Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002717

Physical Location & Seq

Genomic Coordinates Reverse (-)

15163446 .. 15169110

Gene Structure 5665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g14860.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCATTAGTGGGGCAAAGATATCTTATGGCAATTGGTGGGAATGATGGAAAACGGCCATTAGCTGATGTTTGGGCTCTCGACACAGCTGCCAAACCTTACGAATGGCGTAAGTTGGAACCAGAGGGGGAGGGTCCACCACCATGCATGTATGCAACTGCAAGTGCAAGGTCTGATGGTCTTCTCCTCCTCTGCGGAGGGAGGGATGCAAATAGTGTGCCATTGGCAAGCGCATATGGTCTTGCCAAACATAGGGATGGCCGTTGGGAATGGGCAATTGCTCCTGGTGTTTCACCTTCTTCAAGATATCAACATGCAGCAGTCTTTGTTAATGCACGTCTGCATGTTTCTGGAGGGGCCCTTGGTGGTGGCCGCATGGTTGAAGATTCATCAAGTGTTGCAGTGTTGGATACTGCAGCAGGAGTTTGGTGTGATACAAAATCTGTGGTTACTAGTCCAAGGACAGGTAGATACAGTGCTGATGCAGCCGGTGGGGATGCTGCAGTTGAGCTGACAAGGCGTTGCAGGCATGCAGCTGCAGCGGTTGGTGACTTGATCTTTATATATGGTGGTCTACGTGGCGGAGTGCTGCTTGATGACCTACTTGTTGCGGAAGATTTGGCTGCTGCTGAAACAACAACTGCAGCTTCGCATGCTGCAGCTGCAGCTGCTCAATCTGTACAAGGTCGTTTATCTGGAAGGTATGGATTCATTGATGACAGAGCAAGGCAGTTGCCCGAAGCAGCCCCTGATGGTGCTGTTGTGCTGGGAAATCCAGTTGCCCCCCCAGTAAATGGTGACATGTATACTGATATAAGTACTGAAAATGCTTTGCTCCAGGGAACCCGGAGAATTAGCAAAGGTGTAGAGTACTTAGTTGAAGCATCAGCAGCAGAAGCTGAGGCAATCAGTGCCACTTTGGCTGCTGCCAAGGCACGACAAGTTAATGGAGAAGTTGAACTACCTGATAGAGATCGTGGTTCAGAGGCTACCCCCAGTGGGAAGCAGATATCTACCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0016020 GO:0044424 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_2 Kelch_4 Metallophos

Protein Analysis

341

Amino Acids

35.23

Weight (kDa)

5.27

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08420 AT1G08420 AT2G27210 AT2G27210
fragaria_vesca	FvH4_3g26300
malus_domestica	MD03G1156600.v1.1 MD03G1157300.v1.1 MD11G1174100.v1.1
prunus_persica	Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1
pyrus_communis	pycom03g11040 pycom11g14860
rosa_chinensis	RchiOBHm_Chr5g0048611 RchiOBHm_Chr7g0219991 RchiOBHm_Chr7g0220001
rosa_laevigata	RLG00000034543
rosa_multiflora	Rmu_co8183230.1_g000001 Rmu_co8284673.1_g000001 Rmu_sc0005838.1_g000012 Rmu_sc0005838.1_g000013 Rmu_sc0007553.1_g000001 Rmu_sc0008151.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033170 Rroxscaffold_3G00239830
rosa_rugosa	Rorug05G0240500 Rorug07G0188300
rosa_samantha	Rh5AG319700 Rh5CG355900 Rh7AG332100 Rh7CG349500 Rh7CG349600 Rh7DG327700 Rh7DG327800
rosa_wichuraiana	Rw0G021290 Rw5G029900 Rw7G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	794
AccI	GTMKAC	2 cut(s)	574, 806
AciI	CCGC	5 cut(s)	195, 373, 542, 582, 611
AcoI	YGGCCR	3 cut(s)	56, 259, 370
AfaI	GTAC	3 cut(s)	681, 820, 872
AfiI	CCNNNNNNNGG	4 cut(s)	252, 464, 794, 999
AflIII	ACRYGT	1 cut(s)	801
AgsI	TTSAA	4 cut(s)	303, 383, 881, 959
AhlI	ACTAGT	1 cut(s)	452
AjiI	CACGTC	1 cut(s)	338
AjnI	CCWGG	2 cut(s)	283, 837
AluBI	AGCT	8 cut(s)	65, 89, 511, 536, 647, 662, 668, 899
AluI	AGCT	8 cut(s)	65, 89, 511, 536, 647, 662, 668, 899
AlwNI	CAGNNNCTG	2 cut(s)	749, 899
AoxI	GGCC	4 cut(s)	56, 259, 357, 370
ApaI	GGGCCC	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	3 cut(s)	134, 357, 358
AsuC2I	CCSGG	1 cut(s)	847
AsuHPI	GGTGA	3 cut(s)	285, 560, 809
AvaII	GGWCC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	361
BanII	GRGCYC	2 cut(s)	79, 361
BarI	GAAGNNNNNNTAC	2 cut(s)	945, 977
BbsI	GAAGAC	1 cut(s)	173
BbvCI	CCTCAGC	1 cut(s)	900
BccI	CCATC	4 cut(s)	41, 170, 251, 746
BceAI	ACGGC	2 cut(s)	71, 246
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	2 cut(s)	285, 839
BciVI	GTATCC	1 cut(s)	403
BcnI	CCSGG	1 cut(s)	847
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	1 cut(s)	453
BfmI	CTRYAG	6 cut(s)	414, 501, 537, 642, 657, 663
BfuI	GTATCC	1 cut(s)	403
BglI	GCCNNNNNGGC	1 cut(s)	920
BmcAI	AGTACT	2 cut(s)	820, 872
Bme1390I	CCNGG	3 cut(s)	285, 839, 847
Bme18I	GGWCC	1 cut(s)	134
BmgBI	CACGTC	1 cut(s)	338
BmgT120I	GGNCC	3 cut(s)	134, 357, 358
BmiI	GGNNCC	5 cut(s)	120, 135, 358, 359, 844
BmrFI	CCNGG	3 cut(s)	285, 839, 847
BmrI	ACTGGG	2 cut(s)	782, 990
BmsI	GCATC	4 cut(s)	196, 472, 487, 893
BmuI	ACTGGG	2 cut(s)	782, 990
BpiI	GAAGAC	1 cut(s)	173
BpmI	CTGGAG	2 cut(s)	372, 821
Bpu10I	CCTNAGC	1 cut(s)	900
BpuMI	CCSGG	1 cut(s)	847
BsaAI	YACGTR	1 cut(s)	578
BsaBI	GATNNNNATC	1 cut(s)	972
BsaJI	CCNNGG	4 cut(s)	361, 458, 838, 930
Bsc4I	CCNNNNNNNGG	4 cut(s)	252, 464, 794, 999
Bse118I	RCCGGY	1 cut(s)	488
Bse1I	ACTGG	3 cut(s)	776, 788, 996
Bse8I	GATNNNNATC	1 cut(s)	972
BseBI	CCWGG	2 cut(s)	285, 839
BseDI	CCNNGG	4 cut(s)	361, 458, 838, 930
BseGI	GGATG	3 cut(s)	211, 262, 502
BseJI	GATNNNNATC	1 cut(s)	972
BseLI	CCNNNNNNNGG	4 cut(s)	252, 464, 794, 999
BseMII	CTCAG	1 cut(s)	891
BseNI	ACTGG	3 cut(s)	776, 788, 996
BseRI	GAGGAG	2 cut(s)	176, 179
BseSI	GKGCMC	1 cut(s)	361
BseYI	CCCAGC	1 cut(s)	766
BshFI	GGCC	4 cut(s)	58, 261, 359, 372
BsiSI	CCGG	2 cut(s)	489, 847
BslI	CCNNNNNNNGG	4 cut(s)	252, 464, 794, 999
BsnI	GGCC	4 cut(s)	58, 261, 359, 372
Bsp120I	GGGCCC	1 cut(s)	357
Bsp1286I	GDGCHC	2 cut(s)	79, 361
Bsp1407I	TGTACA	1 cut(s)	679
Bsp143I	GATC	2 cut(s)	555, 973
BspACI	CCGC	5 cut(s)	195, 373, 542, 582, 611
BspANI	GGCC	4 cut(s)	58, 261, 359, 372
BspCNI	CTCAG	1 cut(s)	892
BspLI	GGNNCC	5 cut(s)	120, 135, 358, 359, 844
BspMAI	CTGCAG	6 cut(s)	418, 505, 541, 646, 661, 667
BsrFI	RCCGGY	1 cut(s)	488
BsrGI	TGTACA	1 cut(s)	679
BsrI	ACTGG	3 cut(s)	776, 788, 996
BssAI	RCCGGY	1 cut(s)	488
BssECI	CCNNGG	4 cut(s)	361, 458, 838, 930
BssMI	GATC	2 cut(s)	555, 973
BssNAI	GTATAC	1 cut(s)	807
BssT1I	CCWWGG	3 cut(s)	361, 458, 930
Bst1107I	GTATAC	1 cut(s)	807
Bst2UI	CCWGG	2 cut(s)	285, 839
Bst4CI	ACNGT	1 cut(s)	476
BstAPI	GCANNNNNTGC	1 cut(s)	911
BstAUI	TGTACA	1 cut(s)	679
BstBAI	YACGTR	1 cut(s)	578
BstC8I	GCNNGC	4 cut(s)	229, 527, 531, 654
BstDEI	CTNAG	2 cut(s)	874, 900
BstF5I	GGATG	3 cut(s)	211, 262, 502
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	2 cut(s)	558, 976
BstMBI	GATC	2 cut(s)	555, 973
BstNI	CCWGG	2 cut(s)	285, 839
BstNSI	RCATGY	6 cut(s)	151, 317, 347, 533, 656, 805
BstSCI	CCNGG	3 cut(s)	283, 837, 845
BstSFI	CTRYAG	6 cut(s)	414, 501, 537, 642, 657, 663
BstSLI	GKGCMC	1 cut(s)	361
BstV2I	GAAGAC	1 cut(s)	173
BstZ17I	GTATAC	1 cut(s)	807
BsuI	GTATCC	1 cut(s)	403
BsuRI	GGCC	4 cut(s)	58, 261, 359, 372
BtrI	CACGTC	1 cut(s)	338
BtsCI	GGATG	3 cut(s)	211, 262, 502
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	4 cut(s)	408, 481, 916, 1003
Cac8I	GCNNGC	4 cut(s)	229, 527, 531, 654
CaiI	CAGNNNCTG	2 cut(s)	749, 899
CfoI	GCGC	1 cut(s)	233
Cfr10I	RCCGGY	1 cut(s)	488
Cfr13I	GGNCC	3 cut(s)	134, 357, 358
Csp6I	GTAC	3 cut(s)	680, 819, 871
CspCI	CAANNNNNGTGG	2 cut(s)	426, 461
CviAII	CATG	8 cut(s)	144, 148, 314, 344, 376, 530, 653, 802
CviQI	GTAC	3 cut(s)	680, 819, 871
DdeI	CTNAG	2 cut(s)	874, 900
DpnI	GATC	2 cut(s)	557, 975
DpnII	GATC	2 cut(s)	555, 973
EaeI	YGGCCR	3 cut(s)	56, 259, 370
EciI	GGCGGA	1 cut(s)	597
Eco130I	CCWWGG	3 cut(s)	361, 458, 930
Eco24I	GRGCYC	2 cut(s)	79, 361
Eco32I	GATATC	3 cut(s)	23, 308, 1011
Eco47I	GGWCC	1 cut(s)	134
EcoO109I	RGGNCCY	2 cut(s)	357, 358
EcoRII	CCWGG	2 cut(s)	283, 837
EcoRV	GATATC	3 cut(s)	23, 308, 1011
EcoT14I	CCWWGG	3 cut(s)	361, 458, 930
EcoT22I	ATGCAT	1 cut(s)	149
EcoT38I	GRGCYC	2 cut(s)	79, 361
ErhI	CCWWGG	3 cut(s)	361, 458, 930
FaeI	CATG	8 cut(s)	147, 151, 317, 347, 379, 533, 656, 805
FatI	CATG	8 cut(s)	143, 147, 313, 343, 375, 529, 652, 801
FauNDI	CATATG	1 cut(s)	235
FblI	GTMKAC	2 cut(s)	574, 806
FokI	GGATG	3 cut(s)	218, 269, 509
FriOI	GRGCYC	2 cut(s)	79, 361
FspBI	CTAG	1 cut(s)	453
GlaI	GCGC	1 cut(s)	232
GsaI	CCCAGC	1 cut(s)	770
GsuI	CTGGAG	2 cut(s)	372, 821
HaeIII	GGCC	4 cut(s)	58, 261, 359, 372
HapII	CCGG	2 cut(s)	489, 847
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	8 cut(s)	147, 151, 317, 347, 379, 533, 656, 805
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	2 cut(s)	386, 708
HpaII	CCGG	2 cut(s)	489, 847
HphI	GGTGA	3 cut(s)	285, 560, 809
Hpy166II	GTNNAC	3 cut(s)	137, 575, 807
Hpy188I	TCNGA	2 cut(s)	175, 985
Hpy188III	TCNNGA	4 cut(s)	80, 303, 351, 696
Hpy8I	GTNNAC	3 cut(s)	137, 575, 807
HpyAV	CCTTC	2 cut(s)	306, 693
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4IV	ACGT	2 cut(s)	337, 577
HpyF3I	CTNAG	2 cut(s)	874, 900
HpySE526I	ACGT	2 cut(s)	337, 577
Hsp92II	CATG	8 cut(s)	147, 151, 317, 347, 379, 533, 656, 805
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	2 cut(s)	555, 973
LmnI	GCTCC	2 cut(s)	286, 840
LweI	GCATC	4 cut(s)	196, 472, 487, 893
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	2 cut(s)	337, 577
MaeIII	GTNAC	3 cut(s)	448, 548, 797
MalI	GATC	2 cut(s)	557, 975
MboI	GATC	2 cut(s)	555, 973
MboII	GAAGA	4 cut(s)	173, 291, 395, 626
MfeI	CAATTG	2 cut(s)	33, 276
MhlI	GDGCHC	2 cut(s)	79, 361
MluCI	AATT	3 cut(s)	33, 276, 852
MmeI	TCCRAC	2 cut(s)	96, 387
MnlI	CCTC	9 cut(s)	118, 124, 191, 195, 197, 200, 347, 895, 979
Mph1103I	ATGCAT	1 cut(s)	149
MseI	TTAA	2 cut(s)	330, 945
MslI	CAYNNNNRTG	2 cut(s)	142, 255
MspA1I	CMGCKG	5 cut(s)	89, 536, 542, 662, 668
MspI	CCGG	2 cut(s)	489, 847
MspR9I	CCNGG	3 cut(s)	285, 839, 847
MunI	CAATTG	2 cut(s)	33, 276
MvaI	CCWGG	2 cut(s)	285, 839
NciI	CCSGG	1 cut(s)	847
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	2 cut(s)	555, 973
NlaIII	CATG	8 cut(s)	147, 151, 317, 347, 379, 533, 656, 805
NlaIV	GGNNCC	5 cut(s)	120, 135, 358, 359, 844
NmuCI	GTSAC	2 cut(s)	548, 797
NsiI	ATGCAT	1 cut(s)	149
NspI	RCATGY	6 cut(s)	151, 317, 347, 533, 656, 805
PaeI	GCATGC	2 cut(s)	533, 656
PciI	ACATGT	1 cut(s)	801
PfeI	GAWTC	2 cut(s)	386, 708
PflMI	CCANNNNNTGG	1 cut(s)	794
Ppu21I	YACGTR	1 cut(s)	578
PscI	ACATGT	1 cut(s)	801
Psp6I	CCWGG	2 cut(s)	283, 837
PspFI	CCCAGC	1 cut(s)	766
PspGI	CCWGG	2 cut(s)	283, 837
PspN4I	GGNNCC	5 cut(s)	120, 135, 358, 359, 844
PspOMI	GGGCCC	1 cut(s)	357
PspPI	GGNCC	3 cut(s)	134, 357, 358
PstI	CTGCAG	6 cut(s)	418, 505, 541, 646, 661, 667
PstNI	CAGNNNCTG	2 cut(s)	749, 899
PvuII	CAGCTG	4 cut(s)	89, 536, 662, 668
RsaI	GTAC	3 cut(s)	681, 820, 872
RsaNI	GTAC	3 cut(s)	680, 819, 871
RseI	CAYNNNNRTG	2 cut(s)	142, 255
SaqAI	TTAA	2 cut(s)	330, 945
Sau3AI	GATC	2 cut(s)	555, 973
Sau96I	GGNCC	3 cut(s)	134, 357, 358
ScaI	AGTACT	2 cut(s)	820, 872
ScrFI	CCNGG	3 cut(s)	285, 839, 847
SduI	GDGCHC	2 cut(s)	79, 361
SfaNI	GCATC	4 cut(s)	196, 472, 487, 893
SfcI	CTRYAG	6 cut(s)	414, 501, 537, 642, 657, 663
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	2 cut(s)	142, 255
SpeI	ACTAGT	1 cut(s)	452
SphI	GCATGC	2 cut(s)	533, 656
Sse9I	AATT	3 cut(s)	33, 276, 852
SsiI	CCGC	5 cut(s)	195, 373, 542, 582, 611
SspMI	CTAG	1 cut(s)	453
StyD4I	CCNGG	3 cut(s)	283, 837, 845
StyI	CCWWGG	3 cut(s)	361, 458, 930
TaaI	ACNGT	1 cut(s)	476
TaiI	ACGT	2 cut(s)	340, 580
TaqI	TCGA	1 cut(s)	81
TasI	AATT	3 cut(s)	33, 276, 852
TatI	WGTACW	3 cut(s)	679, 818, 870
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	2 cut(s)	386, 708
Tru1I	TTAA	2 cut(s)	330, 945
Tru9I	TTAA	2 cut(s)	330, 945
TscAI	CASTG	4 cut(s)	408, 481, 916, 1003
TseFI	GTSAC	2 cut(s)	548, 797
Tsp45I	GTSAC	2 cut(s)	548, 797
TspDTI	ATGAA	2 cut(s)	378, 700
TspRI	CASTG	4 cut(s)	408, 481, 916, 1003
Van91I	CCANNNNNTGG	1 cut(s)	794
VpaK11BI	GGWCC	1 cut(s)	134
XceI	RCATGY	6 cut(s)	151, 317, 347, 533, 656, 805
XmiI	GTMKAC	2 cut(s)	574, 806
XspI	CTAG	1 cut(s)	453
ZrmI	AGTACT	2 cut(s)	820, 872
Zsp2I	ATGCAT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.