Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8183230.1

Orthogroup ID

OG0002717

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 688

Gene Structure 688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8183230.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 370 bp

ttttttcttgcagccattggcaagtgcatatggccttgccaaacatagggatggccgttgggaatgggcaattgctcctggcgtctccccttctcccagatatcaacatgcagcagtttttgttaatgcacgcttgcatgtttccggaggggcccttggtggtgggcgcatggttgaagattcatcaagtgttggagtgttggatactgcagccggggtttggtgcgatacaaaatctgttgtcatgagtccaaggacaggtagatacagcgctgatgcagctggtggagatgctgcagttgaattgacacggcgttgcaggcatgcagctgctgcggttggtgacctgatatttatatacggtggtcta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_2 Kelch_4 Metallophos

Protein Analysis

123

Amino Acids

12.86

Weight (kDa)

8.76

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08420 AT1G08420 AT2G27210 AT2G27210
fragaria_vesca	FvH4_3g26300
malus_domestica	MD03G1156600.v1.1 MD03G1157300.v1.1 MD11G1174100.v1.1
prunus_persica	Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1
pyrus_communis	pycom03g11040 pycom11g14860
rosa_chinensis	RchiOBHm_Chr5g0048611 RchiOBHm_Chr7g0219991 RchiOBHm_Chr7g0220001
rosa_laevigata	RLG00000034543
rosa_multiflora	Rmu_co8183230.1_g000001 Rmu_co8284673.1_g000001 Rmu_sc0005838.1_g000012 Rmu_sc0005838.1_g000013 Rmu_sc0007553.1_g000001 Rmu_sc0008151.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033170 Rroxscaffold_3G00239830
rosa_rugosa	Rorug05G0240500 Rorug07G0188300
rosa_samantha	Rh5AG319700 Rh5CG355900 Rh7AG332100 Rh7CG349500 Rh7CG349600 Rh7DG327700 Rh7DG327800
rosa_wichuraiana	Rw0G021290 Rw5G029900 Rw7G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	144
AciI	CCGC	1 cut(s)	336
AcoI	YGGCCR	1 cut(s)	53
AcyI	GRCGYC	1 cut(s)	82
AfeI	AGCGCT	1 cut(s)	272
AfiI	CCNNNNNNNGG	3 cut(s)	46, 220, 258
AgsI	TTSAA	2 cut(s)	177, 303
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	2 cut(s)	282, 330
AluI	AGCT	2 cut(s)	282, 330
Alw26I	GTCTC	1 cut(s)	89
AlwNI	CAGNNNCTG	1 cut(s)	333
Aor13HI	TCCGGA	1 cut(s)	144
Aor51HI	AGCGCT	1 cut(s)	272
AoxI	GGCC	3 cut(s)	32, 53, 151
ApaI	GGGCCC	1 cut(s)	155
ApeKI	GCWGC	8 cut(s)	11, 111, 210, 279, 294, 327, 330, 333
AspLEI	GCGC	2 cut(s)	169, 273
AspS9I	GGNCC	2 cut(s)	151, 152
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	354
BaeGI	GKGCMC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	155
BbvI	GCAGC	8 cut(s)	23, 123, 222, 281, 291, 317, 320, 339
BccI	CCATC	1 cut(s)	45
BceAI	ACGGC	2 cut(s)	40, 327
BciT130I	CCWGG	1 cut(s)	79
BciVI	GTATCC	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	89
BfmI	CTRYAG	2 cut(s)	208, 295
BfoI	RGCGCY	1 cut(s)	274
BfuI	GTATCC	1 cut(s)	197
BisI	GCNGC	8 cut(s)	12, 112, 211, 280, 295, 328, 331, 334
BlsI	GCNGC	8 cut(s)	13, 113, 212, 281, 296, 329, 332, 335
Bme1390I	CCNGG	2 cut(s)	79, 215
BmgT120I	GGNCC	2 cut(s)	151, 152
BmiI	GGNNCC	2 cut(s)	152, 153
BmrFI	CCNGG	2 cut(s)	79, 215
BmsI	GCATC	2 cut(s)	266, 281
BpuMI	CCSGG	1 cut(s)	215
BsaHI	GRCGYC	1 cut(s)	82
BsaJI	CCNNGG	3 cut(s)	155, 214, 252
BsaWI	WCCGGW	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 220, 258
BseAI	TCCGGA	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	3 cut(s)	155, 214, 252
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	3 cut(s)	46, 220, 258
BseSI	GKGCMC	1 cut(s)	155
BseXI	GCAGC	8 cut(s)	23, 123, 222, 281, 291, 317, 320, 339
BshFI	GGCC	3 cut(s)	34, 55, 153
BsiSI	CCGG	2 cut(s)	145, 214
BslI	CCNNNNNNNGG	3 cut(s)	46, 220, 258
BsmAI	GTCTC	1 cut(s)	89
BsmBI	CGTCTC	1 cut(s)	89
BsnI	GGCC	3 cut(s)	34, 55, 153
Bsp120I	GGGCCC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp13I	TCCGGA	1 cut(s)	144
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	3 cut(s)	34, 55, 153
BspEI	TCCGGA	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	152, 153
BspMAI	CTGCAG	2 cut(s)	212, 299
BssECI	CCNNGG	3 cut(s)	155, 214, 252
BssNI	GRCGYC	1 cut(s)	82
BssT1I	CCWWGG	2 cut(s)	155, 252
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	1 cut(s)	363
BstACI	GRCGYC	1 cut(s)	82
BstAPI	GCANNNNNTGC	1 cut(s)	333
BstC8I	GCNNGC	4 cut(s)	131, 135, 321, 325
BstEII	GGTNACC	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	56
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	2 cut(s)	169, 273
BstMAI	GTCTC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	3 cut(s)	279, 320, 333
BstNI	CCWGG	1 cut(s)	79
BstNSI	RCATGY	3 cut(s)	111, 141, 327
BstPI	GGTNACC	1 cut(s)	342
BstSCI	CCNGG	2 cut(s)	77, 213
BstSFI	CTRYAG	2 cut(s)	208, 295
BstSLI	GKGCMC	1 cut(s)	155
BstV1I	GCAGC	8 cut(s)	23, 123, 222, 281, 291, 317, 320, 339
BsuI	GTATCC	1 cut(s)	197
BsuRI	GGCC	3 cut(s)	34, 55, 153
BtsCI	GGATG	1 cut(s)	56
Cac8I	GCNNGC	4 cut(s)	131, 135, 321, 325
CaiI	CAGNNNCTG	1 cut(s)	333
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	2 cut(s)	169, 273
Cfr13I	GGNCC	2 cut(s)	151, 152
CseI	GACGC	1 cut(s)	71
CviAII	CATG	5 cut(s)	108, 138, 170, 245, 324
CviJI	RGCY	7 cut(s)	14, 34, 55, 153, 213, 282, 330
CviKI_1	RGCY	7 cut(s)	14, 34, 55, 153, 213, 282, 330
EaeI	YGGCCR	1 cut(s)	53
Eco130I	CCWWGG	2 cut(s)	155, 252
Eco24I	GRGCYC	1 cut(s)	155
Eco32I	GATATC	1 cut(s)	102
Eco47III	AGCGCT	1 cut(s)	272
Eco91I	GGTNACC	1 cut(s)	342
EcoO109I	RGGNCCY	2 cut(s)	151, 152
EcoO65I	GGTNACC	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	77
EcoRV	GATATC	1 cut(s)	102
EcoT14I	CCWWGG	2 cut(s)	155, 252
EcoT38I	GRGCYC	1 cut(s)	155
ErhI	CCWWGG	2 cut(s)	155, 252
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	5 cut(s)	111, 141, 173, 248, 327
FatI	CATG	5 cut(s)	107, 137, 169, 244, 323
FauNDI	CATATG	1 cut(s)	29
Fnu4HI	GCNGC	8 cut(s)	12, 112, 211, 280, 295, 328, 331, 334
FokI	GGATG	1 cut(s)	63
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	8 cut(s)	12, 112, 211, 280, 295, 328, 331, 334
GlaI	GCGC	2 cut(s)	168, 272
GluI	GCNGC	8 cut(s)	12, 112, 211, 280, 295, 328, 331, 334
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	3 cut(s)	34, 55, 153
HapII	CCGG	2 cut(s)	145, 214
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	2 cut(s)	169, 273
Hin1I	GRCGYC	1 cut(s)	82
Hin1II	CATG	5 cut(s)	111, 141, 173, 248, 327
Hin6I	GCGC	2 cut(s)	167, 271
HinP1I	GCGC	2 cut(s)	167, 271
HinfI	GANTC	2 cut(s)	180, 248
HpaII	CCGG	2 cut(s)	145, 214
HphI	GGTGA	1 cut(s)	354
Hpy188III	TCNNGA	2 cut(s)	145, 245
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	363
HpyF10VI	GCNNNNNNNGC	3 cut(s)	279, 320, 333
Hsp92I	GRCGYC	1 cut(s)	82
Hsp92II	CATG	5 cut(s)	111, 141, 173, 248, 327
HspAI	GCGC	2 cut(s)	167, 271
Kpn2I	TCCGGA	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	9 cut(s)	64, 91, 110, 158, 227, 244, 268, 305, 360
Lsp1109I	GCAGC	8 cut(s)	23, 123, 222, 281, 291, 317, 320, 339
LweI	GCATC	2 cut(s)	266, 281
MaeIII	GTNAC	1 cut(s)	342
MboII	GAAGA	1 cut(s)	189
MfeI	CAATTG	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	2 cut(s)	70, 303
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	2 cut(s)	173, 181
MnlI	CCTC	1 cut(s)	141
MroI	TCCGGA	1 cut(s)	144
MseI	TTAA	1 cut(s)	124
MslI	CAYNNNNRTG	1 cut(s)	49
MspA1I	CMGCKG	2 cut(s)	282, 330
MspI	CCGG	2 cut(s)	145, 214
MspR9I	CCNGG	2 cut(s)	79, 215
MunI	CAATTG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	3 cut(s)	279, 320, 333
NciI	CCSGG	1 cut(s)	215
NdeI	CATATG	1 cut(s)	29
NlaIII	CATG	5 cut(s)	111, 141, 173, 248, 327
NlaIV	GGNNCC	2 cut(s)	152, 153
NmuCI	GTSAC	1 cut(s)	342
NspI	RCATGY	3 cut(s)	111, 141, 327
PaeI	GCATGC	1 cut(s)	327
PagI	TCATGA	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	180
PkrI	GCNGC	8 cut(s)	13, 113, 212, 281, 296, 329, 332, 335
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	77
PspEI	GGTNACC	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	2 cut(s)	152, 153
PspOMI	GGGCCC	1 cut(s)	151
PspPI	GGNCC	2 cut(s)	151, 152
PstI	CTGCAG	2 cut(s)	212, 299
PstNI	CAGNNNCTG	1 cut(s)	333
PvuII	CAGCTG	2 cut(s)	282, 330
RseI	CAYNNNNRTG	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	124
SatI	GCNGC	8 cut(s)	12, 112, 211, 280, 295, 328, 331, 334
Sau96I	GGNCC	2 cut(s)	151, 152
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	79, 215
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	4 cut(s)	263, 284, 332, 349
SfaNI	GCATC	2 cut(s)	266, 281
SfcI	CTRYAG	2 cut(s)	208, 295
SmiMI	CAYNNNNRTG	1 cut(s)	49
SphI	GCATGC	1 cut(s)	327
Sse9I	AATT	2 cut(s)	70, 303
SsiI	CCGC	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	77, 213
StyI	CCWWGG	2 cut(s)	155, 252
TaaI	ACNGT	1 cut(s)	363
TasI	AATT	2 cut(s)	70, 303
TfiI	GAWTC	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	124
Tru9I	TTAA	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	342
TseI	GCWGC	8 cut(s)	11, 111, 210, 279, 294, 327, 330, 333
Tsp45I	GTSAC	1 cut(s)	342
TspDTI	ATGAA	1 cut(s)	172
XceI	RCATGY	3 cut(s)	111, 141, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.