_co8183230.1_g000001 Rmu_co8284673.1_g000001 Rmu_sc0005838.1_g000012 Rmu_sc0005838.1_g000013 Rmu_sc0007553.1_g000001 Rmu_sc0008151.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033170 Rroxscaffold_3G00239830
rosa_rugosa	Rorug05G0240500 Rorug07G0188300
rosa_samantha	Rh5AG319700 Rh5CG355900 Rh7AG332100 Rh7CG349500 Rh7CG349600 Rh7DG327700 Rh7DG327800
rosa_wichuraiana	Rw0G021290 Rw5G029900 Rw7G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	422
AatII	GACGTC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	422
AccB1I	GGYRCC	4 cut(s)	25, 175, 356, 434
AccB7I	CCANNNNNTGG	2 cut(s)	272, 680
AccII	CGCG	1 cut(s)	202
AclWI	GGATC	4 cut(s)	38, 142, 494, 606
AcoI	YGGCCR	1 cut(s)	274
AcuI	CTGAAG	1 cut(s)	372
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	2 cut(s)	67, 218
AfiI	CCNNNNNNNGG	6 cut(s)	131, 194, 272, 516, 668, 680
AflIII	ACRYGT	3 cut(s)	279, 526, 685
AgsI	TTSAA	1 cut(s)	656
AhdI	GACNNNNNGTC	1 cut(s)	16
AjiI	CACGTC	2 cut(s)	448, 463
AjnI	CCWGG	4 cut(s)	259, 335, 661, 667
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AloI	GAACNNNNNNTCC	2 cut(s)	121, 153
AluBI	AGCT	6 cut(s)	106, 365, 407, 539, 755, 779
AluI	AGCT	6 cut(s)	106, 365, 407, 539, 755, 779
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	4 cut(s)	38, 142, 494, 606
AlwNI	CAGNNNCTG	1 cut(s)	164
AoxI	GGCC	8 cut(s)	81, 263, 274, 331, 629, 658, 671, 746
ApeKI	GCWGC	5 cut(s)	145, 148, 164, 521, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	9 cut(s)	197, 257, 263, 332, 575, 659, 665, 671, 824
AsuC2I	CCSGG	2 cut(s)	126, 321
AvaII	GGWCC	5 cut(s)	197, 257, 575, 665, 824
BaeGI	GKGCMC	1 cut(s)	317
BalI	TGGCCA	1 cut(s)	276
BanI	GGYRCC	4 cut(s)	25, 175, 356, 434
BanII	GRGCYC	1 cut(s)	769
BbvCI	CCTCAGC	1 cut(s)	594
BbvI	GCAGC	5 cut(s)	151, 157, 160, 508, 766
BccI	CCATC	6 cut(s)	16, 248, 406, 630, 685, 731
BceAI	ACGGC	2 cut(s)	644, 761
BcgI	CGANNNNNNTGC	4 cut(s)	614, 648, 761, 795
BciT130I	CCWGG	4 cut(s)	261, 337, 663, 669
BclI	TGATCA	1 cut(s)	37
BcnI	CCSGG	2 cut(s)	126, 321
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	1 cut(s)	540
BfuAI	ACCTGC	1 cut(s)	422
BglI	GCCNNNNNGGC	1 cut(s)	637
Bme1390I	CCNGG	6 cut(s)	126, 261, 321, 337, 663, 669
Bme18I	GGWCC	5 cut(s)	197, 257, 575, 665, 824
BmeRI	GACNNNNNGTC	1 cut(s)	16
BmgBI	CACGTC	2 cut(s)	448, 463
BmgT120I	GGNCC	9 cut(s)	197, 257, 263, 332, 575, 659, 665, 671, 824
BmiI	GGNNCC	8 cut(s)	27, 177, 198, 334, 358, 436, 810, 825
BmrFI	CCNGG	6 cut(s)	126, 261, 321, 337, 663, 669
Bpu10I	CCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	2 cut(s)	126, 321
BsaBI	GATNNNNATC	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	6 cut(s)	200, 260, 335, 515, 661, 668
BsaWI	WCCGGW	1 cut(s)	187
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	6 cut(s)	131, 194, 272, 516, 668, 680
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	1 cut(s)	136
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	4 cut(s)	261, 337, 663, 669
BseDI	CCNNGG	6 cut(s)	200, 260, 335, 515, 661, 668
BseGI	GGATG	2 cut(s)	10, 259
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	6 cut(s)	131, 194, 272, 516, 668, 680
BseMII	CTCAG	3 cut(s)	92, 167, 585
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	2 cut(s)	129, 323
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	5 cut(s)	151, 157, 160, 508, 766
BsgI	GTGCAG	1 cut(s)	507
Bsh1236I	CGCG	1 cut(s)	202
BshFI	GGCC	8 cut(s)	83, 265, 276, 333, 631, 660, 673, 748
BshNI	GGYRCC	4 cut(s)	25, 175, 356, 434
BsiSI	CCGG	6 cut(s)	29, 47, 125, 188, 320, 417
BslFI	GGGAC	2 cut(s)	210, 406
BslI	CCNNNNNNNGG	6 cut(s)	131, 194, 272, 516, 668, 680
BsmAI	GTCTC	1 cut(s)	81
BsmBI	CGTCTC	1 cut(s)	81
BsmFI	GGGAC	2 cut(s)	210, 406
BsnI	GGCC	8 cut(s)	83, 265, 276, 333, 631, 660, 673, 748
Bsp1286I	GDGCHC	2 cut(s)	317, 769
Bsp143I	GATC	5 cut(s)	37, 43, 134, 486, 598
BspANI	GGCC	8 cut(s)	83, 265, 276, 333, 631, 660, 673, 748
BspCNI	CTCAG	3 cut(s)	91, 166, 586
BspFNI	CGCG	1 cut(s)	202
BspLI	GGNNCC	8 cut(s)	27, 177, 198, 334, 358, 436, 810, 825
BspMI	ACCTGC	1 cut(s)	422
BspPI	GGATC	4 cut(s)	38, 142, 494, 606
BspT107I	GGYRCC	4 cut(s)	25, 175, 356, 434
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	6 cut(s)	200, 260, 335, 515, 661, 668
BssMI	GATC	5 cut(s)	37, 43, 134, 486, 598
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	515
Bst2UI	CCWGG	4 cut(s)	261, 337, 663, 669
Bst4CI	ACNGT	1 cut(s)	65
BstACI	GRCGYC	1 cut(s)	71
BstC8I	GCNNGC	5 cut(s)	113, 117, 207, 317, 418
BstDEI	CTNAG	3 cut(s)	78, 153, 594
BstDSI	CCRYGG	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	10, 259
BstFNI	CGCG	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	5 cut(s)	40, 46, 137, 489, 601
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	5 cut(s)	37, 43, 134, 486, 598
BstMWI	GCNNNNNNNGC	9 cut(s)	112, 173, 296, 312, 321, 330, 413, 530, 637
BstNI	CCWGG	4 cut(s)	261, 337, 663, 669
BstNSI	RCATGY	3 cut(s)	530, 689, 841
BstSCI	CCNGG	6 cut(s)	124, 259, 319, 335, 661, 667
BstSFI	CTRYAG	1 cut(s)	540
BstSLI	GKGCMC	1 cut(s)	317
BstUI	CGCG	1 cut(s)	202
BstV1I	GCAGC	5 cut(s)	151, 157, 160, 508, 766
BstX2I	RGATCY	2 cut(s)	134, 598
BstYI	RGATCY	2 cut(s)	134, 598
BsuRI	GGCC	8 cut(s)	83, 265, 276, 333, 631, 660, 673, 748
BtgI	CCRYGG	1 cut(s)	200
BtrI	CACGTC	2 cut(s)	448, 463
BtsCI	GGATG	2 cut(s)	10, 259
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	33, 57
BveI	ACCTGC	1 cut(s)	422
Cac8I	GCNNGC	5 cut(s)	113, 117, 207, 317, 418
CaiI	CAGNNNCTG	1 cut(s)	164
CfoI	GCGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	9 cut(s)	197, 257, 263, 332, 575, 659, 665, 671, 824
Cfr42I	CCGCGG	1 cut(s)	203
Csp6I	GTAC	2 cut(s)	66, 217
CspCI	CAANNNNNGTGG	2 cut(s)	349, 384
CviAII	CATG	5 cut(s)	527, 605, 686, 834, 838
CviQI	GTAC	2 cut(s)	66, 217
DdeI	CTNAG	3 cut(s)	78, 153, 594
DpnI	GATC	5 cut(s)	39, 45, 136, 488, 600
DpnII	GATC	5 cut(s)	37, 43, 134, 486, 598
DriI	GACNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	274
Eam1105I	GACNNNNNGTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	515
Eco24I	GRGCYC	1 cut(s)	769
Eco32I	GATATC	1 cut(s)	713
Eco47I	GGWCC	5 cut(s)	197, 257, 575, 665, 824
Eco57I	CTGAAG	1 cut(s)	372
EcoO109I	RGGNCCY	1 cut(s)	659
EcoRII	CCWGG	4 cut(s)	259, 335, 661, 667
EcoRV	GATATC	1 cut(s)	713
EcoT14I	CCWWGG	1 cut(s)	515
EcoT22I	ATGCAT	1 cut(s)	839
EcoT38I	GRGCYC	1 cut(s)	769
ErhI	CCWWGG	1 cut(s)	515
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	5 cut(s)	530, 608, 689, 837, 841
FaqI	GGGAC	2 cut(s)	210, 406
FatI	CATG	5 cut(s)	526, 604, 685, 833, 837
FauI	CCCGC	1 cut(s)	187
FbaI	TGATCA	1 cut(s)	37
FokI	GGATG	2 cut(s)	17, 266
FriOI	GRGCYC	1 cut(s)	769
FspBI	CTAG	1 cut(s)	483
GlaI	GCGC	1 cut(s)	120
HaeIII	GGCC	8 cut(s)	83, 265, 276, 333, 631, 660, 673, 748
HapII	CCGG	6 cut(s)	29, 47, 125, 188, 320, 417
HhaI	GCGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	5 cut(s)	530, 608, 689, 837, 841
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HinfI	GANTC	3 cut(s)	11, 184, 394
HpaII	CCGG	6 cut(s)	29, 47, 125, 188, 320, 417
Hpy166II	GTNNAC	3 cut(s)	10, 285, 827
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	4 cut(s)	41, 368, 611, 770
Hpy8I	GTNNAC	3 cut(s)	10, 285, 827
Hpy99I	CGWCG	3 cut(s)	22, 73, 76
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	5 cut(s)	71, 215, 281, 447, 462
HpyCH4V	TGCA	5 cut(s)	233, 431, 451, 524, 837
HpyF10VI	GCNNNNNNNGC	9 cut(s)	112, 173, 296, 312, 321, 330, 413, 530, 637
HpyF3I	CTNAG	3 cut(s)	78, 153, 594
HpySE526I	ACGT	5 cut(s)	71, 215, 281, 447, 462
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	5 cut(s)	530, 608, 689, 837, 841
HspAI	GCGC	1 cut(s)	119
KroI	GCCGGC	1 cut(s)	416
KroNI	GCCGGC	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	37
KspI	CCGCGG	1 cut(s)	203
Kzo9I	GATC	5 cut(s)	37, 43, 134, 486, 598
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	5 cut(s)	151, 157, 160, 508, 766
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	5 cut(s)	71, 215, 281, 447, 462
MalI	GATC	5 cut(s)	39, 45, 136, 488, 600
MboI	GATC	5 cut(s)	37, 43, 134, 486, 598
MboII	GAAGA	1 cut(s)	593
MfeI	CAATTG	1 cut(s)	723
MflI	RGATCY	2 cut(s)	134, 598
MhlI	GDGCHC	2 cut(s)	317, 769
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	4 cut(s)	234, 376, 570, 723
MluNI	TGGCCA	1 cut(s)	276
MlyI	GAGTC	3 cut(s)	5, 178, 388
MmeI	TCCRAC	1 cut(s)	786
Mox20I	TGGCCA	1 cut(s)	276
Mph1103I	ATGCAT	1 cut(s)	839
MroNI	GCCGGC	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	276
MslI	CAYNNNNRTG	2 cut(s)	456, 832
Msp20I	TGGCCA	1 cut(s)	276
MspA1I	CMGCKG	6 cut(s)	161, 202, 407, 443, 539, 779
MspI	CCGG	6 cut(s)	29, 47, 125, 188, 320, 417
MspR9I	CCNGG	6 cut(s)	126, 261, 321, 337, 663, 669
MunI	CAATTG	1 cut(s)	723
MvaI	CCWGG	4 cut(s)	261, 337, 663, 669
MvnI	CGCG	1 cut(s)	202
MwoI	GCNNNNNNNGC	9 cut(s)	112, 173, 296, 312, 321, 330, 413, 530, 637
NaeI	GCCGGC	1 cut(s)	418
NciI	CCSGG	2 cut(s)	126, 321
NdeII	GATC	5 cut(s)	37, 43, 134, 486, 598
NgoMIV	GCCGGC	1 cut(s)	416
NlaIII	CATG	5 cut(s)	530, 608, 689, 837, 841
NlaIV	GGNNCC	8 cut(s)	27, 177, 198, 334, 358, 436, 810, 825
NsiI	ATGCAT	1 cut(s)	839
NspI	RCATGY	3 cut(s)	530, 689, 841
PaqCI	CACCTGC	1 cut(s)	422
PciI	ACATGT	2 cut(s)	526, 685
PdiI	GCCGGC	1 cut(s)	418
PflFI	GACNNNGTC	1 cut(s)	73
PflMI	CCANNNNNTGG	2 cut(s)	272, 680
PleI	GAGTC	3 cut(s)	5, 178, 388
PpsI	GAGTC	3 cut(s)	5, 178, 388
PscI	ACATGT	2 cut(s)	526, 685
Psp6I	CCWGG	4 cut(s)	259, 335, 661, 667
PspGI	CCWGG	4 cut(s)	259, 335, 661, 667
PspN4I	GGNNCC	8 cut(s)	27, 177, 198, 334, 358, 436, 810, 825
PspPI	GGNCC	9 cut(s)	197, 257, 263, 332, 575, 659, 665, 671, 824
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	2 cut(s)	134, 598
PsyI	GACNNNGTC	1 cut(s)	73
PvuII	CAGCTG	3 cut(s)	407, 539, 779
RsaI	GTAC	2 cut(s)	67, 218
RsaNI	GTAC	2 cut(s)	66, 217
RseI	CAYNNNNRTG	2 cut(s)	456, 832
SacII	CCGCGG	1 cut(s)	203
Sau3AI	GATC	5 cut(s)	37, 43, 134, 486, 598
Sau96I	GGNCC	9 cut(s)	197, 257, 263, 332, 575, 659, 665, 671, 824
SchI	GAGTC	3 cut(s)	5, 178, 388
ScrFI	CCNGG	6 cut(s)	126, 261, 321, 337, 663, 669
SduI	GDGCHC	2 cut(s)	317, 769
SfcI	CTRYAG	1 cut(s)	540
Sfr303I	CCGCGG	1 cut(s)	203
SgrBI	CCGCGG	1 cut(s)	203
SinI	GGWCC	5 cut(s)	197, 257, 575, 665, 824
SmiMI	CAYNNNNRTG	2 cut(s)	456, 832
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	4 cut(s)	234, 376, 570, 723
SspMI	CTAG	1 cut(s)	483
StyD4I	CCNGG	6 cut(s)	124, 259, 319, 335, 661, 667
StyI	CCWWGG	1 cut(s)	515
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	5 cut(s)	74, 218, 284, 450, 465
TaqI	TCGA	3 cut(s)	20, 634, 771
TasI	AATT	4 cut(s)	234, 376, 570, 723
TauI	GCSGC	5 cut(s)	86, 164, 205, 299, 386
TscAI	CASTG	2 cut(s)	40, 57
TseI	GCWGC	5 cut(s)	145, 148, 164, 521, 779
TspDTI	ATGAA	2 cut(s)	593, 807
TspRI	CASTG	2 cut(s)	40, 57
Tth111I	GACNNNGTC	1 cut(s)	73
Van91I	CCANNNNNTGG	2 cut(s)	272, 680
VpaK11BI	GGWCC	5 cut(s)	197, 257, 575, 665, 824
XceI	RCATGY	3 cut(s)	530, 689, 841
XspI	CTAG	1 cut(s)	483
ZraI	GACGTC	1 cut(s)	72
Zsp2I	ATGCAT	1 cut(s)	839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.