Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002717

Physical Location & Seq

Genomic Coordinates Reverse (-)

38780663 .. 38782550

Gene Structure 1888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19691

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCCTGAAGCAGCACCTGATGGTGCTGTTGTGCTGGGAAATCCAGTTGCCCCACCTGTAAATGGAGACATTTATGCTGATATAAGCACTGAAAATGTCTTGCTCCAGGGATCTAGAAGACTGAGTAAAGGTGTAGAGTATTTAGTTGAAGCATCAGCAGCAGAAGCTGAGGCAATCAGCGCTACTTTGGCTGCTGCCAAGGCACGACAAGTACTTAATGGAGAAGTAGAGTTACCTGATAGAGATCGTGGCTCAGAGGCTACCCCAAGCGGGAAGCAAATATCTACCTTGATCAAGCCTGAAAATGCTGGGTCAAATAATATTCCGTCAGCTGGAGTGCGAGTGCATCATAGAGCTGTTGTTGTAGCTGCAGAGACTGGGGGAGCTTTGGGCGGCATGTTGAGGCAGCTTTCAATAGATCAGTTTGAAAATGAAGGCAGGCGGGTTAGCTATGGGACCCCGGAGTGTGCAACTGCAGCAAGGAAGTTATTAGATCGGCAGATGTCCATTAATAGTGTGCCCAAAAAGGTAATAGCACATCTTTTAAAGCCACAAGGATGGAAGCCTCCTGTTCGCAGGCAATTTTTCTTGGATTGCAATGAAATAGCAGATCTTTGTGATAGTGCTGAACGGATATTCTCTAGTGAACCAAGTGTCTTACAACTTAGGGCTCCCATCAAGATATTTGGTGATTTACACCGGCAATTTGACGATCTCATGCGCCTTTTTGATGAGTATGGTTCACCTTCAACTGCTGGGAATATTGCGCAAGTGTCTATGTTTATGATTCAAGAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0016020 GO:0044424 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_2 Kelch_4 Metallophos

Protein Analysis

266

Amino Acids

28.68

Weight (kDa)

5.5

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08420 AT1G08420 AT2G27210 AT2G27210
fragaria_vesca	FvH4_3g26300
malus_domestica	MD03G1156600.v1.1 MD03G1157300.v1.1 MD11G1174100.v1.1
prunus_persica	Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1
pyrus_communis	pycom03g11040 pycom11g14860
rosa_chinensis	RchiOBHm_Chr5g0048611 RchiOBHm_Chr7g0219991 RchiOBHm_Chr7g0220001
rosa_laevigata	RLG00000034543
rosa_multiflora	Rmu_co8183230.1_g000001 Rmu_co8284673.1_g000001 Rmu_sc0005838.1_g000012 Rmu_sc0005838.1_g000013 Rmu_sc0007553.1_g000001 Rmu_sc0008151.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033170 Rroxscaffold_3G00239830
rosa_rugosa	Rorug05G0240500 Rorug07G0188300
rosa_samantha	Rh5AG319700 Rh5CG355900 Rh7AG332100 Rh7CG349500 Rh7CG349600 Rh7DG327700 Rh7DG327800
rosa_wichuraiana	Rw0G021290 Rw5G029900 Rw7G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	768
AciI	CCGC	3 cut(s)	270, 393, 442
AclWI	GGATC	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	1 cut(s)	213
AfeI	AGCGCT	1 cut(s)	181
AfiI	CCNNNNNNNGG	3 cut(s)	62, 270, 332
AgsI	TTSAA	5 cut(s)	149, 414, 428, 750, 791
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	7 cut(s)	167, 332, 356, 368, 386, 409, 450
AluI	AGCT	7 cut(s)	167, 332, 356, 368, 386, 409, 450
Alw26I	GTCTC	2 cut(s)	60, 368
AlwI	GGATC	1 cut(s)	118
AlwNI	CAGNNNCTG	3 cut(s)	17, 167, 377
Aor51HI	AGCGCT	1 cut(s)	181
ApeKI	GCWGC	7 cut(s)	11, 158, 191, 194, 368, 406, 476
AseI	ATTAAT	1 cut(s)	510
AspLEI	GCGC	3 cut(s)	182, 723, 769
AspS9I	GGNCC	1 cut(s)	456
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	2 cut(s)	701, 735
AvaII	GGWCC	1 cut(s)	456
BaeGI	GKGCMC	1 cut(s)	522
BanII	GRGCYC	1 cut(s)	673
BarI	GAAGNNNNNNTAC	2 cut(s)	216, 248
BbsI	GAAGAC	1 cut(s)	124
BbvCI	CCTCAGC	1 cut(s)	168
BbvI	GCAGC	7 cut(s)	23, 170, 178, 181, 355, 418, 488
BccI	CCATC	3 cut(s)	14, 552, 683
BciT130I	CCWGG	1 cut(s)	107
BclI	TGATCA	1 cut(s)	291
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	2 cut(s)	60, 368
BfaI	CTAG	2 cut(s)	114, 642
BfmI	CTRYAG	2 cut(s)	369, 474
BfoI	RGCGCY	1 cut(s)	183
BglII	AGATCT	1 cut(s)	610
BisI	GCNGC	8 cut(s)	12, 159, 192, 195, 369, 394, 407, 477
BlsI	GCNGC	8 cut(s)	13, 160, 193, 196, 370, 395, 408, 478
BmcAI	AGTACT	1 cut(s)	213
Bme1390I	CCNGG	2 cut(s)	107, 461
Bme18I	GGWCC	1 cut(s)	456
BmgT120I	GGNCC	1 cut(s)	456
BmiI	GGNNCC	3 cut(s)	457, 458, 672
BmrFI	CCNGG	2 cut(s)	107, 461
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	2 cut(s)	161, 355
BmuI	ACTGGG	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	124
BpmI	CTGGAG	2 cut(s)	89, 354
Bpu10I	CCTNAGC	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	243
BsaJI	CCNNGG	3 cut(s)	106, 198, 459
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 270, 332
Bse118I	RCCGGY	1 cut(s)	699
Bse1I	ACTGG	2 cut(s)	44, 382
Bse3DI	GCAATG	1 cut(s)	604
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	3 cut(s)	106, 198, 459
BseGI	GGATG	1 cut(s)	563
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	3 cut(s)	62, 270, 332
BseMI	GCAATG	1 cut(s)	604
BseMII	CTCAG	3 cut(s)	113, 159, 267
BseNI	ACTGG	2 cut(s)	44, 382
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	7 cut(s)	23, 170, 178, 181, 355, 418, 488
BseYI	CCCAGC	3 cut(s)	34, 308, 755
BsiSI	CCGG	2 cut(s)	461, 700
BslFI	GGGAC	1 cut(s)	469
BslI	CCNNNNNNNGG	3 cut(s)	62, 270, 332
BsmAI	GTCTC	2 cut(s)	60, 368
BsmFI	GGGAC	1 cut(s)	469
Bsp1286I	GDGCHC	2 cut(s)	522, 673
Bsp143I	GATC	7 cut(s)	110, 244, 291, 418, 493, 610, 712
BspACI	CCGC	3 cut(s)	270, 393, 442
BspCNI	CTCAG	3 cut(s)	114, 160, 266
BspLI	GGNNCC	3 cut(s)	457, 458, 672
BspMAI	CTGCAG	2 cut(s)	373, 478
BspPI	GGATC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	604
BsrFI	RCCGGY	1 cut(s)	699
BsrI	ACTGG	2 cut(s)	44, 382
BssAI	RCCGGY	1 cut(s)	699
BssECI	CCNNGG	3 cut(s)	106, 198, 459
BssMI	GATC	7 cut(s)	110, 244, 291, 418, 493, 610, 712
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	440, 578
BstDEI	CTNAG	4 cut(s)	122, 168, 253, 665
BstF5I	GGATG	1 cut(s)	563
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	3 cut(s)	182, 723, 769
BstKTI	GATC	7 cut(s)	113, 247, 294, 421, 496, 613, 715
BstMAI	GTCTC	2 cut(s)	60, 368
BstMBI	GATC	7 cut(s)	110, 244, 291, 418, 493, 610, 712
BstMWI	GCNNNNNNNGC	6 cut(s)	158, 164, 179, 188, 200, 476
BstNI	CCWGG	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	2 cut(s)	105, 459
BstSFI	CTRYAG	2 cut(s)	369, 474
BstSLI	GKGCMC	1 cut(s)	522
BstV1I	GCAGC	7 cut(s)	23, 170, 178, 181, 355, 418, 488
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	2 cut(s)	110, 610
BstXI	CCANNNNNNTGG	1 cut(s)	558
BstYI	RGATCY	2 cut(s)	110, 610
BtsCI	GGATG	1 cut(s)	563
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	2 cut(s)	440, 578
CaiI	CAGNNNCTG	3 cut(s)	17, 167, 377
CfoI	GCGC	3 cut(s)	182, 723, 769
Cfr10I	RCCGGY	1 cut(s)	699
Cfr13I	GGNCC	1 cut(s)	456
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	2 cut(s)	397, 718
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	4 cut(s)	122, 168, 253, 665
DpnI	GATC	7 cut(s)	112, 246, 293, 420, 495, 612, 714
DpnII	GATC	7 cut(s)	110, 244, 291, 418, 493, 610, 712
DraI	TTTAAA	1 cut(s)	546
Eco130I	CCWWGG	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	673
Eco47I	GGWCC	1 cut(s)	456
Eco47III	AGCGCT	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	456
EcoRII	CCWGG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	673
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	2 cut(s)	400, 721
FaiI	YATR	9 cut(s)	75, 83, 351, 398, 453, 719, 738, 779, 785
FaqI	GGGAC	1 cut(s)	469
FatI	CATG	2 cut(s)	396, 717
FauI	CCCGC	2 cut(s)	263, 435
FbaI	TGATCA	1 cut(s)	291
Fnu4HI	GCNGC	8 cut(s)	12, 159, 192, 195, 369, 394, 407, 477
FokI	GGATG	1 cut(s)	570
FriOI	GRGCYC	1 cut(s)	673
Fsp4HI	GCNGC	8 cut(s)	12, 159, 192, 195, 369, 394, 407, 477
FspBI	CTAG	2 cut(s)	114, 642
FspI	TGCGCA	1 cut(s)	768
GlaI	GCGC	3 cut(s)	181, 722, 768
GluI	GCNGC	8 cut(s)	12, 159, 192, 195, 369, 394, 407, 477
GsaI	CCCAGC	3 cut(s)	38, 312, 759
GsuI	CTGGAG	2 cut(s)	89, 354
HaeII	RGCGCY	1 cut(s)	183
HapII	CCGG	2 cut(s)	461, 700
HhaI	GCGC	3 cut(s)	182, 723, 769
Hin1II	CATG	2 cut(s)	400, 721
Hin6I	GCGC	3 cut(s)	180, 721, 767
HinP1I	GCGC	3 cut(s)	180, 721, 767
HinfI	GANTC	1 cut(s)	787
HpaII	CCGG	2 cut(s)	461, 700
HphI	GGTGA	2 cut(s)	701, 735
Hpy166II	GTNNAC	2 cut(s)	647, 743
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	3 cut(s)	114, 679, 791
Hpy8I	GTNNAC	2 cut(s)	647, 743
HpyAV	CCTTC	2 cut(s)	428, 756
HpyCH4V	TGCA	5 cut(s)	346, 371, 470, 476, 597
HpyF10VI	GCNNNNNNNGC	6 cut(s)	158, 164, 179, 188, 200, 476
HpyF3I	CTNAG	4 cut(s)	122, 168, 253, 665
Hsp92II	CATG	2 cut(s)	400, 721
HspAI	GCGC	3 cut(s)	180, 721, 767
KflI	GGGWCCC	1 cut(s)	456
Ksp22I	TGATCA	1 cut(s)	291
Kzo9I	GATC	7 cut(s)	110, 244, 291, 418, 493, 610, 712
LmnI	GCTCC	3 cut(s)	108, 383, 676
Lsp1109I	GCAGC	7 cut(s)	23, 170, 178, 181, 355, 418, 488
LweI	GCATC	2 cut(s)	161, 355
MaeI	CTAG	2 cut(s)	114, 642
MaeIII	GTNAC	1 cut(s)	231
MalI	GATC	7 cut(s)	112, 246, 293, 420, 495, 612, 714
MboI	GATC	7 cut(s)	110, 244, 291, 418, 493, 610, 712
MboII	GAAGA	1 cut(s)	129
MflI	RGATCY	2 cut(s)	110, 610
MhlI	GDGCHC	2 cut(s)	522, 673
MluCI	AATT	2 cut(s)	581, 704
MnlI	CCTC	4 cut(s)	163, 250, 396, 576
MseI	TTAA	3 cut(s)	216, 510, 545
MslI	CAYNNNNRTG	1 cut(s)	556
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	2 cut(s)	461, 700
MspR9I	CCNGG	2 cut(s)	107, 461
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	6 cut(s)	158, 164, 179, 188, 200, 476
NciI	CCSGG	1 cut(s)	461
NdeII	GATC	7 cut(s)	110, 244, 291, 418, 493, 610, 712
NlaIII	CATG	2 cut(s)	400, 721
NlaIV	GGNNCC	3 cut(s)	457, 458, 672
NsbI	TGCGCA	1 cut(s)	768
NspI	RCATGY	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	787
PkrI	GCNGC	8 cut(s)	13, 160, 193, 196, 370, 395, 408, 478
PpuMI	RGGWCCY	1 cut(s)	456
PshBI	ATTAAT	1 cut(s)	510
Psp5II	RGGWCCY	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	105
PspFI	CCCAGC	3 cut(s)	34, 308, 755
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	3 cut(s)	457, 458, 672
PspPI	GGNCC	1 cut(s)	456
PspPPI	RGGWCCY	1 cut(s)	456
PstI	CTGCAG	2 cut(s)	373, 478
PstNI	CAGNNNCTG	3 cut(s)	17, 167, 377
PsuI	RGATCY	2 cut(s)	110, 610
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	556
SaqAI	TTAA	3 cut(s)	216, 510, 545
SatI	GCNGC	8 cut(s)	12, 159, 192, 195, 369, 394, 407, 477
Sau3AI	GATC	7 cut(s)	110, 244, 291, 418, 493, 610, 712
Sau96I	GGNCC	1 cut(s)	456
ScaI	AGTACT	1 cut(s)	213
ScrFI	CCNGG	2 cut(s)	107, 461
SduI	GDGCHC	2 cut(s)	522, 673
SfaNI	GCATC	2 cut(s)	161, 355
SfcI	CTRYAG	2 cut(s)	369, 474
SinI	GGWCC	1 cut(s)	456
SmiMI	CAYNNNNRTG	1 cut(s)	556
Sse9I	AATT	2 cut(s)	581, 704
SsiI	CCGC	3 cut(s)	270, 393, 442
SspI	AATATT	2 cut(s)	322, 763
SspMI	CTAG	2 cut(s)	114, 642
StyD4I	CCNGG	2 cut(s)	105, 459
StyI	CCWWGG	1 cut(s)	198
TasI	AATT	2 cut(s)	581, 704
TatI	WGTACW	1 cut(s)	211
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	787
Tru1I	TTAA	3 cut(s)	216, 510, 545
Tru9I	TTAA	3 cut(s)	216, 510, 545
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	7 cut(s)	11, 158, 191, 194, 368, 406, 476
TspDTI	ATGAA	2 cut(s)	447, 615
TspGWI	ACGGA	2 cut(s)	315, 646
TspRI	CASTG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	456
VspI	ATTAAT	1 cut(s)	510
XbaI	TCTAGA	1 cut(s)	113
XceI	RCATGY	1 cut(s)	400
XspI	CTAG	2 cut(s)	114, 642
ZrmI	AGTACT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.