Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002717

Physical Location & Seq

Genomic Coordinates Reverse (-)

39662604 .. 39663563

Gene Structure 960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG349500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTCCATTAATAGTGTGCCCAAAAAGGTAATAGCACATCTTTTAAAGCCACATGGATGGAAGCCTCCTGTTCGCAGGCAATTTTTCTTGGATTGCAATGAAATAGCAGATCTTTGTGATAGTGCTGAATGGATATTCTCTAGTGAACCAAGTGTCTTACAACTTAGGGCTCCTATCAAGATATTTGGTGATTTACACTGGCAATTTGACGATCTCATGCGCCTTTTTGATGAGTATGGTTCACCTTCAACTGCTGGGAATATTGCGCAAGTGTCTTTATGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0016020 GO:0044424 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_2 Kelch_4 Metallophos

Protein Analysis

95

Amino Acids

10.8

Weight (kDa)

5.82

Isoelectric Point (pI)

52.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08420 AT1G08420 AT2G27210 AT2G27210
fragaria_vesca	FvH4_3g26300
malus_domestica	MD03G1156600.v1.1 MD03G1157300.v1.1 MD11G1174100.v1.1
prunus_persica	Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1
pyrus_communis	pycom03g11040 pycom11g14860
rosa_chinensis	RchiOBHm_Chr5g0048611 RchiOBHm_Chr7g0219991 RchiOBHm_Chr7g0220001
rosa_laevigata	RLG00000034543
rosa_multiflora	Rmu_co8183230.1_g000001 Rmu_co8284673.1_g000001 Rmu_sc0005838.1_g000012 Rmu_sc0005838.1_g000013 Rmu_sc0007553.1_g000001 Rmu_sc0008151.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033170 Rroxscaffold_3G00239830
rosa_rugosa	Rorug05G0240500 Rorug07G0188300
rosa_samantha	Rh5AG319700 Rh5CG355900 Rh7AG332100 Rh7CG349500 Rh7CG349600 Rh7DG327700 Rh7DG327800
rosa_wichuraiana	Rw0G021290 Rw5G029900 Rw7G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	249
AseI	ATTAAT	1 cut(s)	9
AspLEI	GCGC	2 cut(s)	222, 268
AsuHPI	GGTGA	2 cut(s)	200, 234
BaeGI	GKGCMC	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	172
BccI	CCATC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	141
BglII	AGATCT	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	171
Bse1I	ACTGG	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	62
BseMI	GCAATG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	21
BseYI	CCCAGC	1 cut(s)	254
Bsp1286I	GDGCHC	2 cut(s)	21, 172
Bsp143I	GATC	2 cut(s)	109, 211
BspLI	GGNNCC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	203
BssMI	GATC	2 cut(s)	109, 211
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	62
BstHHI	GCGC	2 cut(s)	222, 268
BstKTI	GATC	2 cut(s)	112, 214
BstMBI	GATC	2 cut(s)	109, 211
BstSLI	GKGCMC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	109
BstXI	CCANNNNNNTGG	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	77
CfoI	GCGC	2 cut(s)	222, 268
CviAII	CATG	2 cut(s)	53, 217
CviJI	RGCY	3 cut(s)	49, 64, 170
CviKI_1	RGCY	3 cut(s)	49, 64, 170
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	2 cut(s)	111, 213
DpnII	GATC	2 cut(s)	109, 211
DraI	TTTAAA	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	172
FaeI	CATG	2 cut(s)	56, 220
FaiI	YATR	5 cut(s)	54, 218, 237, 280, 286
FatI	CATG	2 cut(s)	52, 216
FokI	GGATG	1 cut(s)	69
FriOI	GRGCYC	1 cut(s)	172
FspBI	CTAG	1 cut(s)	141
FspI	TGCGCA	1 cut(s)	267
GlaI	GCGC	2 cut(s)	221, 267
GsaI	CCCAGC	1 cut(s)	258
HhaI	GCGC	2 cut(s)	222, 268
Hin1II	CATG	2 cut(s)	56, 220
Hin6I	GCGC	2 cut(s)	220, 266
HinP1I	GCGC	2 cut(s)	220, 266
HphI	GGTGA	2 cut(s)	200, 234
Hpy166II	GTNNAC	2 cut(s)	146, 242
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	2 cut(s)	146, 242
HpyAV	CCTTC	1 cut(s)	255
HpyCH4V	TGCA	1 cut(s)	96
HpyF3I	CTNAG	1 cut(s)	164
Hsp92II	CATG	2 cut(s)	56, 220
HspAI	GCGC	2 cut(s)	220, 266
Kzo9I	GATC	2 cut(s)	109, 211
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	4 cut(s)	61, 81, 184, 240
MaeI	CTAG	1 cut(s)	141
MalI	GATC	2 cut(s)	111, 213
MboI	GATC	2 cut(s)	109, 211
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	2 cut(s)	21, 172
MluCI	AATT	2 cut(s)	80, 203
MnlI	CCTC	1 cut(s)	75
MseI	TTAA	2 cut(s)	9, 44
MslI	CAYNNNNRTG	1 cut(s)	55
NdeII	GATC	2 cut(s)	109, 211
NlaIII	CATG	2 cut(s)	56, 220
NlaIV	GGNNCC	1 cut(s)	171
NsbI	TGCGCA	1 cut(s)	267
PshBI	ATTAAT	1 cut(s)	9
PspFI	CCCAGC	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	109
RseI	CAYNNNNRTG	1 cut(s)	55
SaqAI	TTAA	2 cut(s)	9, 44
Sau3AI	GATC	2 cut(s)	109, 211
SduI	GDGCHC	2 cut(s)	21, 172
SetI	ASST	2 cut(s)	30, 247
SmiMI	CAYNNNNRTG	1 cut(s)	55
Sse9I	AATT	2 cut(s)	80, 203
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	1 cut(s)	141
TasI	AATT	2 cut(s)	80, 203
Tru1I	TTAA	2 cut(s)	9, 44
Tru9I	TTAA	2 cut(s)	9, 44
TscAI	CASTG	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	203
VspI	ATTAAT	1 cut(s)	9
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.