Rorug07G0188300

serine threonine-protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002717
Physical Location & Seq
Forward (+)
15938278 .. 15941360
3083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0188300.1

Sequence Viewer

Length: 1119 bp
ATGCAAGGGGGAAGAGGTGGAGGGCCTGGTGGCAGGGGTCCTTTTGATTTCAATGATCCTTTTGCTGGTTTTGGTGGATTTGGGGGTCAGGGGAGTTTGATGTCTAACGTCTTCGGAGGGAGGGATCCGTTTGATGACCCTTTCTTTACTCGCCCGTTTGGAGGGATATTTGACTCGGGTTTTCCGGGTATGGGTGGAGGCATGTTTCCTGGAATGGGTGGCGGTATGTTTCCTGGAATGGGTGGCGGTATGTTTCCCGCAATGGGTGGCAGTATGTTTCCTGCAATGGGTCCTGGTATGAATGGAGATATTTTTTCAGGTATGCGGCCAACTGGGTTCATTGAGAATCACGATCAGGCTCCAGAGCGGCAGAAATCTAGGGGTCCGATCATTGAGGAACTAGACTCTGATCATGAAGAAGAAGAGGCTAATAGTGAGAAAAAGGAAAATCCGCGGAAACGTGTTGGGCCAAGCAATGATCCTTATGTTGAGCACCCTGATGATGTAGTTGAAGAGAAGAAGAGCAAGCATTTGCAATCTATGGACAACTACAGTCAGTTTGGTGCTATGCAATCACAGCCTCAAGCTCATAGCTACACATTTCAGAGCTCCAGTGTCACTTATGGTGGTGGTAATGGTGCATACTATACATCTTCCAAGACAAGAAGGATGGGGAGTGATGGGGTTGCTTTTGAAGAAAGTAAGGAAGCTGATACTTCTTCTGGGAAAGCCACACACAGGGTATCTAAGGGGCTCCACAATAAGGGCCATTCAATTACTAGGAAGCTCAAAGATGGTAATGCAGATACAATGCAGACTTTGCATAACCTTAATGAAGATGAGCTTTCCAGTTTTGAACATGCATGGAAGGGAGCTGCTCAAAAACATATGCCTGGATTGAATGATCAGTTTGCTAGTTATGAAAGTCTAGGAGCTGGCGGCAGCAGACATGGGCAGGCCAGTCAGGGAGGTTGGGCACTTCCTAGCAACGATCTTCTACAGAACTCTGGAAATATCATAGCAGATGCCCAAGGCAAAGCAGTACCTTCTCGGTCGCAGCAGTCTGGTAATATGAGAGAAGGTGGTACTAATTCTTCCCGTGGGAGAGCAAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0016020 GO:0044424 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kelch_2 Kelch_4 Metallophos

Protein Analysis

372

Amino Acids

39.5

Weight (kDa)

5.85

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlf1IP PF10248 142 - 291 2.4e-20 Myelodysplasia-myeloid leukemia factor 1-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 367
AccII CGCG 1 cut(s) 454
AciI CCGC 8 cut(s) 222, 246, 258, 325, 367, 452, 454, 939
AclWI GGATC 4 cut(s) 50, 119, 132, 473
AcoI YGGCCR 1 cut(s) 326
AfaI GTAC 2 cut(s) 1044, 1087
AfiI CCNNNNNNNGG 9 cut(s) 65, 161, 191, 215, 239, 263, 287, 738, 763
AflIII ACRYGT 1 cut(s) 460
AgsI TTSAA 6 cut(s) 52, 512, 695, 774, 857, 901
AjnI CCWGG 5 cut(s) 25, 208, 232, 292, 892
AluBI AGCT 8 cut(s) 587, 594, 609, 710, 787, 844, 875, 935
AluI AGCT 8 cut(s) 587, 594, 609, 710, 787, 844, 875, 935
Alw21I GWGCWC 2 cut(s) 495, 611
AlwI GGATC 4 cut(s) 50, 119, 132, 473
Ama87I CYCGRG 1 cut(s) 175
AoxI GGCC 5 cut(s) 23, 326, 467, 766, 957
ApeKI GCWGC 3 cut(s) 875, 942, 1057
AspS9I GGNCC 6 cut(s) 23, 38, 290, 383, 467, 766
AsuC2I CCSGG 1 cut(s) 186
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 3 cut(s) 38, 290, 383
BaeGI GKGCMC 1 cut(s) 979
BamHI GGATCC 1 cut(s) 124
BanII GRGCYC 2 cut(s) 611, 756
BarI GAAGNNNNNNTAC 2 cut(s) 1078, 1110
BbsI GAAGAC 1 cut(s) 103
Bbv12I GWGCWC 2 cut(s) 495, 611
BbvI GCAGC 3 cut(s) 862, 954, 1069
BccI CCATC 3 cut(s) 664, 674, 788
BciT130I CCWGG 5 cut(s) 27, 210, 234, 294, 894
BclI TGATCA 2 cut(s) 409, 904
BcnI CCSGG 1 cut(s) 186
BfaI CTAG 6 cut(s) 378, 401, 780, 915, 929, 984
BfmI CTRYAG 2 cut(s) 550, 998
BisI GCNGC 6 cut(s) 326, 368, 876, 940, 943, 1058
BlsI GCNGC 6 cut(s) 327, 369, 877, 941, 944, 1059
Bme1390I CCNGG 6 cut(s) 27, 186, 210, 234, 294, 894
Bme18I GGWCC 3 cut(s) 38, 290, 383
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 6 cut(s) 23, 38, 290, 383, 467, 766
BmiI GGNNCC 6 cut(s) 39, 126, 291, 360, 384, 755
BmrFI CCNGG 6 cut(s) 27, 186, 210, 234, 294, 894
BmrI ACTGGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 1015
BmuI ACTGGG 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 103
BpmI CTGGAG 2 cut(s) 345, 595
BpuEI CTTGAG 1 cut(s) 567
BpuMI CCSGG 1 cut(s) 186
BsaJI CCNNGG 3 cut(s) 452, 1030, 1099
Bsc4I CCNNNNNNNGG 9 cut(s) 65, 161, 191, 215, 239, 263, 287, 738, 763
Bse1I ACTGG 4 cut(s) 337, 612, 849, 960
Bse3DI GCAATG 3 cut(s) 267, 291, 481
BseBI CCWGG 5 cut(s) 27, 210, 234, 294, 894
BseDI CCNNGG 3 cut(s) 452, 1030, 1099
BseGI GGATG 1 cut(s) 675
BseLI CCNNNNNNNGG 9 cut(s) 65, 161, 191, 215, 239, 263, 287, 738, 763
BseMI GCAATG 3 cut(s) 267, 291, 481
BseNI ACTGG 4 cut(s) 337, 612, 849, 960
BseSI GKGCMC 1 cut(s) 979
BseXI GCAGC 3 cut(s) 862, 954, 1069
Bsh1236I CGCG 1 cut(s) 454
Bsh1285I CGRYCG 1 cut(s) 1055
BshFI GGCC 5 cut(s) 25, 328, 469, 768, 959
BsiEI CGRYCG 1 cut(s) 1055
BsiHKAI GWGCWC 2 cut(s) 495, 611
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 9 cut(s) 65, 161, 191, 215, 239, 263, 287, 738, 763
BsnI GGCC 5 cut(s) 25, 328, 469, 768, 959
BsoBI CYCGRG 1 cut(s) 175
Bsp1286I GDGCHC 4 cut(s) 495, 611, 756, 979
Bsp143I GATC 8 cut(s) 55, 124, 352, 387, 409, 478, 904, 991
BspACI CCGC 8 cut(s) 222, 246, 258, 325, 367, 452, 454, 939
BspANI GGCC 5 cut(s) 25, 328, 469, 768, 959
BspFNI CGCG 1 cut(s) 454
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 6 cut(s) 39, 126, 291, 360, 384, 755
BspPI GGATC 4 cut(s) 50, 119, 132, 473
BspQI GCTCTTC 1 cut(s) 515
BsrBI CCGCTC 1 cut(s) 367
BsrDI GCAATG 3 cut(s) 267, 291, 481
BsrI ACTGG 4 cut(s) 337, 612, 849, 960
BssECI CCNNGG 3 cut(s) 452, 1030, 1099
BssMI GATC 8 cut(s) 55, 124, 352, 387, 409, 478, 904, 991
BssT1I CCWWGG 1 cut(s) 1030
Bst2UI CCWGG 5 cut(s) 27, 210, 234, 294, 894
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 4 cut(s) 7, 417, 507, 515
BstAPI GCANNNNNTGC 1 cut(s) 820
BstC8I GCNNGC 3 cut(s) 527, 937, 957
BstDEI CTNAG 1 cut(s) 747
BstDSI CCRYGG 2 cut(s) 452, 1099
BstF5I GGATG 1 cut(s) 675
BstFNI CGCG 1 cut(s) 454
BstKTI GATC 8 cut(s) 58, 127, 355, 390, 412, 481, 907, 994
BstMBI GATC 8 cut(s) 55, 124, 352, 387, 409, 478, 904, 991
BstMCI CGRYCG 1 cut(s) 1055
BstMWI GCNNNNNNNGC 2 cut(s) 577, 820
BstNI CCWGG 5 cut(s) 27, 210, 234, 294, 894
BstNSI RCATGY 2 cut(s) 205, 863
BstSCI CCNGG 6 cut(s) 25, 184, 208, 232, 292, 892
BstSFI CTRYAG 2 cut(s) 550, 998
BstSLI GKGCMC 1 cut(s) 979
BstUI CGCG 1 cut(s) 454
BstV1I GCAGC 3 cut(s) 862, 954, 1069
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 5 cut(s) 25, 328, 469, 768, 959
BtgI CCRYGG 2 cut(s) 452, 1099
BtsCI GGATG 1 cut(s) 675
BtsIMutI CAGTG 1 cut(s) 619
Cac8I GCNNGC 3 cut(s) 527, 937, 957
CciI TCATGA 1 cut(s) 412
Cfr13I GGNCC 6 cut(s) 23, 38, 290, 383, 467, 766
Cfr42I CCGCGG 1 cut(s) 455
Csp6I GTAC 2 cut(s) 1043, 1086
CviAII CATG 5 cut(s) 202, 413, 860, 864, 950
CviQI GTAC 2 cut(s) 1043, 1086
DdeI CTNAG 1 cut(s) 747
DpnI GATC 8 cut(s) 57, 126, 354, 389, 411, 480, 906, 993
DpnII GATC 8 cut(s) 55, 124, 352, 387, 409, 478, 904, 991
EaeI YGGCCR 1 cut(s) 326
Eam1104I CTCTTC 4 cut(s) 7, 417, 507, 515
EarI CTCTTC 4 cut(s) 7, 417, 507, 515
Ecl136II GAGCTC 1 cut(s) 609
Eco130I CCWWGG 1 cut(s) 1030
Eco24I GRGCYC 2 cut(s) 611, 756
Eco47I GGWCC 3 cut(s) 38, 290, 383
Eco53kI GAGCTC 1 cut(s) 609
Eco88I CYCGRG 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 609
EcoO109I RGGNCCY 3 cut(s) 23, 38, 290
EcoRII CCWGG 5 cut(s) 25, 208, 232, 292, 892
EcoT14I CCWWGG 1 cut(s) 1030
EcoT22I ATGCAT 1 cut(s) 865
EcoT38I GRGCYC 2 cut(s) 611, 756
ErhI CCWWGG 1 cut(s) 1030
FaeI CATG 5 cut(s) 205, 416, 863, 867, 953
FalI AAGNNNNNCTT 2 cut(s) 828, 860
FatI CATG 5 cut(s) 201, 412, 859, 863, 949
FauI CCCGC 1 cut(s) 265
FauNDI CATATG 1 cut(s) 888
FbaI TGATCA 2 cut(s) 409, 904
Fnu4HI GCNGC 6 cut(s) 326, 368, 876, 940, 943, 1058
FokI GGATG 1 cut(s) 682
FriOI GRGCYC 2 cut(s) 611, 756
Fsp4HI GCNGC 6 cut(s) 326, 368, 876, 940, 943, 1058
FspBI CTAG 6 cut(s) 378, 401, 780, 915, 929, 984
GluI GCNGC 6 cut(s) 326, 368, 876, 940, 943, 1058
GsuI CTGGAG 2 cut(s) 345, 595
HaeIII GGCC 5 cut(s) 25, 328, 469, 768, 959
HapII CCGG 1 cut(s) 185
Hin1II CATG 5 cut(s) 205, 416, 863, 867, 953
HinfI GANTC 3 cut(s) 173, 346, 404
HpaII CCGG 1 cut(s) 185
Hpy188I TCNGA 4 cut(s) 116, 387, 409, 606
Hpy188III TCNNGA 4 cut(s) 350, 362, 413, 1008
HpyAV CCTTC 4 cut(s) 660, 862, 1056, 1073
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 2 cut(s) 108, 460
HpyCH4V TGCA 9 cut(s) 4, 284, 535, 571, 641, 803, 814, 823, 863
HpyF10VI GCNNNNNNNGC 2 cut(s) 577, 820
HpyF3I CTNAG 1 cut(s) 747
HpySE526I ACGT 2 cut(s) 108, 460
Hsp92II CATG 5 cut(s) 205, 416, 863, 867, 953
Ksp22I TGATCA 2 cut(s) 409, 904
KspI CCGCGG 1 cut(s) 455
Kzo9I GATC 8 cut(s) 55, 124, 352, 387, 409, 478, 904, 991
LguI GCTCTTC 1 cut(s) 515
LmnI GCTCC 5 cut(s) 364, 614, 759, 872, 932
Lsp1109I GCAGC 3 cut(s) 862, 954, 1069
LweI GCATC 1 cut(s) 1015
MaeI CTAG 6 cut(s) 378, 401, 780, 915, 929, 984
MaeII ACGT 2 cut(s) 108, 460
MaeIII GTNAC 1 cut(s) 616
MalI GATC 8 cut(s) 57, 126, 354, 389, 411, 480, 906, 993
MbiI CCGCTC 1 cut(s) 367
MboI GATC 8 cut(s) 55, 124, 352, 387, 409, 478, 904, 991
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 4 cut(s) 495, 611, 756, 979
MluCI AATT 2 cut(s) 774, 1090
MlyI GAGTC 2 cut(s) 167, 398
Mph1103I ATGCAT 1 cut(s) 865
MseI TTAA 2 cut(s) 831, 1117
MslI CAYNNNNRTG 1 cut(s) 498
MspA1I CMGCKG 1 cut(s) 454
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 6 cut(s) 27, 186, 210, 234, 294, 894
MvaI CCWGG 5 cut(s) 27, 210, 234, 294, 894
MvnI CGCG 1 cut(s) 454
MwoI GCNNNNNNNGC 2 cut(s) 577, 820
NciI CCSGG 1 cut(s) 186
NdeI CATATG 1 cut(s) 888
NdeII GATC 8 cut(s) 55, 124, 352, 387, 409, 478, 904, 991
NlaIII CATG 5 cut(s) 205, 416, 863, 867, 953
NlaIV GGNNCC 6 cut(s) 39, 126, 291, 360, 384, 755
NmuCI GTSAC 1 cut(s) 616
NsiI ATGCAT 1 cut(s) 865
NspI RCATGY 2 cut(s) 205, 863
PagI TCATGA 1 cut(s) 412
PciSI GCTCTTC 1 cut(s) 515
PfeI GAWTC 1 cut(s) 346
PfoI TCCNGGA 2 cut(s) 208, 232
PkrI GCNGC 6 cut(s) 327, 369, 877, 941, 944, 1059
PleI GAGTC 2 cut(s) 167, 398
PpsI GAGTC 2 cut(s) 167, 398
PpuMI RGGWCCY 2 cut(s) 38, 290
Psp124BI GAGCTC 1 cut(s) 611
Psp5II RGGWCCY 2 cut(s) 38, 290
Psp6I CCWGG 5 cut(s) 25, 208, 232, 292, 892
PspGI CCWGG 5 cut(s) 25, 208, 232, 292, 892
PspN4I GGNNCC 6 cut(s) 39, 126, 291, 360, 384, 755
PspPI GGNCC 6 cut(s) 23, 38, 290, 383, 467, 766
PspPPI RGGWCCY 2 cut(s) 38, 290
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 2 cut(s) 1044, 1087
RsaNI GTAC 2 cut(s) 1043, 1086
RseI CAYNNNNRTG 1 cut(s) 498
SacI GAGCTC 1 cut(s) 611
SacII CCGCGG 1 cut(s) 455
SapI GCTCTTC 1 cut(s) 515
SaqAI TTAA 2 cut(s) 831, 1117
SatI GCNGC 6 cut(s) 326, 368, 876, 940, 943, 1058
Sau3AI GATC 8 cut(s) 55, 124, 352, 387, 409, 478, 904, 991
Sau96I GGNCC 6 cut(s) 23, 38, 290, 383, 467, 766
SchI GAGTC 2 cut(s) 167, 398
ScrFI CCNGG 6 cut(s) 27, 186, 210, 234, 294, 894
SduI GDGCHC 4 cut(s) 495, 611, 756, 979
SfaNI GCATC 1 cut(s) 1015
SfcI CTRYAG 2 cut(s) 550, 998
Sfr303I CCGCGG 1 cut(s) 455
SgrBI CCGCGG 1 cut(s) 455
SinI GGWCC 3 cut(s) 38, 290, 383
SmiMI CAYNNNNRTG 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
Sse9I AATT 2 cut(s) 774, 1090
SsiI CCGC 8 cut(s) 222, 246, 258, 325, 367, 452, 454, 939
SspMI CTAG 6 cut(s) 378, 401, 780, 915, 929, 984
SstI GAGCTC 1 cut(s) 611
StyD4I CCNGG 6 cut(s) 25, 184, 208, 232, 292, 892
StyI CCWWGG 1 cut(s) 1030
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 2 cut(s) 111, 463
TaqII GACCGA 1 cut(s) 1041
TasI AATT 2 cut(s) 774, 1090
TauI GCSGC 3 cut(s) 328, 370, 942
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 2 cut(s) 831, 1117
Tru9I TTAA 2 cut(s) 831, 1117
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 3 cut(s) 875, 942, 1057
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 5 cut(s) 314, 328, 429, 849, 936
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 1 cut(s) 619
VpaK11BI GGWCC 3 cut(s) 38, 290, 383
XceI RCATGY 2 cut(s) 205, 863
XspI CTAG 6 cut(s) 378, 401, 780, 915, 929, 984
Zsp2I ATGCAT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.