Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002717

Physical Location & Seq

Genomic Coordinates Reverse (-)

39696919 .. 39698052

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG327700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTTACGCTATCTCAGGTTGTTGTAGCTGCAGAGACTGGGGGAGCTTTGGGCGGCATGTTGAGGCAGCTTTCAATAGATCAGTTTGAAAATGAAGGCAGGCGGGTTAGGTATGGGACCCCGGAGTGTGCAACTGCAGCAAGGAAGTTATTAGATAGGCAGATGTCCATTAATAGTGTGCCCAAAAAGGTAATAGCACATCTTTTAAAGCCACATGGATGGAAGCCTCCTGTTTGCAGGCAATTTTTCTTGGATTGCAATGAAATAGCAGATCTTTGTGATAGTGCTGAACGGATATTCTCTAGTGAACCAAGTGTCTTGCAACTTAGAGCTCCTATCAAGATATTTGGTGATTTACACTGGCAATTTGACGATCTCATGCTCCTTTTTGATGAGTATGGTTCACCTTCAACTGCTGGGAATATTGCGCAAGTGTCTTTATGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0016020 GO:0044424 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_2 Kelch_4 Metallophos

Protein Analysis

149

Amino Acids

16.57

Weight (kDa)

5.89

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08420 AT1G08420 AT2G27210 AT2G27210
fragaria_vesca	FvH4_3g26300
malus_domestica	MD03G1156600.v1.1 MD03G1157300.v1.1 MD11G1174100.v1.1
prunus_persica	Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1
pyrus_communis	pycom03g11040 pycom11g14860
rosa_chinensis	RchiOBHm_Chr5g0048611 RchiOBHm_Chr7g0219991 RchiOBHm_Chr7g0220001
rosa_laevigata	RLG00000034543
rosa_multiflora	Rmu_co8183230.1_g000001 Rmu_co8284673.1_g000001 Rmu_sc0005838.1_g000012 Rmu_sc0005838.1_g000013 Rmu_sc0007553.1_g000001 Rmu_sc0008151.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033170 Rroxscaffold_3G00239830
rosa_rugosa	Rorug05G0240500 Rorug07G0188300
rosa_samantha	Rh5AG319700 Rh5CG355900 Rh7AG332100 Rh7CG349500 Rh7CG349600 Rh7DG327700 Rh7DG327800
rosa_wichuraiana	Rw0G021290 Rw5G029900 Rw7G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	429
AciI	CCGC	2 cut(s)	54, 103
AgsI	TTSAA	3 cut(s)	75, 89, 411
AluBI	AGCT	4 cut(s)	29, 47, 70, 332
AluI	AGCT	4 cut(s)	29, 47, 70, 332
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	29
AlwNI	CAGNNNCTG	1 cut(s)	38
ApeKI	GCWGC	3 cut(s)	29, 67, 137
AseI	ATTAAT	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	362, 396
AvaII	GGWCC	1 cut(s)	117
BaeGI	GKGCMC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	3 cut(s)	16, 79, 149
BccI	CCATC	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	2 cut(s)	30, 135
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	4 cut(s)	30, 55, 68, 138
BlsI	GCNGC	4 cut(s)	31, 56, 69, 139
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	2 cut(s)	118, 119
BmrFI	CCNGG	1 cut(s)	122
BmrI	ACTGGG	1 cut(s)	48
BmuI	ACTGGG	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	120
Bse1I	ACTGG	2 cut(s)	43, 365
Bse3DI	GCAATG	1 cut(s)	265
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	224
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	2 cut(s)	43, 365
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	3 cut(s)	16, 79, 149
BseYI	CCCAGC	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	130
Bsp1286I	GDGCHC	2 cut(s)	183, 334
Bsp143I	GATC	3 cut(s)	79, 271, 373
BspACI	CCGC	2 cut(s)	54, 103
BspCNI	CTCAG	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	118, 119
BspMAI	CTGCAG	2 cut(s)	34, 139
BsrDI	GCAATG	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	43, 365
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	3 cut(s)	79, 271, 373
BstC8I	GCNNGC	2 cut(s)	101, 239
BstDEI	CTNAG	2 cut(s)	15, 326
BstF5I	GGATG	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	3 cut(s)	82, 274, 376
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	3 cut(s)	79, 271, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	2 cut(s)	30, 135
BstSLI	GKGCMC	1 cut(s)	183
BstV1I	GCAGC	3 cut(s)	16, 79, 149
BstX2I	RGATCY	1 cut(s)	271
BstXI	CCANNNNNNTGG	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	101, 239
CaiI	CAGNNNCTG	1 cut(s)	38
CfoI	GCGC	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	117
CviAII	CATG	3 cut(s)	58, 215, 379
CviJI	RGCY	6 cut(s)	29, 47, 70, 211, 226, 332
CviKI_1	RGCY	6 cut(s)	29, 47, 70, 211, 226, 332
DdeI	CTNAG	2 cut(s)	15, 326
DpnI	GATC	3 cut(s)	81, 273, 375
DpnII	GATC	3 cut(s)	79, 271, 373
DraI	TTTAAA	1 cut(s)	207
Ecl136II	GAGCTC	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	334
FaeI	CATG	3 cut(s)	61, 218, 382
FaiI	YATR	7 cut(s)	59, 114, 216, 380, 399, 442, 448
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	3 cut(s)	57, 214, 378
FauI	CCCGC	1 cut(s)	96
Fnu4HI	GCNGC	4 cut(s)	30, 55, 68, 138
FokI	GGATG	1 cut(s)	231
FriOI	GRGCYC	1 cut(s)	334
Fsp4HI	GCNGC	4 cut(s)	30, 55, 68, 138
FspBI	CTAG	1 cut(s)	303
FspI	TGCGCA	1 cut(s)	429
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	4 cut(s)	30, 55, 68, 138
GsaI	CCCAGC	1 cut(s)	420
HapII	CCGG	1 cut(s)	122
HhaI	GCGC	1 cut(s)	430
Hin1II	CATG	3 cut(s)	61, 218, 382
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	362, 396
Hpy166II	GTNNAC	3 cut(s)	6, 308, 404
Hpy188III	TCNNGA	1 cut(s)	340
Hpy8I	GTNNAC	3 cut(s)	6, 308, 404
HpyAV	CCTTC	2 cut(s)	89, 417
HpyCH4V	TGCA	6 cut(s)	32, 131, 137, 237, 258, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	2 cut(s)	15, 326
Hsp92II	CATG	3 cut(s)	61, 218, 382
HspAI	GCGC	1 cut(s)	428
KflI	GGGWCCC	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	79, 271, 373
LmnI	GCTCC	3 cut(s)	44, 337, 387
LpnPI	CCDG	8 cut(s)	2, 24, 85, 135, 223, 243, 346, 402
Lsp1109I	GCAGC	3 cut(s)	16, 79, 149
MaeI	CTAG	1 cut(s)	303
MalI	GATC	3 cut(s)	81, 273, 375
MboI	GATC	3 cut(s)	79, 271, 373
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	2 cut(s)	183, 334
MluCI	AATT	2 cut(s)	242, 365
MnlI	CCTC	2 cut(s)	57, 237
MseI	TTAA	2 cut(s)	171, 206
MslI	CAYNNNNRTG	1 cut(s)	217
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	137
NciI	CCSGG	1 cut(s)	122
NdeII	GATC	3 cut(s)	79, 271, 373
NlaIII	CATG	3 cut(s)	61, 218, 382
NlaIV	GGNNCC	2 cut(s)	118, 119
NsbI	TGCGCA	1 cut(s)	429
NspI	RCATGY	1 cut(s)	61
PkrI	GCNGC	4 cut(s)	31, 56, 69, 139
PpuMI	RGGWCCY	1 cut(s)	117
PshBI	ATTAAT	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	334
Psp5II	RGGWCCY	1 cut(s)	117
PspFI	CCCAGC	1 cut(s)	416
PspN4I	GGNNCC	2 cut(s)	118, 119
PspPI	GGNCC	1 cut(s)	117
PspPPI	RGGWCCY	1 cut(s)	117
PstI	CTGCAG	2 cut(s)	34, 139
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	217
SacI	GAGCTC	1 cut(s)	334
SaqAI	TTAA	2 cut(s)	171, 206
SatI	GCNGC	4 cut(s)	30, 55, 68, 138
Sau3AI	GATC	3 cut(s)	79, 271, 373
Sau96I	GGNCC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	2 cut(s)	183, 334
SetI	ASST	8 cut(s)	21, 31, 49, 72, 113, 192, 334, 409
SfcI	CTRYAG	2 cut(s)	30, 135
SinI	GGWCC	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	217
Sse9I	AATT	2 cut(s)	242, 365
SsiI	CCGC	2 cut(s)	54, 103
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	1 cut(s)	303
SstI	GAGCTC	1 cut(s)	334
StyD4I	CCNGG	1 cut(s)	120
TasI	AATT	2 cut(s)	242, 365
TauI	GCSGC	1 cut(s)	57
Tru1I	TTAA	2 cut(s)	171, 206
Tru9I	TTAA	2 cut(s)	171, 206
TscAI	CASTG	1 cut(s)	365
TseI	GCWGC	3 cut(s)	29, 67, 137
TspDTI	ATGAA	2 cut(s)	108, 276
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	117
VspI	ATTAAT	1 cut(s)	171
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.