Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002717

Physical Location & Seq

Genomic Coordinates Reverse (-)

39698238 .. 39704131

Gene Structure 5894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG327800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGACACTGCACCTGGCATGTTTGATGCTCATATAGATGTCAGACTGATCACTCCCTTTGGAGAACCACCAACACCAAGGGCAGCACATGTAGCAACTGCTGTAGGAACTATGGTTGTTATTCAGGGAGGAATTGGTCCTGCTGGCCCTGGACCAGGGCCACGCTACGGGCATGTGATGGCATTGGTGGGGCAAAGATATGTCATGGCAATTGGTGGGAATGATGGTAAACGGCCTTTAGCTGATGTTTGGGCGCTGGACACAGCTGCCAAGCCATATGAATGGCATAAGTTGGAACCAGAGGGGGAAGTCCACCACCATGCATGTATGCAAGTGCAAGTGCAAGGTCGGATGGTCTTCTCCTCCTTTGTACAGGGAGGGATGCAAACAGTGTGCCATTGGCAAGTGCATATGGCCTTGCCAAACATAGGGATGGCCGTTGGGAATGGGCAATTGCTCCTGGCGTCTCCCCTTCTCCCAGATATGAACATGCAGCAGTTTTTGTTAATGCACGCTTGCATGTTTCCGGAGGGGCCCTTGGTGGTGGGCGCATGGTTGAAGATTCATCAAGTGTTGGAGTGTTGGATACTGCAGCCGGGGTTTGGTGCGATACAAAATCTGTTGCATGCAGCTGCTGCGGTTGGTGACCTGATATTTATATACGGTGGTCTACGTGGTGGGGTGTTGCTTGATGACCTACTGGTTGCGGAAGATCTGGCTGCTGCAGAAACAACAACTGCAGCCTCGCATGCTGCAGCTGCAGCTGCTCAGTCTAATTTACCACCAGGCCGTTTGCCTGGAAGATATGGATTCATTGATGAAAGAATGAGGCAGATAATGCCTGAAGCAGCACCTGATGGTGCTGTTGTGCTGGGAAATCCAGTTGCCCCTCCTGTAAATGGAGACATGTATGCTGATATAAGCACTGAAAATGCCTTGCTCCAGGTATCCAGAAGACTGAGTAAAGGTGTAGAGTATTTAGTTGAAGCATCAGCAGCAGAAGCTGAGGCAATCAGCGCTACTTTGGCTGCTGCCCACGACAAGTTAATGGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0016020 GO:0044424 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_2 Kelch_4 Metallophos

Protein Analysis

352

Amino Acids

37.26

Weight (kDa)

5.45

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_KLHDC2_KLHL20_DRC7	PF24681	48 - 136	2.4e-08	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42	PF13415	49 - 114	1e-05	FBX42, beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08420 AT1G08420 AT2G27210 AT2G27210
fragaria_vesca	FvH4_3g26300
malus_domestica	MD03G1156600.v1.1 MD03G1157300.v1.1 MD11G1174100.v1.1
prunus_persica	Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1
pyrus_communis	pycom03g11040 pycom11g14860
rosa_chinensis	RchiOBHm_Chr5g0048611 RchiOBHm_Chr7g0219991 RchiOBHm_Chr7g0220001
rosa_laevigata	RLG00000034543
rosa_multiflora	Rmu_co8183230.1_g000001 Rmu_co8284673.1_g000001 Rmu_sc0005838.1_g000012 Rmu_sc0005838.1_g000013 Rmu_sc0007553.1_g000001 Rmu_sc0008151.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033170 Rroxscaffold_3G00239830
rosa_rugosa	Rorug05G0240500 Rorug07G0188300
rosa_samantha	Rh5AG319700 Rh5CG355900 Rh7AG332100 Rh7CG349500 Rh7CG349600 Rh7DG327700 Rh7DG327800
rosa_wichuraiana	Rw0G021290 Rw5G029900 Rw7G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	670
AccIII	TCCGGA	1 cut(s)	526
AciI	CCGC	2 cut(s)	638, 707
AcoI	YGGCCR	1 cut(s)	435
AcuI	CTGAAG	1 cut(s)	864
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	1 cut(s)	372
AfeI	AGCGCT	1 cut(s)	1018
AfiI	CCNNNNNNNGG	5 cut(s)	155, 167, 428, 602, 899
AflIII	ACRYGT	2 cut(s)	88, 906
AgsI	TTSAA	2 cut(s)	559, 986
AjnI	CCWGG	7 cut(s)	13, 148, 154, 459, 784, 796, 942
AluBI	AGCT	6 cut(s)	242, 266, 632, 758, 764, 1004
AluI	AGCT	6 cut(s)	242, 266, 632, 758, 764, 1004
Alw26I	GTCTC	2 cut(s)	471, 897
AlwNI	CAGNNNCTG	3 cut(s)	635, 854, 1004
Aor13HI	TCCGGA	1 cut(s)	526
Aor51HI	AGCGCT	1 cut(s)	1018
AoxI	GGCC	7 cut(s)	145, 158, 233, 414, 435, 533, 787
ApaI	GGGCCC	1 cut(s)	537
AspLEI	GCGC	3 cut(s)	256, 551, 1019
AspS9I	GGNCC	6 cut(s)	137, 146, 152, 158, 533, 534
AsuC2I	CCSGG	1 cut(s)	597
AsuHPI	GGTGA	1 cut(s)	656
AvaII	GGWCC	2 cut(s)	137, 152
BaeGI	GKGCMC	1 cut(s)	537
BanII	GRGCYC	1 cut(s)	537
BbsI	GAAGAC	2 cut(s)	349, 961
BbvCI	CCTCAGC	1 cut(s)	1005
BccI	CCATC	5 cut(s)	172, 218, 346, 427, 851
BceAI	ACGGC	3 cut(s)	248, 422, 774
BciT130I	CCWGG	7 cut(s)	15, 150, 156, 461, 786, 798, 944
BciVI	GTATCC	2 cut(s)	579, 958
BclI	TGATCA	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	597
BcoDI	GTCTC	2 cut(s)	471, 897
BfmI	CTRYAG	6 cut(s)	102, 590, 723, 738, 753, 759
BfoI	RGCGCY	2 cut(s)	257, 1020
BfuI	GTATCC	2 cut(s)	579, 958
BglII	AGATCT	1 cut(s)	712
Bme1390I	CCNGG	8 cut(s)	15, 150, 156, 461, 597, 786, 798, 944
Bme18I	GGWCC	2 cut(s)	137, 152
BmgT120I	GGNCC	6 cut(s)	137, 146, 152, 158, 533, 534
BmiI	GGNNCC	3 cut(s)	297, 534, 535
BmrFI	CCNGG	8 cut(s)	15, 150, 156, 461, 597, 786, 798, 944
BmsI	GCATC	3 cut(s)	16, 372, 998
BpiI	GAAGAC	2 cut(s)	349, 961
BpmI	CTGGAG	1 cut(s)	926
Bpu10I	CCTNAGC	1 cut(s)	1005
BpuMI	CCSGG	1 cut(s)	597
BsaAI	YACGTR	1 cut(s)	674
BsaHI	GRCGYC	1 cut(s)	464
BsaJI	CCNNGG	5 cut(s)	77, 148, 155, 537, 596
BsaWI	WCCGGW	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	5 cut(s)	155, 167, 428, 602, 899
Bse1I	ACTGG	2 cut(s)	705, 881
BseAI	TCCGGA	1 cut(s)	526
BseBI	CCWGG	7 cut(s)	15, 150, 156, 461, 786, 798, 944
BseDI	CCNNGG	5 cut(s)	77, 148, 155, 537, 596
BseGI	GGATG	3 cut(s)	357, 387, 438
BseLI	CCNNNNNNNGG	5 cut(s)	155, 167, 428, 602, 899
BseMII	CTCAG	3 cut(s)	782, 950, 996
BseNI	ACTGG	2 cut(s)	705, 881
BseRI	GAGGAG	1 cut(s)	352
BseSI	GKGCMC	1 cut(s)	537
BseYI	CCCAGC	1 cut(s)	871
BshFI	GGCC	7 cut(s)	147, 160, 235, 416, 437, 535, 789
BsiSI	CCGG	2 cut(s)	527, 596
BslI	CCNNNNNNNGG	5 cut(s)	155, 167, 428, 602, 899
BsmAI	GTCTC	2 cut(s)	471, 897
BsmBI	CGTCTC	1 cut(s)	471
BsnI	GGCC	7 cut(s)	147, 160, 235, 416, 437, 535, 789
Bsp120I	GGGCCC	1 cut(s)	533
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp13I	TCCGGA	1 cut(s)	526
Bsp1407I	TGTACA	1 cut(s)	370
Bsp143I	GATC	2 cut(s)	48, 712
BspACI	CCGC	2 cut(s)	638, 707
BspANI	GGCC	7 cut(s)	147, 160, 235, 416, 437, 535, 789
BspCNI	CTCAG	3 cut(s)	781, 951, 997
BspEI	TCCGGA	1 cut(s)	526
BspLI	GGNNCC	3 cut(s)	297, 534, 535
BspMAI	CTGCAG	5 cut(s)	594, 727, 742, 757, 763
BsrGI	TGTACA	1 cut(s)	370
BsrI	ACTGG	2 cut(s)	705, 881
BssECI	CCNNGG	5 cut(s)	77, 148, 155, 537, 596
BssMI	GATC	2 cut(s)	48, 712
BssNI	GRCGYC	1 cut(s)	464
BssT1I	CCWWGG	2 cut(s)	77, 537
Bst2UI	CCWGG	7 cut(s)	15, 150, 156, 461, 786, 798, 944
Bst4CI	ACNGT	2 cut(s)	391, 665
BstACI	GRCGYC	1 cut(s)	464
BstAPI	GCANNNNNTGC	2 cut(s)	635, 838
BstAUI	TGTACA	1 cut(s)	370
BstBAI	YACGTR	1 cut(s)	674
BstC8I	GCNNGC	5 cut(s)	145, 513, 517, 627, 750
BstDEI	CTNAG	3 cut(s)	768, 959, 1005
BstEII	GGTNACC	1 cut(s)	644
BstENI	CCTNNNNNAGG	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	357, 387, 438
BstH2I	RGCGCY	2 cut(s)	257, 1020
BstHHI	GCGC	3 cut(s)	256, 551, 1019
BstKTI	GATC	2 cut(s)	51, 715
BstMAI	GTCTC	2 cut(s)	471, 897
BstMBI	GATC	2 cut(s)	48, 712
BstNI	CCWGG	7 cut(s)	15, 150, 156, 461, 786, 798, 944
BstNSI	RCATGY	9 cut(s)	22, 92, 176, 327, 493, 523, 629, 752, 910
BstPI	GGTNACC	1 cut(s)	644
BstSCI	CCNGG	8 cut(s)	13, 148, 154, 459, 595, 784, 796, 942
BstSFI	CTRYAG	6 cut(s)	102, 590, 723, 738, 753, 759
BstSLI	GKGCMC	1 cut(s)	537
BstV2I	GAAGAC	2 cut(s)	349, 961
BstX2I	RGATCY	1 cut(s)	712
BstXI	CCANNNNNNTGG	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	712
BsuI	GTATCC	2 cut(s)	579, 958
BsuRI	GGCC	7 cut(s)	147, 160, 235, 416, 437, 535, 789
BtsCI	GGATG	3 cut(s)	357, 387, 438
BtsI	GCAGTG	1 cut(s)	6
BtsIMutI	CAGTG	3 cut(s)	6, 396, 924
Cac8I	GCNNGC	5 cut(s)	145, 513, 517, 627, 750
CaiI	CAGNNNCTG	3 cut(s)	635, 854, 1004
CfoI	GCGC	3 cut(s)	256, 551, 1019
Cfr13I	GGNCC	6 cut(s)	137, 146, 152, 158, 533, 534
CseI	GACGC	1 cut(s)	453
Csp6I	GTAC	1 cut(s)	371
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	3 cut(s)	768, 959, 1005
DpnI	GATC	2 cut(s)	50, 714
DpnII	GATC	2 cut(s)	48, 712
EaeI	YGGCCR	1 cut(s)	435
Eco130I	CCWWGG	2 cut(s)	77, 537
Eco24I	GRGCYC	1 cut(s)	537
Eco47I	GGWCC	2 cut(s)	137, 152
Eco47III	AGCGCT	1 cut(s)	1018
Eco57I	CTGAAG	1 cut(s)	864
Eco91I	GGTNACC	1 cut(s)	644
EcoNI	CCTNNNNNAGG	1 cut(s)	153
EcoO109I	RGGNCCY	2 cut(s)	533, 534
EcoO65I	GGTNACC	1 cut(s)	644
EcoRII	CCWGG	7 cut(s)	13, 148, 154, 459, 784, 796, 942
EcoT14I	CCWWGG	2 cut(s)	77, 537
EcoT22I	ATGCAT	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	2 cut(s)	77, 537
Esp3I	CGTCTC	1 cut(s)	471
FauNDI	CATATG	2 cut(s)	277, 411
FbaI	TGATCA	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	670
FokI	GGATG	3 cut(s)	364, 394, 445
FriOI	GRGCYC	1 cut(s)	537
GlaI	GCGC	3 cut(s)	255, 550, 1018
GsaI	CCCAGC	1 cut(s)	875
GsuI	CTGGAG	1 cut(s)	926
HaeII	RGCGCY	2 cut(s)	257, 1020
HaeIII	GGCC	7 cut(s)	147, 160, 235, 416, 437, 535, 789
HapII	CCGG	2 cut(s)	527, 596
HgaI	GACGC	1 cut(s)	453
HhaI	GCGC	3 cut(s)	256, 551, 1019
Hin1I	GRCGYC	1 cut(s)	464
Hin6I	GCGC	3 cut(s)	254, 549, 1017
HinP1I	GCGC	3 cut(s)	254, 549, 1017
HinfI	GANTC	2 cut(s)	562, 810
HpaII	CCGG	2 cut(s)	527, 596
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	3 cut(s)	230, 313, 671
Hpy188I	TCNGA	2 cut(s)	44, 351
Hpy188III	TCNNGA	2 cut(s)	527, 951
Hpy8I	GTNNAC	3 cut(s)	230, 313, 671
HpyAV	CCTTC	1 cut(s)	482
HpyCH4III	ACNGT	2 cut(s)	391, 665
HpyCH4IV	ACGT	1 cut(s)	673
HpyF3I	CTNAG	3 cut(s)	768, 959, 1005
HpySE526I	ACGT	1 cut(s)	673
Hsp92I	GRCGYC	1 cut(s)	464
HspAI	GCGC	3 cut(s)	254, 549, 1017
Kpn2I	TCCGGA	1 cut(s)	526
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	2 cut(s)	48, 712
LmnI	GCTCC	2 cut(s)	462, 945
LweI	GCATC	3 cut(s)	16, 372, 998
MaeII	ACGT	1 cut(s)	673
MaeIII	GTNAC	1 cut(s)	644
MalI	GATC	2 cut(s)	50, 714
MboI	GATC	2 cut(s)	48, 712
MboII	GAAGA	5 cut(s)	349, 571, 722, 813, 966
MfeI	CAATTG	2 cut(s)	210, 452
MflI	RGATCY	1 cut(s)	712
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	4 cut(s)	132, 210, 452, 775
MmeI	TCCRAC	4 cut(s)	273, 329, 555, 563
MnlI	CCTC	9 cut(s)	122, 295, 371, 373, 523, 754, 822, 900, 1000
Mph1103I	ATGCAT	1 cut(s)	325
MroI	TCCGGA	1 cut(s)	526
MseI	TTAA	2 cut(s)	506, 1046
MslI	CAYNNNNRTG	4 cut(s)	36, 280, 318, 431
MspA1I	CMGCKG	4 cut(s)	266, 632, 758, 764
MspI	CCGG	2 cut(s)	527, 596
MspR9I	CCNGG	8 cut(s)	15, 150, 156, 461, 597, 786, 798, 944
MunI	CAATTG	2 cut(s)	210, 452
MvaI	CCWGG	7 cut(s)	15, 150, 156, 461, 786, 798, 944
NciI	CCSGG	1 cut(s)	597
NdeI	CATATG	2 cut(s)	277, 411
NdeII	GATC	2 cut(s)	48, 712
NlaIV	GGNNCC	3 cut(s)	297, 534, 535
NmuCI	GTSAC	1 cut(s)	644
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	9 cut(s)	22, 92, 176, 327, 493, 523, 629, 752, 910
PaeI	GCATGC	2 cut(s)	629, 752
PciI	ACATGT	2 cut(s)	88, 906
PfeI	GAWTC	2 cut(s)	562, 810
Ppu21I	YACGTR	1 cut(s)	674
PscI	ACATGT	2 cut(s)	88, 906
Psp6I	CCWGG	7 cut(s)	13, 148, 154, 459, 784, 796, 942
PspEI	GGTNACC	1 cut(s)	644
PspFI	CCCAGC	1 cut(s)	871
PspGI	CCWGG	7 cut(s)	13, 148, 154, 459, 784, 796, 942
PspN4I	GGNNCC	3 cut(s)	297, 534, 535
PspOMI	GGGCCC	1 cut(s)	533
PspPI	GGNCC	6 cut(s)	137, 146, 152, 158, 533, 534
PstI	CTGCAG	5 cut(s)	594, 727, 742, 757, 763
PstNI	CAGNNNCTG	3 cut(s)	635, 854, 1004
PsuI	RGATCY	1 cut(s)	712
PvuII	CAGCTG	4 cut(s)	266, 632, 758, 764
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
RseI	CAYNNNNRTG	4 cut(s)	36, 280, 318, 431
SaqAI	TTAA	2 cut(s)	506, 1046
Sau3AI	GATC	2 cut(s)	48, 712
Sau96I	GGNCC	6 cut(s)	137, 146, 152, 158, 533, 534
ScrFI	CCNGG	8 cut(s)	15, 150, 156, 461, 597, 786, 798, 944
SduI	GDGCHC	1 cut(s)	537
SfaNI	GCATC	3 cut(s)	16, 372, 998
SfcI	CTRYAG	6 cut(s)	102, 590, 723, 738, 753, 759
SinI	GGWCC	2 cut(s)	137, 152
SmiMI	CAYNNNNRTG	4 cut(s)	36, 280, 318, 431
SphI	GCATGC	2 cut(s)	629, 752
Sse9I	AATT	4 cut(s)	132, 210, 452, 775
SsiI	CCGC	2 cut(s)	638, 707
StyD4I	CCNGG	8 cut(s)	13, 148, 154, 459, 595, 784, 796, 942
StyI	CCWWGG	2 cut(s)	77, 537
TaaI	ACNGT	2 cut(s)	391, 665
TaiI	ACGT	1 cut(s)	676
TasI	AATT	4 cut(s)	132, 210, 452, 775
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	2 cut(s)	562, 810
Tru1I	TTAA	2 cut(s)	506, 1046
Tru9I	TTAA	2 cut(s)	506, 1046
TscAI	CASTG	3 cut(s)	13, 396, 931
TseFI	GTSAC	1 cut(s)	644
Tsp45I	GTSAC	1 cut(s)	644
TspDTI	ATGAA	5 cut(s)	294, 500, 554, 802, 834
TspRI	CASTG	3 cut(s)	13, 396, 931
VpaK11BI	GGWCC	2 cut(s)	137, 152
XagI	CCTNNNNNAGG	1 cut(s)	153
XceI	RCATGY	9 cut(s)	22, 92, 176, 327, 493, 523, 629, 752, 910
XmiI	GTMKAC	1 cut(s)	670
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.