Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002717

Physical Location & Seq

Genomic Coordinates Forward (+)

25505149 .. 25506027

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0240500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGTGCTCGAGGTTTCAGTCGAGGAGATCGCAGAGCCGGAGGTCATCCGCGTCTACACCGAGTACCTCCACGACCTCTACACCGTCCACGTGGACTCCAAGCGCATCCTCACCGTCCTCACCGACAACGAAGCCGTCGCCTCCAAGTGGCTCAAGGAGGTCCTCCGCTCCAAAGCCTCCAACACCAAGCCTCCTCTCCCCGGCGCCCCCACCACCTTCAGCCCCGACTCCATCTTCGTCGGCCTCGTCGCCGAGCAACACTCCCCCTTCTACGGCTCCCGCCCCTACGACGAAACCGACCAGACCTTCGACCTCCTCACCCTCTGCGTCGGCTCCCACTGCCTCATGTACGAGCTCCCTGGCTCCGAGTACCGCCCCTGGTGGTCCGACGAGCTTCCCTACGACGACGCGCCCAAGGTCGTCAAGGCCTTCTTCCAAAACCCTAGGGTCGTCGTCCTCGGCACCAACATGGCCAAGGTCGCCAAGAGGCTCGAGGCCAGGCACGGCATCCAGATCAAGAACGCCGTGGATCTGAACCAGCTCGCCGTCAAAGGGATGCAGAGGCACGATCTGGACCTGGCTCGCTACGACTTTGAGAAGCTCACCATGACGGTGCTCGGGAAGGCGTTTGAGGTCATCAAGCCGGAGAGGGTTTACTGGTATCGGAGGCAGGCGTACTGCAACCGCTGGGGAATTTTTTACCGCGAAGACTACGATAGGCTGACGAGCGAGAAGGTCATGTTCACCACTGTGGATGCTTATCTGCGCCTGATGATGTGCTTCAAGCTTCTGGAGGCCATGGACGGTCCTGGTGAGTCCTCTTCCTCCAAGAAGAAGAAGAAGAAGATCAAGAAGAAAACCACCAAAAGGAGCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0016020 GO:0044424 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_2 Kelch_4 Metallophos

Protein Analysis

292

Amino Acids

33.75

Weight (kDa)

8.8

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08420 AT1G08420 AT2G27210 AT2G27210
fragaria_vesca	FvH4_3g26300
malus_domestica	MD03G1156600.v1.1 MD03G1157300.v1.1 MD11G1174100.v1.1
prunus_persica	Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1
pyrus_communis	pycom03g11040 pycom11g14860
rosa_chinensis	RchiOBHm_Chr5g0048611 RchiOBHm_Chr7g0219991 RchiOBHm_Chr7g0220001
rosa_laevigata	RLG00000034543
rosa_multiflora	Rmu_co8183230.1_g000001 Rmu_co8284673.1_g000001 Rmu_sc0005838.1_g000012 Rmu_sc0005838.1_g000013 Rmu_sc0007553.1_g000001 Rmu_sc0008151.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033170 Rroxscaffold_3G00239830
rosa_rugosa	Rorug05G0240500 Rorug07G0188300
rosa_samantha	Rh5AG319700 Rh5CG355900 Rh7AG332100 Rh7CG349500 Rh7CG349600 Rh7DG327700 Rh7DG327800
rosa_wichuraiana	Rw0G021290 Rw5G029900 Rw7G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	203, 461
AccBSI	CCGCTC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	3 cut(s)	51, 410, 705
AciI	CCGC	6 cut(s)	49, 166, 280, 373, 685, 703
AclWI	GGATC	1 cut(s)	537
AcoI	YGGCCR	1 cut(s)	471
AcsI	RAATTY	1 cut(s)	693
AcuI	CTGAAG	1 cut(s)	202
AcvI	CACGTG	1 cut(s)	91
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	4 cut(s)	65, 350, 371, 677
AfiI	CCNNNNNNNGG	5 cut(s)	147, 200, 272, 552, 867
AgsI	TTSAA	1 cut(s)	784
AjnI	CCWGG	5 cut(s)	358, 377, 497, 576, 808
AleI	CACNNNNGTG	1 cut(s)	749
AluBI	AGCT	5 cut(s)	355, 394, 541, 601, 787
AluI	AGCT	5 cut(s)	355, 394, 541, 601, 787
Alw21I	GWGCWC	3 cut(s)	9, 357, 618
AlwI	GGATC	1 cut(s)	537
Ama87I	CYCGRG	3 cut(s)	8, 491, 617
AoxI	GGCC	5 cut(s)	241, 426, 471, 495, 795
ApoI	RAATTY	1 cut(s)	693
ArsI	GACNNNNNNTTYG	4 cut(s)	218, 250, 290, 322
AspA2I	CCTAGG	1 cut(s)	443
AspLEI	GCGC	4 cut(s)	105, 206, 412, 768
AspS9I	GGNCC	4 cut(s)	160, 384, 574, 806
AsuC2I	CCSGG	1 cut(s)	201
AsuHPI	GGTGA	6 cut(s)	103, 112, 310, 595, 736, 824
AvaI	CYCGRG	3 cut(s)	8, 491, 617
AvaII	GGWCC	4 cut(s)	160, 384, 574, 806
AvrII	CCTAGG	1 cut(s)	443
BalI	TGGCCA	1 cut(s)	473
BanI	GGYRCC	2 cut(s)	203, 461
BanII	GRGCYC	1 cut(s)	357
BbrPI	CACGTG	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	714
Bbv12I	GWGCWC	3 cut(s)	9, 357, 618
BccI	CCATC	1 cut(s)	239
BceAI	ACGGC	5 cut(s)	119, 289, 509, 520, 530
BciT130I	CCWGG	5 cut(s)	360, 379, 499, 578, 810
BcnI	CCSGG	1 cut(s)	201
BfaI	CTAG	1 cut(s)	444
BfoI	RGCGCY	1 cut(s)	207
BlnI	CCTAGG	1 cut(s)	443
Bme1390I	CCNGG	6 cut(s)	201, 360, 379, 499, 578, 810
Bme18I	GGWCC	4 cut(s)	160, 384, 574, 806
BmeT110I	CYCGRG	3 cut(s)	8, 491, 617
BmgT120I	GGNCC	4 cut(s)	160, 384, 574, 806
BmiI	GGNNCC	6 cut(s)	205, 277, 334, 364, 463, 872
BmrFI	CCNGG	6 cut(s)	201, 360, 379, 499, 578, 810
BmsI	GCATC	4 cut(s)	114, 516, 546, 745
BpiI	GAAGAC	1 cut(s)	714
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpmI	CTGGAG	1 cut(s)	812
BpuEI	CTTGAG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	759
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	9 cut(s)	199, 358, 377, 414, 443, 457, 474, 525, 798
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 175, 205
Bsc4I	CCNNNNNNNGG	5 cut(s)	147, 200, 272, 552, 867
Bse1I	ACTGG	2 cut(s)	662, 874
Bse8I	GATNNNNATC	1 cut(s)	759
BseBI	CCWGG	5 cut(s)	360, 379, 499, 578, 810
BseDI	CCNNGG	9 cut(s)	199, 358, 377, 414, 443, 457, 474, 525, 798
BseGI	GGATG	5 cut(s)	45, 105, 507, 561, 760
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	5 cut(s)	147, 200, 272, 552, 867
BseNI	ACTGG	2 cut(s)	662, 874
BseRI	GAGGAG	3 cut(s)	38, 183, 305
BseYI	CCCAGC	1 cut(s)	687
Bsh1236I	CGCG	3 cut(s)	51, 410, 705
BshFI	GGCC	5 cut(s)	243, 428, 473, 497, 797
BshNI	GGYRCC	2 cut(s)	203, 461
BsiHKAI	GWGCWC	3 cut(s)	9, 357, 618
BsiHKCI	CYCGRG	3 cut(s)	8, 491, 617
BsiSI	CCGG	3 cut(s)	38, 201, 644
BslI	CCNNNNNNNGG	5 cut(s)	147, 200, 272, 552, 867
BsnI	GGCC	5 cut(s)	243, 428, 473, 497, 797
BsoBI	CYCGRG	3 cut(s)	8, 491, 617
Bsp1286I	GDGCHC	3 cut(s)	9, 357, 618
Bsp143I	GATC	5 cut(s)	27, 513, 529, 568, 846
Bsp19I	CCATGG	1 cut(s)	798
BspACI	CCGC	6 cut(s)	49, 166, 280, 373, 685, 703
BspANI	GGCC	5 cut(s)	243, 428, 473, 497, 797
BspFNI	CGCG	3 cut(s)	51, 410, 705
BspLI	GGNNCC	6 cut(s)	205, 277, 334, 364, 463, 872
BspPI	GGATC	1 cut(s)	537
BspT107I	GGYRCC	2 cut(s)	203, 461
BsrBI	CCGCTC	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	662, 874
BssECI	CCNNGG	9 cut(s)	199, 358, 377, 414, 443, 457, 474, 525, 798
BssMI	GATC	5 cut(s)	27, 513, 529, 568, 846
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	4 cut(s)	414, 443, 474, 798
Bst2UI	CCWGG	5 cut(s)	360, 379, 499, 578, 810
Bst4CI	ACNGT	5 cut(s)	85, 115, 613, 751, 806
Bst6I	CTCTTC	1 cut(s)	826
BstACI	GRCGYC	1 cut(s)	204
BstBAI	YACGTR	1 cut(s)	91
BstC8I	GCNNGC	3 cut(s)	543, 583, 672
BstDSI	CCRYGG	2 cut(s)	525, 798
BstF5I	GGATG	5 cut(s)	45, 105, 507, 561, 760
BstFNI	CGCG	3 cut(s)	51, 410, 705
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	4 cut(s)	105, 206, 412, 768
BstKTI	GATC	5 cut(s)	30, 516, 532, 571, 849
BstMBI	GATC	5 cut(s)	27, 513, 529, 568, 846
BstMWI	GCNNNNNNNGC	2 cut(s)	339, 479
BstNI	CCWGG	5 cut(s)	360, 379, 499, 578, 810
BstSCI	CCNGG	6 cut(s)	199, 358, 377, 497, 576, 808
BstUI	CGCG	3 cut(s)	51, 410, 705
BstV2I	GAAGAC	1 cut(s)	714
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BsuRI	GGCC	5 cut(s)	243, 428, 473, 497, 797
BtgI	CCRYGG	2 cut(s)	525, 798
BtsCI	GGATG	5 cut(s)	45, 105, 507, 561, 760
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	2 cut(s)	337, 747
Cac8I	GCNNGC	3 cut(s)	543, 583, 672
CfoI	GCGC	4 cut(s)	105, 206, 412, 768
Cfr13I	GGNCC	4 cut(s)	160, 384, 574, 806
CseI	GACGC	3 cut(s)	40, 316, 416
Csp6I	GTAC	4 cut(s)	64, 349, 370, 676
CviAII	CATG	5 cut(s)	346, 469, 607, 739, 799
CviQI	GTAC	4 cut(s)	64, 349, 370, 676
DinI	GGCGCC	1 cut(s)	205
DpnI	GATC	5 cut(s)	29, 515, 531, 570, 848
DpnII	GATC	5 cut(s)	27, 513, 529, 568, 846
EaeI	YGGCCR	1 cut(s)	471
Eam1104I	CTCTTC	1 cut(s)	826
EarI	CTCTTC	1 cut(s)	826
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	4 cut(s)	414, 443, 474, 798
Eco147I	AGGCCT	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	357
Eco47I	GGWCC	4 cut(s)	160, 384, 574, 806
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	202
Eco72I	CACGTG	1 cut(s)	91
Eco88I	CYCGRG	3 cut(s)	8, 491, 617
EcoICRI	GAGCTC	1 cut(s)	355
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRII	CCWGG	5 cut(s)	358, 377, 497, 576, 808
EcoT14I	CCWWGG	4 cut(s)	414, 443, 474, 798
EcoT38I	GRGCYC	1 cut(s)	357
EgeI	GGCGCC	1 cut(s)	205
EheI	GGCGCC	1 cut(s)	205
ErhI	CCWWGG	4 cut(s)	414, 443, 474, 798
FaeI	CATG	5 cut(s)	349, 472, 610, 742, 802
FaiI	YATR	5 cut(s)	347, 470, 608, 740, 800
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FatI	CATG	5 cut(s)	345, 468, 606, 738, 798
FauI	CCCGC	1 cut(s)	287
FblI	GTMKAC	1 cut(s)	54
FokI	GGATG	5 cut(s)	32, 92, 494, 568, 767
FriOI	GRGCYC	1 cut(s)	357
FspBI	CTAG	1 cut(s)	444
GlaI	GCGC	4 cut(s)	104, 205, 411, 767
GsaI	CCCAGC	1 cut(s)	691
GsuI	CTGGAG	1 cut(s)	812
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	5 cut(s)	243, 428, 473, 497, 797
HapII	CCGG	3 cut(s)	38, 201, 644
HgaI	GACGC	3 cut(s)	40, 316, 416
HhaI	GCGC	4 cut(s)	105, 206, 412, 768
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	5 cut(s)	349, 472, 610, 742, 802
Hin6I	GCGC	4 cut(s)	103, 204, 410, 766
HinP1I	GCGC	4 cut(s)	103, 204, 410, 766
HindIII	AAGCTT	1 cut(s)	785
HinfI	GANTC	3 cut(s)	95, 227, 815
HpaII	CCGG	3 cut(s)	38, 201, 644
HphI	GGTGA	6 cut(s)	103, 112, 310, 595, 736, 824
Hpy166II	GTNNAC	5 cut(s)	55, 88, 94, 655, 744
Hpy188I	TCNGA	4 cut(s)	367, 388, 534, 666
Hpy188III	TCNNGA	6 cut(s)	511, 517, 572, 619, 791, 850
Hpy8I	GTNNAC	5 cut(s)	55, 88, 94, 655, 744
Hpy99I	CGWCG	9 cut(s)	140, 242, 251, 293, 332, 392, 407, 410, 455
HpyAV	CCTTC	6 cut(s)	226, 277, 316, 439, 616, 727
HpyCH4III	ACNGT	5 cut(s)	85, 115, 613, 751, 806
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	2 cut(s)	559, 681
HpyF10VI	GCNNNNNNNGC	2 cut(s)	339, 479
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	5 cut(s)	349, 472, 610, 742, 802
HspAI	GCGC	4 cut(s)	103, 204, 410, 766
KasI	GGCGCC	1 cut(s)	203
Kzo9I	GATC	5 cut(s)	27, 513, 529, 568, 846
LmnI	GCTCC	6 cut(s)	173, 281, 338, 360, 368, 870
LweI	GCATC	4 cut(s)	114, 516, 546, 745
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	1 cut(s)	90
MalI	GATC	5 cut(s)	29, 515, 531, 570, 848
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	5 cut(s)	27, 513, 529, 568, 846
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	3 cut(s)	9, 357, 618
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	1 cut(s)	693
MluNI	TGGCCA	1 cut(s)	473
Mly113I	GGCGCC	1 cut(s)	204
MlyI	GAGTC	3 cut(s)	89, 221, 824
MmeI	TCCRAC	2 cut(s)	204, 411
Mox20I	TGGCCA	1 cut(s)	473
MscI	TGGCCA	1 cut(s)	473
MslI	CAYNNNNRTG	3 cut(s)	467, 611, 749
Msp20I	TGGCCA	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	687
MspI	CCGG	3 cut(s)	38, 201, 644
MspR9I	CCNGG	6 cut(s)	201, 360, 379, 499, 578, 810
MvaI	CCWGG	5 cut(s)	360, 379, 499, 578, 810
MvnI	CGCG	3 cut(s)	51, 410, 705
MwoI	GCNNNNNNNGC	2 cut(s)	339, 479
NarI	GGCGCC	1 cut(s)	204
NciI	CCSGG	1 cut(s)	201
NcoI	CCATGG	1 cut(s)	798
NdeII	GATC	5 cut(s)	27, 513, 529, 568, 846
NlaIII	CATG	5 cut(s)	349, 472, 610, 742, 802
NlaIV	GGNNCC	6 cut(s)	205, 277, 334, 364, 463, 872
NmeAIII	GCCGAG	2 cut(s)	277, 438
OliI	CACNNNNGTG	1 cut(s)	749
PaeR7I	CTCGAG	2 cut(s)	8, 491
PceI	AGGCCT	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 294
PleI	GAGTC	3 cut(s)	89, 221, 823
PluTI	GGCGCC	1 cut(s)	207
PmaCI	CACGTG	1 cut(s)	91
PmlI	CACGTG	1 cut(s)	91
PpsI	GAGTC	3 cut(s)	89, 221, 823
Ppu21I	YACGTR	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	160
Psp124BI	GAGCTC	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	5 cut(s)	358, 377, 497, 576, 808
PspCI	CACGTG	1 cut(s)	91
PspFI	CCCAGC	1 cut(s)	687
PspGI	CCWGG	5 cut(s)	358, 377, 497, 576, 808
PspN4I	GGNNCC	6 cut(s)	205, 277, 334, 364, 463, 872
PspPI	GGNCC	4 cut(s)	160, 384, 574, 806
PspPPI	RGGWCCY	1 cut(s)	160
PspXI	VCTCGAGB	2 cut(s)	8, 491
PsuI	RGATCY	1 cut(s)	529
RsaI	GTAC	4 cut(s)	65, 350, 371, 677
RsaNI	GTAC	4 cut(s)	64, 349, 370, 676
RseI	CAYNNNNRTG	3 cut(s)	467, 611, 749
SacI	GAGCTC	1 cut(s)	357
Sau3AI	GATC	5 cut(s)	27, 513, 529, 568, 846
Sau96I	GGNCC	4 cut(s)	160, 384, 574, 806
SchI	GAGTC	3 cut(s)	89, 221, 824
ScrFI	CCNGG	6 cut(s)	201, 360, 379, 499, 578, 810
SduI	GDGCHC	3 cut(s)	9, 357, 618
SfaNI	GCATC	4 cut(s)	114, 516, 546, 745
SfoI	GGCGCC	1 cut(s)	205
Sfr274I	CTCGAG	2 cut(s)	8, 491
SinI	GGWCC	4 cut(s)	160, 384, 574, 806
SlaI	CTCGAG	2 cut(s)	8, 491
SmiMI	CAYNNNNRTG	3 cut(s)	467, 611, 749
SmlI	CTYRAG	3 cut(s)	8, 152, 491
SmoI	CTYRAG	3 cut(s)	8, 152, 491
Sse9I	AATT	1 cut(s)	693
SseBI	AGGCCT	1 cut(s)	428
SsiI	CCGC	6 cut(s)	49, 166, 280, 373, 685, 703
SspDI	GGCGCC	1 cut(s)	203
SspMI	CTAG	1 cut(s)	444
SstI	GAGCTC	1 cut(s)	357
StuI	AGGCCT	1 cut(s)	428
StyD4I	CCNGG	6 cut(s)	199, 358, 377, 497, 576, 808
StyI	CCWWGG	4 cut(s)	414, 443, 474, 798
TaaI	ACNGT	5 cut(s)	85, 115, 613, 751, 806
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	4 cut(s)	9, 21, 309, 492
TasI	AATT	1 cut(s)	693
TscAI	CASTG	2 cut(s)	344, 754
TspRI	CASTG	2 cut(s)	344, 754
VpaK11BI	GGWCC	4 cut(s)	160, 384, 574, 806
XapI	RAATTY	1 cut(s)	693
XhoI	CTCGAG	2 cut(s)	8, 491
XmaJI	CCTAGG	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.