Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002717

Physical Location & Seq

Genomic Coordinates Reverse (-)

39663647 .. 39673275

Gene Structure 9629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG349600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGACCAGGTATGCAAGTGCAAGTGCAAGGTCGGATGGTCTTCTCCTCCTTTGTAGAGGGAGGGATGCAAACAGTGTGCCATTGGCAAGTGCATATGGCCTTGCCAAACATAGGGATGGCCGTTGGGAATGGGCAATTGCTCCTGGCGTCTCCCCTTCTCCCAGATATCAACATGCAGCAGTTTTTGTTAATGCACGCTTGCATGTTTCTGGAGGGGCCCTTGGTGGTGGGCGCATGGTTGAAGATTCATCAAGTGTTGCAGTGTTGGATACTGCAGCCGGGGTTTGGTGCGATACAAAATCTGTTGTCACGAGTCCAAGGACAGGTAGATACAGCGCTGATGCAGCTGGTGGAGATGCTGCAGTTGAATTGACACGGCGTTGCAGGCATGCAGCTGCTGCGGTTTGTGACCTGATATTTATATACAGTGGTCTACGTGGTGGGGTGTTGCTTGATGAGCTACTCGTTGCGGAAGATCTGGCTGCTGCAGAAACAACAACTGCAGCCTCGCATGCTGCAGCTGCAGCTGCTCAGTCTAATTTACCACCAGGCCGTTTGCCTGGAAGATATGGATTCATTGATGAAAGAACGAGGCAGATAATGCCTGAAGCAGCACCTGATGGTGCTTTTGGATCCAGAAGACTGAGTAAAGAGGCTACCCCAAGCGGGAAGCAAATATCTACCTTGATCAAGCCTGAAAATGCTGGGTCAAATAATATTCCGTCAGCTGGAGTGCGAGTGCATCATAGAGCTGTTGTTGTAGCTGCAGAGACTGGGGGAGCTTTGGGTGGCATGTTGAGGCAGCTTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0016020 GO:0044424 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_2 Kelch_4 Metallophos

Protein Analysis

270

Amino Acids

27.98

Weight (kDa)

9.2

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_2	PF07646	54 - 101	9.9e-08	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08420 AT1G08420 AT2G27210 AT2G27210
fragaria_vesca	FvH4_3g26300
malus_domestica	MD03G1156600.v1.1 MD03G1157300.v1.1 MD11G1174100.v1.1
prunus_persica	Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1 Prupe.6G145800_v2.0.a1
pyrus_communis	pycom03g11040 pycom11g14860
rosa_chinensis	RchiOBHm_Chr5g0048611 RchiOBHm_Chr7g0219991 RchiOBHm_Chr7g0220001
rosa_laevigata	RLG00000034543
rosa_multiflora	Rmu_co8183230.1_g000001 Rmu_co8284673.1_g000001 Rmu_sc0005838.1_g000012 Rmu_sc0005838.1_g000013 Rmu_sc0007553.1_g000001 Rmu_sc0008151.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033170 Rroxscaffold_3G00239830
rosa_rugosa	Rorug05G0240500 Rorug07G0188300
rosa_samantha	Rh5AG319700 Rh5CG355900 Rh7AG332100 Rh7CG349500 Rh7CG349600 Rh7DG327700 Rh7DG327800
rosa_wichuraiana	Rw0G021290 Rw5G029900 Rw7G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	433
AciI	CCGC	3 cut(s)	401, 470, 666
AclWI	GGATC	2 cut(s)	627, 640
AcoI	YGGCCR	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	627
AcyI	GRCGYC	1 cut(s)	147
AfeI	AGCGCT	1 cut(s)	337
AfiI	CCNNNNNNNGG	5 cut(s)	111, 285, 323, 666, 728
AgsI	TTSAA	3 cut(s)	242, 368, 809
AjnI	CCWGG	4 cut(s)	5, 142, 547, 559
Alw26I	GTCTC	2 cut(s)	154, 764
AlwI	GGATC	2 cut(s)	627, 640
AlwNI	CAGNNNCTG	3 cut(s)	398, 617, 773
Aor51HI	AGCGCT	1 cut(s)	337
AoxI	GGCC	4 cut(s)	97, 118, 216, 550
ApaI	GGGCCC	1 cut(s)	220
AspLEI	GCGC	2 cut(s)	234, 338
AspS9I	GGNCC	2 cut(s)	216, 217
AsuC2I	CCSGG	1 cut(s)	280
BaeGI	GKGCMC	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	632
BanII	GRGCYC	1 cut(s)	220
BauI	CACGAG	1 cut(s)	310
BbsI	GAAGAC	2 cut(s)	32, 646
BccI	CCATC	3 cut(s)	29, 110, 614
BceAI	ACGGC	3 cut(s)	105, 392, 537
BciT130I	CCWGG	4 cut(s)	7, 144, 549, 561
BciVI	GTATCC	1 cut(s)	262
BclI	TGATCA	1 cut(s)	687
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	2 cut(s)	154, 764
BfmI	CTRYAG	7 cut(s)	273, 360, 486, 501, 516, 522, 765
BfoI	RGCGCY	1 cut(s)	339
BfuI	GTATCC	1 cut(s)	262
BglII	AGATCT	1 cut(s)	475
Bme1390I	CCNGG	5 cut(s)	7, 144, 280, 549, 561
BmgT120I	GGNCC	2 cut(s)	216, 217
BmiI	GGNNCC	3 cut(s)	217, 218, 634
BmrFI	CCNGG	5 cut(s)	7, 144, 280, 549, 561
BmrI	ACTGGG	1 cut(s)	783
BmsI	GCATC	4 cut(s)	55, 331, 346, 751
BmuI	ACTGGG	1 cut(s)	783
BpiI	GAAGAC	2 cut(s)	32, 646
BpmI	CTGGAG	2 cut(s)	231, 750
BpuMI	CCSGG	1 cut(s)	280
BsaAI	YACGTR	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	3 cut(s)	220, 279, 317
BsaXI	ACNNNNNCTCC	2 cut(s)	723, 753
Bsc4I	CCNNNNNNNGG	5 cut(s)	111, 285, 323, 666, 728
Bse1I	ACTGG	1 cut(s)	778
BseBI	CCWGG	4 cut(s)	7, 144, 549, 561
BseDI	CCNNGG	3 cut(s)	220, 279, 317
BseGI	GGATG	3 cut(s)	40, 70, 121
BseLI	CCNNNNNNNGG	5 cut(s)	111, 285, 323, 666, 728
BseMII	CTCAG	2 cut(s)	545, 635
BseNI	ACTGG	1 cut(s)	778
BseRI	GAGGAG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	220
BseYI	CCCAGC	1 cut(s)	704
BshFI	GGCC	4 cut(s)	99, 120, 218, 552
BsiSI	CCGG	1 cut(s)	279
BslI	CCNNNNNNNGG	5 cut(s)	111, 285, 323, 666, 728
BsmAI	GTCTC	2 cut(s)	154, 764
BsmBI	CGTCTC	1 cut(s)	154
BsnI	GGCC	4 cut(s)	99, 120, 218, 552
Bsp120I	GGGCCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	3 cut(s)	475, 632, 687
BspACI	CCGC	3 cut(s)	401, 470, 666
BspANI	GGCC	4 cut(s)	99, 120, 218, 552
BspCNI	CTCAG	2 cut(s)	544, 636
BspLI	GGNNCC	3 cut(s)	217, 218, 634
BspMAI	CTGCAG	7 cut(s)	277, 364, 490, 505, 520, 526, 769
BspPI	GGATC	2 cut(s)	627, 640
BsrI	ACTGG	1 cut(s)	778
BssECI	CCNNGG	3 cut(s)	220, 279, 317
BssMI	GATC	3 cut(s)	475, 632, 687
BssNI	GRCGYC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	310
BssT1I	CCWWGG	2 cut(s)	220, 317
Bst2BI	CACGAG	1 cut(s)	310
Bst2UI	CCWGG	4 cut(s)	7, 144, 549, 561
Bst4CI	ACNGT	2 cut(s)	74, 428
BstACI	GRCGYC	1 cut(s)	147
BstAPI	GCANNNNNTGC	2 cut(s)	398, 601
BstBAI	YACGTR	1 cut(s)	437
BstC8I	GCNNGC	5 cut(s)	196, 200, 386, 390, 513
BstDEI	CTNAG	2 cut(s)	531, 644
BstF5I	GGATG	3 cut(s)	40, 70, 121
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	2 cut(s)	234, 338
BstKTI	GATC	3 cut(s)	478, 635, 690
BstMAI	GTCTC	2 cut(s)	154, 764
BstMBI	GATC	3 cut(s)	475, 632, 687
BstMWI	GCNNNNNNNGC	9 cut(s)	344, 385, 398, 457, 512, 521, 524, 527, 601
BstNI	CCWGG	4 cut(s)	7, 144, 549, 561
BstNSI	RCATGY	5 cut(s)	176, 206, 392, 515, 796
BstSCI	CCNGG	5 cut(s)	5, 142, 278, 547, 559
BstSFI	CTRYAG	7 cut(s)	273, 360, 486, 501, 516, 522, 765
BstSLI	GKGCMC	1 cut(s)	220
BstV2I	GAAGAC	2 cut(s)	32, 646
BstX2I	RGATCY	2 cut(s)	475, 632
BstYI	RGATCY	2 cut(s)	475, 632
BsuI	GTATCC	1 cut(s)	262
BsuRI	GGCC	4 cut(s)	99, 120, 218, 552
BtsCI	GGATG	3 cut(s)	40, 70, 121
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	3 cut(s)	79, 267, 433
Cac8I	GCNNGC	5 cut(s)	196, 200, 386, 390, 513
CaiI	CAGNNNCTG	3 cut(s)	398, 617, 773
CfoI	GCGC	2 cut(s)	234, 338
Cfr13I	GGNCC	2 cut(s)	216, 217
CseI	GACGC	1 cut(s)	136
CsiI	ACCWGGT	1 cut(s)	5
CviAII	CATG	6 cut(s)	173, 203, 235, 389, 512, 793
DdeI	CTNAG	2 cut(s)	531, 644
DpnI	GATC	3 cut(s)	477, 634, 689
DpnII	GATC	3 cut(s)	475, 632, 687
EaeI	YGGCCR	1 cut(s)	118
Eco130I	CCWWGG	2 cut(s)	220, 317
Eco24I	GRGCYC	1 cut(s)	220
Eco32I	GATATC	1 cut(s)	167
Eco47III	AGCGCT	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	627
EcoO109I	RGGNCCY	2 cut(s)	216, 217
EcoRII	CCWGG	4 cut(s)	5, 142, 547, 559
EcoRV	GATATC	1 cut(s)	167
EcoT14I	CCWWGG	2 cut(s)	220, 317
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	2 cut(s)	220, 317
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	6 cut(s)	176, 206, 238, 392, 515, 796
FatI	CATG	6 cut(s)	172, 202, 234, 388, 511, 792
FauI	CCCGC	1 cut(s)	659
FauNDI	CATATG	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	687
FblI	GTMKAC	1 cut(s)	433
FokI	GGATG	3 cut(s)	47, 77, 128
FriOI	GRGCYC	1 cut(s)	220
GlaI	GCGC	2 cut(s)	233, 337
GsaI	CCCAGC	1 cut(s)	708
GsuI	CTGGAG	2 cut(s)	231, 750
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	4 cut(s)	99, 120, 218, 552
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	2 cut(s)	234, 338
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	6 cut(s)	176, 206, 238, 392, 515, 796
Hin6I	GCGC	2 cut(s)	232, 336
HinP1I	GCGC	2 cut(s)	232, 336
HinfI	GANTC	3 cut(s)	245, 313, 573
HpaII	CCGG	1 cut(s)	279
Hpy166II	GTNNAC	1 cut(s)	434
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	3 cut(s)	210, 310, 636
Hpy8I	GTNNAC	1 cut(s)	434
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	2 cut(s)	74, 428
HpyCH4IV	ACGT	1 cut(s)	436
HpyF10VI	GCNNNNNNNGC	9 cut(s)	344, 385, 398, 457, 512, 521, 524, 527, 601
HpyF3I	CTNAG	2 cut(s)	531, 644
HpySE526I	ACGT	1 cut(s)	436
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	6 cut(s)	176, 206, 238, 392, 515, 796
HspAI	GCGC	2 cut(s)	232, 336
Ksp22I	TGATCA	1 cut(s)	687
Kzo9I	GATC	3 cut(s)	475, 632, 687
LmnI	GCTCC	2 cut(s)	145, 779
LweI	GCATC	4 cut(s)	55, 331, 346, 751
MabI	ACCWGGT	1 cut(s)	5
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	2 cut(s)	307, 407
MalI	GATC	3 cut(s)	477, 634, 689
MboI	GATC	3 cut(s)	475, 632, 687
MboII	GAAGA	5 cut(s)	32, 254, 485, 576, 651
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	2 cut(s)	475, 632
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	3 cut(s)	135, 368, 538
MlyI	GAGTC	1 cut(s)	322
MmeI	TCCRAC	2 cut(s)	12, 246
MnlI	CCTC	8 cut(s)	50, 54, 56, 206, 517, 585, 646, 792
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	114
MspA1I	CMGCKG	5 cut(s)	347, 395, 521, 527, 728
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	5 cut(s)	7, 144, 280, 549, 561
MunI	CAATTG	1 cut(s)	135
MvaI	CCWGG	4 cut(s)	7, 144, 549, 561
MwoI	GCNNNNNNNGC	9 cut(s)	344, 385, 398, 457, 512, 521, 524, 527, 601
NciI	CCSGG	1 cut(s)	280
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	3 cut(s)	475, 632, 687
NlaIII	CATG	6 cut(s)	176, 206, 238, 392, 515, 796
NlaIV	GGNNCC	3 cut(s)	217, 218, 634
NmuCI	GTSAC	2 cut(s)	307, 407
NspI	RCATGY	5 cut(s)	176, 206, 392, 515, 796
PaeI	GCATGC	2 cut(s)	392, 515
PfeI	GAWTC	2 cut(s)	245, 573
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
Ppu21I	YACGTR	1 cut(s)	437
Psp6I	CCWGG	4 cut(s)	5, 142, 547, 559
PspFI	CCCAGC	1 cut(s)	704
PspGI	CCWGG	4 cut(s)	5, 142, 547, 559
PspN4I	GGNNCC	3 cut(s)	217, 218, 634
PspOMI	GGGCCC	1 cut(s)	216
PspPI	GGNCC	2 cut(s)	216, 217
PstI	CTGCAG	7 cut(s)	277, 364, 490, 505, 520, 526, 769
PstNI	CAGNNNCTG	3 cut(s)	398, 617, 773
PsuI	RGATCY	2 cut(s)	475, 632
PvuII	CAGCTG	5 cut(s)	347, 395, 521, 527, 728
RseI	CAYNNNNRTG	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	189
Sau3AI	GATC	3 cut(s)	475, 632, 687
Sau96I	GGNCC	2 cut(s)	216, 217
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	5 cut(s)	7, 144, 280, 549, 561
SduI	GDGCHC	1 cut(s)	220
SexAI	ACCWGGT	1 cut(s)	5
SfaNI	GCATC	4 cut(s)	55, 331, 346, 751
SfcI	CTRYAG	7 cut(s)	273, 360, 486, 501, 516, 522, 765
SmiMI	CAYNNNNRTG	1 cut(s)	114
SphI	GCATGC	2 cut(s)	392, 515
Sse9I	AATT	3 cut(s)	135, 368, 538
SsiI	CCGC	3 cut(s)	401, 470, 666
SspI	AATATT	1 cut(s)	718
StyD4I	CCNGG	5 cut(s)	5, 142, 278, 547, 559
StyI	CCWWGG	2 cut(s)	220, 317
TaaI	ACNGT	2 cut(s)	74, 428
TaiI	ACGT	1 cut(s)	439
TasI	AATT	3 cut(s)	135, 368, 538
TfiI	GAWTC	2 cut(s)	245, 573
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	3 cut(s)	79, 267, 433
TseFI	GTSAC	2 cut(s)	307, 407
Tsp45I	GTSAC	2 cut(s)	307, 407
TspDTI	ATGAA	3 cut(s)	237, 565, 597
TspGWI	ACGGA	1 cut(s)	711
TspRI	CASTG	3 cut(s)	79, 267, 433
XceI	RCATGY	5 cut(s)	176, 206, 392, 515, 796
XmiI	GTMKAC	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.