Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002717

Physical Location & Seq

Genomic Coordinates Reverse (-)

38798519 .. 38799650

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19692

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGACCAGGTATGCAAGTGCAAGTGCAAGGTCGGATGGTCTTCTCCTCCTTTGTAGAGGGAGGGATGCAAACAGTGTGCCATTGGCAAGTGCATATGGCCTTGCCAAACATAGGGAAGGCCGTCGGGAATGGGCAATTGCTCCTGGCGTCTCCCCTTCTCCCAGATATCAACATGCAGCAGTTTTTGTTAATGCACGCTTGCATGTTTCCGGAGGGGCCCTTGGTGGTGGGCGCATGGTTGAAGATTCATCAAGTGTTGCAGTGTTGGATACTGCAGCCGGGGTTTGGTGCGATACAAAATCTGTTGTCACGAGTCCAAGGACAGGTAGATACAGCGCTGATGCAGCTGGTGGAGATGCTGCAGTTGAATTGACACGGCGTTGCAGGCATGCAGCTGCTGCGGTTGGTGACCTGATATTTATATACGGTGGTCTACGTGGTGGTAAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0016020 GO:0044424 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_2 Kelch_4 Metallophos

Protein Analysis

150

Amino Acids

15.57

Weight (kDa)

9.84

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_2	PF07646	54 - 101	3.4e-08	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08420 AT1G08420 AT2G27210 AT2G27210
fragaria_vesca	FvH4_3g26300
malus_domestica	MD03G1156600.v1.1 MD03G1157300.v1.1 MD11G1174100.v1.1
prunus_persica	Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1
pyrus_communis	pycom03g11040 pycom11g14860
rosa_chinensis	RchiOBHm_Chr5g0048611 RchiOBHm_Chr7g0219991 RchiOBHm_Chr7g0220001
rosa_laevigata	RLG00000034543
rosa_multiflora	Rmu_co8183230.1_g000001 Rmu_co8284673.1_g000001 Rmu_sc0005838.1_g000012 Rmu_sc0005838.1_g000013 Rmu_sc0007553.1_g000001 Rmu_sc0008151.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033170 Rroxscaffold_3G00239830
rosa_rugosa	Rorug05G0240500 Rorug07G0188300
rosa_samantha	Rh5AG319700 Rh5CG355900 Rh7AG332100 Rh7CG349500 Rh7CG349600 Rh7DG327700 Rh7DG327800
rosa_wichuraiana	Rw0G021290 Rw5G029900 Rw7G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	433
AccIII	TCCGGA	1 cut(s)	209
AciI	CCGC	1 cut(s)	401
AcyI	GRCGYC	1 cut(s)	147
AfeI	AGCGCT	1 cut(s)	337
AfiI	CCNNNNNNNGG	3 cut(s)	111, 285, 323
AgsI	TTSAA	2 cut(s)	242, 368
AjnI	CCWGG	2 cut(s)	5, 142
AluBI	AGCT	2 cut(s)	347, 395
AluI	AGCT	2 cut(s)	347, 395
Alw26I	GTCTC	1 cut(s)	154
AlwNI	CAGNNNCTG	1 cut(s)	398
Aor13HI	TCCGGA	1 cut(s)	209
Aor51HI	AGCGCT	1 cut(s)	337
AoxI	GGCC	3 cut(s)	97, 118, 216
ApaI	GGGCCC	1 cut(s)	220
ApeKI	GCWGC	7 cut(s)	176, 275, 344, 359, 392, 395, 398
AspLEI	GCGC	2 cut(s)	234, 338
AspS9I	GGNCC	2 cut(s)	216, 217
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	220
BauI	CACGAG	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	32
BbvI	GCAGC	7 cut(s)	188, 287, 346, 356, 382, 385, 404
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	2 cut(s)	105, 392
BciT130I	CCWGG	2 cut(s)	7, 144
BciVI	GTATCC	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	154
BfmI	CTRYAG	2 cut(s)	273, 360
BfoI	RGCGCY	1 cut(s)	339
BfuI	GTATCC	1 cut(s)	262
BisI	GCNGC	7 cut(s)	177, 276, 345, 360, 393, 396, 399
BlsI	GCNGC	7 cut(s)	178, 277, 346, 361, 394, 397, 400
Bme1390I	CCNGG	3 cut(s)	7, 144, 280
BmgT120I	GGNCC	2 cut(s)	216, 217
BmiI	GGNNCC	2 cut(s)	217, 218
BmrFI	CCNGG	3 cut(s)	7, 144, 280
BmsI	GCATC	3 cut(s)	55, 331, 346
BpiI	GAAGAC	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	280
BsaAI	YACGTR	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	3 cut(s)	220, 279, 317
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 285, 323
BseAI	TCCGGA	1 cut(s)	209
BseBI	CCWGG	2 cut(s)	7, 144
BseDI	CCNNGG	3 cut(s)	220, 279, 317
BseGI	GGATG	2 cut(s)	40, 70
BseLI	CCNNNNNNNGG	3 cut(s)	111, 285, 323
BseRI	GAGGAG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	7 cut(s)	188, 287, 346, 356, 382, 385, 404
BshFI	GGCC	3 cut(s)	99, 120, 218
BsiSI	CCGG	2 cut(s)	210, 279
BslI	CCNNNNNNNGG	3 cut(s)	111, 285, 323
BsmAI	GTCTC	1 cut(s)	154
BsmBI	CGTCTC	1 cut(s)	154
BsnI	GGCC	3 cut(s)	99, 120, 218
Bsp120I	GGGCCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp13I	TCCGGA	1 cut(s)	209
BspACI	CCGC	1 cut(s)	401
BspANI	GGCC	3 cut(s)	99, 120, 218
BspEI	TCCGGA	1 cut(s)	209
BspLI	GGNNCC	2 cut(s)	217, 218
BspMAI	CTGCAG	2 cut(s)	277, 364
BssECI	CCNNGG	3 cut(s)	220, 279, 317
BssNI	GRCGYC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	310
BssT1I	CCWWGG	2 cut(s)	220, 317
Bst2BI	CACGAG	1 cut(s)	310
Bst2UI	CCWGG	2 cut(s)	7, 144
Bst4CI	ACNGT	2 cut(s)	74, 428
BstACI	GRCGYC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstBAI	YACGTR	1 cut(s)	437
BstC8I	GCNNGC	4 cut(s)	196, 200, 386, 390
BstEII	GGTNACC	1 cut(s)	407
BstF5I	GGATG	2 cut(s)	40, 70
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	2 cut(s)	234, 338
BstMAI	GTCTC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	3 cut(s)	344, 385, 398
BstNI	CCWGG	2 cut(s)	7, 144
BstNSI	RCATGY	3 cut(s)	176, 206, 392
BstPI	GGTNACC	1 cut(s)	407
BstSCI	CCNGG	3 cut(s)	5, 142, 278
BstSFI	CTRYAG	2 cut(s)	273, 360
BstSLI	GKGCMC	1 cut(s)	220
BstV1I	GCAGC	7 cut(s)	188, 287, 346, 356, 382, 385, 404
BstV2I	GAAGAC	1 cut(s)	32
BsuI	GTATCC	1 cut(s)	262
BsuRI	GGCC	3 cut(s)	99, 120, 218
BtsCI	GGATG	2 cut(s)	40, 70
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	2 cut(s)	79, 267
Cac8I	GCNNGC	4 cut(s)	196, 200, 386, 390
CaiI	CAGNNNCTG	1 cut(s)	398
CfoI	GCGC	2 cut(s)	234, 338
Cfr13I	GGNCC	2 cut(s)	216, 217
CseI	GACGC	1 cut(s)	136
CsiI	ACCWGGT	1 cut(s)	5
CviAII	CATG	4 cut(s)	173, 203, 235, 389
CviJI	RGCY	6 cut(s)	99, 120, 218, 278, 347, 395
CviKI_1	RGCY	6 cut(s)	99, 120, 218, 278, 347, 395
Eco130I	CCWWGG	2 cut(s)	220, 317
Eco24I	GRGCYC	1 cut(s)	220
Eco32I	GATATC	1 cut(s)	167
Eco47III	AGCGCT	1 cut(s)	337
Eco91I	GGTNACC	1 cut(s)	407
EcoO109I	RGGNCCY	2 cut(s)	216, 217
EcoO65I	GGTNACC	1 cut(s)	407
EcoRII	CCWGG	2 cut(s)	5, 142
EcoRV	GATATC	1 cut(s)	167
EcoT14I	CCWWGG	2 cut(s)	220, 317
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	2 cut(s)	220, 317
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	4 cut(s)	176, 206, 238, 392
FatI	CATG	4 cut(s)	172, 202, 234, 388
FauNDI	CATATG	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	433
Fnu4HI	GCNGC	7 cut(s)	177, 276, 345, 360, 393, 396, 399
FokI	GGATG	2 cut(s)	47, 77
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	7 cut(s)	177, 276, 345, 360, 393, 396, 399
GlaI	GCGC	2 cut(s)	233, 337
GluI	GCNGC	7 cut(s)	177, 276, 345, 360, 393, 396, 399
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	3 cut(s)	99, 120, 218
HapII	CCGG	2 cut(s)	210, 279
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	2 cut(s)	234, 338
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	4 cut(s)	176, 206, 238, 392
Hin6I	GCGC	2 cut(s)	232, 336
HinP1I	GCGC	2 cut(s)	232, 336
HinfI	GANTC	2 cut(s)	245, 313
HpaII	CCGG	2 cut(s)	210, 279
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	1 cut(s)	434
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	3 cut(s)	125, 210, 310
Hpy8I	GTNNAC	1 cut(s)	434
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	2 cut(s)	110, 165
HpyCH4III	ACNGT	2 cut(s)	74, 428
HpyCH4IV	ACGT	1 cut(s)	436
HpyF10VI	GCNNNNNNNGC	3 cut(s)	344, 385, 398
HpySE526I	ACGT	1 cut(s)	436
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	4 cut(s)	176, 206, 238, 392
HspAI	GCGC	2 cut(s)	232, 336
Kpn2I	TCCGGA	1 cut(s)	209
LmnI	GCTCC	1 cut(s)	145
Lsp1109I	GCAGC	7 cut(s)	188, 287, 346, 356, 382, 385, 404
LweI	GCATC	3 cut(s)	55, 331, 346
MabI	ACCWGGT	1 cut(s)	5
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	2 cut(s)	307, 407
MboII	GAAGA	2 cut(s)	32, 254
MfeI	CAATTG	1 cut(s)	135
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	2 cut(s)	135, 368
MlyI	GAGTC	1 cut(s)	322
MmeI	TCCRAC	2 cut(s)	12, 246
MnlI	CCTC	4 cut(s)	50, 54, 56, 206
MroI	TCCGGA	1 cut(s)	209
MseI	TTAA	1 cut(s)	189
MspA1I	CMGCKG	2 cut(s)	347, 395
MspI	CCGG	2 cut(s)	210, 279
MspR9I	CCNGG	3 cut(s)	7, 144, 280
MunI	CAATTG	1 cut(s)	135
MvaI	CCWGG	2 cut(s)	7, 144
MwoI	GCNNNNNNNGC	3 cut(s)	344, 385, 398
NciI	CCSGG	1 cut(s)	280
NdeI	CATATG	1 cut(s)	94
NlaIII	CATG	4 cut(s)	176, 206, 238, 392
NlaIV	GGNNCC	2 cut(s)	217, 218
NmuCI	GTSAC	2 cut(s)	307, 407
NspI	RCATGY	3 cut(s)	176, 206, 392
PaeI	GCATGC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	7 cut(s)	178, 277, 346, 361, 394, 397, 400
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
Ppu21I	YACGTR	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	5, 142
PspEI	GGTNACC	1 cut(s)	407
PspGI	CCWGG	2 cut(s)	5, 142
PspN4I	GGNNCC	2 cut(s)	217, 218
PspOMI	GGGCCC	1 cut(s)	216
PspPI	GGNCC	2 cut(s)	216, 217
PstI	CTGCAG	2 cut(s)	277, 364
PstNI	CAGNNNCTG	1 cut(s)	398
PvuII	CAGCTG	2 cut(s)	347, 395
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	7 cut(s)	177, 276, 345, 360, 393, 396, 399
Sau96I	GGNCC	2 cut(s)	216, 217
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	3 cut(s)	7, 144, 280
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	7 cut(s)	11, 32, 328, 349, 397, 414, 439
SexAI	ACCWGGT	1 cut(s)	5
SfaNI	GCATC	3 cut(s)	55, 331, 346
SfcI	CTRYAG	2 cut(s)	273, 360
SphI	GCATGC	1 cut(s)	392
Sse9I	AATT	2 cut(s)	135, 368
SsiI	CCGC	1 cut(s)	401
StyD4I	CCNGG	3 cut(s)	5, 142, 278
StyI	CCWWGG	2 cut(s)	220, 317
TaaI	ACNGT	2 cut(s)	74, 428
TaiI	ACGT	1 cut(s)	439
TasI	AATT	2 cut(s)	135, 368
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	2 cut(s)	79, 267
TseFI	GTSAC	2 cut(s)	307, 407
TseI	GCWGC	7 cut(s)	176, 275, 344, 359, 392, 395, 398
Tsp45I	GTSAC	2 cut(s)	307, 407
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	2 cut(s)	79, 267
XceI	RCATGY	3 cut(s)	176, 206, 392
XmiI	GTMKAC	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.