Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002717

Physical Location & Seq

Genomic Coordinates Forward (+)

30713020 .. 30714591

Gene Structure 1572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCAACCTACAAATATCTCGAATAGCCAAGCTCTTATTGATTCGTTCATTAATTCTCTAATTATTTCTGAGTGGAATGTGTCTGAGGGGAAGTCAACTGGGAAGAAATGGGCATATTTAGCGTATTCTAGGTGTGGCTATGTAGTGGTTAATGGATGGTTGTTGCTTGATGACCTACTGGTTGCGGAAGATCTGGCTGCTGCAGAAACAACAACTGCACCCTCGCATGCTGCAGCTGCAGCTGCTCAGTCTAATTTACCACCAGGCCGTTTTCCTGGAAGATATGGATTCATTGATGAAAGAACGAGGCAGATAATGCCTGAAGCAGCACCTGATGGTGCTGTTGTGCTGGGAAATCCAGTTGCCCCACCTGTAAATGGAGACATGTATACTGATATAAGCACTGAAAATGCCTTGCTCCAGGGATCCAGGAGACTGAGTATAGGTGTAGAGTATTTAGTTGAAGCATCAGCAGCAGAAGCTGAGGCAATCAGCGCTACTTTGGCTGCTGCCAAGGCACGACAAGTTAATGGAGAAGTCAGAACTCAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0016020 GO:0044424 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_2 Kelch_4 Metallophos

Protein Analysis

184

Amino Acids

19.51

Weight (kDa)

4.79

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08420 AT1G08420 AT2G27210 AT2G27210
fragaria_vesca	FvH4_3g26300
malus_domestica	MD03G1156600.v1.1 MD03G1157300.v1.1 MD11G1174100.v1.1
prunus_persica	Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1
pyrus_communis	pycom03g11040 pycom11g14860
rosa_chinensis	RchiOBHm_Chr5g0048611 RchiOBHm_Chr7g0219991 RchiOBHm_Chr7g0220001
rosa_laevigata	RLG00000034543
rosa_multiflora	Rmu_co8183230.1_g000001 Rmu_co8284673.1_g000001 Rmu_sc0005838.1_g000012 Rmu_sc0005838.1_g000013 Rmu_sc0007553.1_g000001 Rmu_sc0008151.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033170 Rroxscaffold_3G00239830
rosa_rugosa	Rorug05G0240500 Rorug07G0188300
rosa_samantha	Rh5AG319700 Rh5CG355900 Rh7AG332100 Rh7CG349500 Rh7CG349600 Rh7DG327700 Rh7DG327800
rosa_wichuraiana	Rw0G021290 Rw5G029900 Rw7G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	389
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	2 cut(s)	420, 433
AcuI	CTGAAG	1 cut(s)	342
AfeI	AGCGCT	1 cut(s)	496
AfiI	CCNNNNNNNGG	1 cut(s)	377
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	1 cut(s)	464
AjnI	CCWGG	4 cut(s)	262, 274, 420, 428
AluBI	AGCT	4 cut(s)	32, 236, 242, 482
AluI	AGCT	4 cut(s)	32, 236, 242, 482
Alw26I	GTCTC	2 cut(s)	375, 427
AlwI	GGATC	2 cut(s)	420, 433
AlwNI	CAGNNNCTG	2 cut(s)	332, 482
Aor51HI	AGCGCT	1 cut(s)	496
AoxI	GGCC	1 cut(s)	265
AseI	ATTAAT	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	497
BamHI	GGATCC	1 cut(s)	425
BbvCI	CCTCAGC	1 cut(s)	483
BccI	CCATC	2 cut(s)	150, 329
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	4 cut(s)	264, 276, 422, 430
BcoDI	GTCTC	2 cut(s)	375, 427
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	3 cut(s)	201, 231, 237
BfoI	RGCGCY	1 cut(s)	498
BglII	AGATCT	1 cut(s)	190
Bme1390I	CCNGG	4 cut(s)	264, 276, 422, 430
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	4 cut(s)	264, 276, 422, 430
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	1 cut(s)	476
BmuI	ACTGGG	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	421, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse1I	ACTGG	3 cut(s)	103, 183, 359
BseBI	CCWGG	4 cut(s)	264, 276, 422, 430
BseDI	CCNNGG	2 cut(s)	421, 513
BseGI	GGATG	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMII	CTCAG	5 cut(s)	60, 75, 260, 428, 474
BseNI	ACTGG	3 cut(s)	103, 183, 359
BseYI	CCCAGC	1 cut(s)	349
BsgI	GTGCAG	1 cut(s)	201
BshFI	GGCC	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmAI	GTCTC	2 cut(s)	375, 427
BsnI	GGCC	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	190, 425
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	5 cut(s)	61, 76, 259, 429, 475
BspLI	GGNNCC	1 cut(s)	427
BspMAI	CTGCAG	3 cut(s)	205, 235, 241
BspPI	GGATC	2 cut(s)	420, 433
BsrI	ACTGG	3 cut(s)	103, 183, 359
BssECI	CCNNGG	2 cut(s)	421, 513
BssMI	GATC	2 cut(s)	190, 425
BssNAI	GTATAC	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	513
Bst1107I	GTATAC	1 cut(s)	390
Bst2UI	CCWGG	4 cut(s)	264, 276, 422, 430
BstAPI	GCANNNNNTGC	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	6 cut(s)	69, 84, 246, 437, 483, 546
BstF5I	GGATG	1 cut(s)	161
BstH2I	RGCGCY	1 cut(s)	498
BstHHI	GCGC	1 cut(s)	497
BstKTI	GATC	2 cut(s)	193, 428
BstMAI	GTCTC	2 cut(s)	375, 427
BstMBI	GATC	2 cut(s)	190, 425
BstNI	CCWGG	4 cut(s)	264, 276, 422, 430
BstNSI	RCATGY	2 cut(s)	230, 388
BstSCI	CCNGG	4 cut(s)	262, 274, 420, 428
BstSFI	CTRYAG	3 cut(s)	201, 231, 237
BstX2I	RGATCY	2 cut(s)	190, 425
BstYI	RGATCY	2 cut(s)	190, 425
BstZ17I	GTATAC	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	1 cut(s)	228
CaiI	CAGNNNCTG	2 cut(s)	332, 482
CfoI	GCGC	1 cut(s)	497
CviAII	CATG	2 cut(s)	227, 385
CviJI	RGCY	9 cut(s)	27, 32, 138, 197, 236, 242, 267, 482, 506
CviKI_1	RGCY	9 cut(s)	27, 32, 138, 197, 236, 242, 267, 482, 506
DdeI	CTNAG	6 cut(s)	69, 84, 246, 437, 483, 546
DpnI	GATC	2 cut(s)	192, 427
DpnII	GATC	2 cut(s)	190, 425
Eco130I	CCWWGG	1 cut(s)	513
Eco47III	AGCGCT	1 cut(s)	496
Eco57I	CTGAAG	1 cut(s)	342
EcoRII	CCWGG	4 cut(s)	262, 274, 420, 428
EcoT14I	CCWWGG	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	2 cut(s)	230, 388
FaiI	YATR	8 cut(s)	115, 141, 228, 285, 386, 390, 398, 443
FatI	CATG	2 cut(s)	226, 384
FblI	GTMKAC	1 cut(s)	389
FokI	GGATG	1 cut(s)	168
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	1 cut(s)	496
GsaI	CCCAGC	1 cut(s)	353
GsuI	CTGGAG	1 cut(s)	404
HaeII	RGCGCY	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	267
HhaI	GCGC	1 cut(s)	497
Hin1II	CATG	2 cut(s)	230, 388
Hin6I	GCGC	1 cut(s)	495
HinP1I	GCGC	1 cut(s)	495
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HinfI	GANTC	2 cut(s)	41, 288
Hpy166II	GTNNAC	2 cut(s)	96, 390
Hpy188I	TCNGA	4 cut(s)	70, 85, 542, 549
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	2 cut(s)	96, 390
HpyCH4V	TGCA	5 cut(s)	4, 203, 218, 233, 239
HpyF3I	CTNAG	6 cut(s)	69, 84, 246, 437, 483, 546
Hsp92II	CATG	2 cut(s)	230, 388
HspAI	GCGC	1 cut(s)	495
Kzo9I	GATC	2 cut(s)	190, 425
LmnI	GCTCC	1 cut(s)	423
LweI	GCATC	1 cut(s)	476
MaeI	CTAG	1 cut(s)	129
MalI	GATC	2 cut(s)	192, 427
MboI	GATC	2 cut(s)	190, 425
MboII	GAAGA	3 cut(s)	115, 200, 291
MflI	RGATCY	2 cut(s)	190, 425
MluCI	AATT	3 cut(s)	52, 60, 253
MnlI	CCTC	4 cut(s)	79, 232, 300, 478
MseI	TTAA	3 cut(s)	51, 150, 528
MspA1I	CMGCKG	2 cut(s)	236, 242
MspR9I	CCNGG	4 cut(s)	264, 276, 422, 430
MvaI	CCWGG	4 cut(s)	264, 276, 422, 430
NdeII	GATC	2 cut(s)	190, 425
NlaIII	CATG	2 cut(s)	230, 388
NlaIV	GGNNCC	1 cut(s)	427
NspI	RCATGY	2 cut(s)	230, 388
PaeI	GCATGC	1 cut(s)	230
PciI	ACATGT	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	41, 288
PfoI	TCCNGGA	2 cut(s)	274, 428
PscI	ACATGT	1 cut(s)	384
PshBI	ATTAAT	1 cut(s)	51
Psp6I	CCWGG	4 cut(s)	262, 274, 420, 428
PspFI	CCCAGC	1 cut(s)	349
PspGI	CCWGG	4 cut(s)	262, 274, 420, 428
PspN4I	GGNNCC	1 cut(s)	427
PstI	CTGCAG	3 cut(s)	205, 235, 241
PstNI	CAGNNNCTG	2 cut(s)	332, 482
PsuI	RGATCY	2 cut(s)	190, 425
PvuII	CAGCTG	2 cut(s)	236, 242
SaqAI	TTAA	3 cut(s)	51, 150, 528
Sau3AI	GATC	2 cut(s)	190, 425
ScrFI	CCNGG	4 cut(s)	264, 276, 422, 430
SfaNI	GCATC	1 cut(s)	476
SfcI	CTRYAG	3 cut(s)	201, 231, 237
SphI	GCATGC	1 cut(s)	230
Sse9I	AATT	3 cut(s)	52, 60, 253
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	4 cut(s)	262, 274, 420, 428
StyI	CCWWGG	1 cut(s)	513
TaqI	TCGA	1 cut(s)	20
TasI	AATT	3 cut(s)	52, 60, 253
TfiI	GAWTC	2 cut(s)	41, 288
Tru1I	TTAA	3 cut(s)	51, 150, 528
Tru9I	TTAA	3 cut(s)	51, 150, 528
TscAI	CASTG	1 cut(s)	409
TspDTI	ATGAA	3 cut(s)	37, 280, 312
TspRI	CASTG	1 cut(s)	409
VspI	ATTAAT	1 cut(s)	51
XceI	RCATGY	2 cut(s)	230, 388
XmiI	GTMKAC	1 cut(s)	389
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.