MD03G1278200.v1.1

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0002523
Physical Location & Seq
Forward (+)
36024443 .. 36026781
2339 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1278200.v1.1.491

Sequence Viewer

Length: 930 bp
ATGTCAGACAAAGCTTCTGAGAATACACAGGAAACTCGTGACGAAATGCTTTCTAGGCACAGGAAAGAGATATCAAAACTTCAGGACAAGGAAACTGAAATGAAAAAGGCAGCTGCCAAAGGGAGCAAGGCTGAACAAAAAGCTAAGAAAAAGCAGGTGGAGGAAGAGATTACTCGGCTTTCTGCTAATCTTAAAGAAAAACATGCTGCAGAACTTGCTTCGTTAGGCTATAGTGCTAGTAATGGGAATGAGAAAAGTAAACTTGACACTTTAGTGAAGGCCATAGCTGGTGTTTCTGTCACCAGTCAACCTGAGCAGGCAAAGCCCAGCAAGAGTTCGAAGAGGCGAGAGAAGAGGGCTCAGCAAGATGCAGCCAGGGAGCAAAGAATTCAAGAAGAGCAGAGCAACCGAGTAAGTGATCGAATGATTGAGGATGAAAAACTAGAGAAAAAGCTCGAACCCTTTGGCTTGACCATTAATGAAATAAAGCCTGATGGCCATTGCCTCTACCGAGCTATCCAGGATCAACTGGCCCACCTTTCGGGAGGTTCATCACCTTACACGTACCAACAGCTTCGAGAAATGGTAGCTGCTTATATGAGGAAGCATGCATCTGATTTTCTCCCTTTTTTCTTGTCGGAGAATCCAGCAGATGGAGATTCTGACGAGTCACTTGCAGAGAGGTTCGAGAACTACTGTAAAGAAGTGGAGTCAACTGCAGCATGGGGAGGACAGCTAGAGCTTGGTGCTTTAACTCACTGCCTTAAAAAGCCTATCAAGATATACTCAGGATCCTTCCCTGATGTGGAGATGGGGAAGGAGTACAAATCCGATAGCGGAACAGGTTCTTCCGATTCGAGTATTATGTTGTCATACCATAAGCATGCATTTGGGCTTGGTGAGCACTATAATTCCGTGGTTCGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

310

Amino Acids

34.63

Weight (kDa)

6.78

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 163 - 303 3.6e-35 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 145
Acc36I ACCTGC 1 cut(s) 145
AccB7I CCANNNNNTGG 1 cut(s) 653
AciI CCGC 1 cut(s) 837
AclWI GGATC 3 cut(s) 531, 786, 799
AcoI YGGCCR 1 cut(s) 496
AcsI RAATTY 1 cut(s) 387
AcuI CTGAAG 1 cut(s) 65
AfaI GTAC 2 cut(s) 566, 824
AfiI CCNNNNNNNGG 3 cut(s) 541, 653, 805
AflIII ACRYGT 1 cut(s) 561
AgsI TTSAA 1 cut(s) 392
AjnI CCWGG 2 cut(s) 374, 519
AleI CACNNNNGTG 1 cut(s) 272
Alw21I GWGCWC 1 cut(s) 906
AlwI GGATC 3 cut(s) 531, 786, 799
AoxI GGCC 3 cut(s) 279, 496, 531
ApeKI GCWGC 6 cut(s) 110, 113, 206, 371, 590, 719
ApoI RAATTY 1 cut(s) 387
AseI ATTAAT 1 cut(s) 477
Asp700I GAANNNNTTC 1 cut(s) 844
AspS9I GGNCC 1 cut(s) 532
AsuHPI GGTGA 3 cut(s) 292, 546, 911
AsuII TTCGAA 2 cut(s) 338, 922
BalI TGGCCA 1 cut(s) 498
BamHI GGATCC 1 cut(s) 791
BanII GRGCYC 1 cut(s) 361
BauI CACGAG 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 906
BbvI GCAGC 6 cut(s) 100, 122, 193, 383, 577, 731
BccI CCATC 3 cut(s) 488, 647, 805
BcgI CGANNNNNNTGC 2 cut(s) 656, 690
BciT130I CCWGG 2 cut(s) 376, 521
BfaI CTAG 4 cut(s) 54, 237, 443, 737
BfmI CTRYAG 3 cut(s) 207, 229, 717
BfuAI ACCTGC 1 cut(s) 145
BisI GCNGC 6 cut(s) 111, 114, 207, 372, 591, 720
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 6 cut(s) 112, 115, 208, 373, 592, 721
Bme1390I CCNGG 2 cut(s) 376, 521
BmgT120I GGNCC 1 cut(s) 532
BmiI GGNNCC 1 cut(s) 793
BmrFI CCNGG 2 cut(s) 376, 521
BmsI GCATC 2 cut(s) 358, 620
Bpu10I CCTNAGC 1 cut(s) 312
Bpu1102I GCTNAGC 1 cut(s) 360
Bpu14I TTCGAA 2 cut(s) 338, 922
BsaAI YACGTR 1 cut(s) 564
BsaJI CCNNGG 2 cut(s) 375, 915
Bsc4I CCNNNNNNNGG 3 cut(s) 541, 653, 805
Bse1I ACTGG 2 cut(s) 303, 534
Bse3DI GCAATG 1 cut(s) 499
BseBI CCWGG 2 cut(s) 376, 521
BseDI CCNNGG 2 cut(s) 375, 915
BseGI GGATG 1 cut(s) 439
BseLI CCNNNNNNNGG 3 cut(s) 541, 653, 805
BseMI GCAATG 1 cut(s) 499
BseMII CTCAG 4 cut(s) 9, 303, 374, 801
BseNI ACTGG 2 cut(s) 303, 534
BseXI GCAGC 6 cut(s) 100, 122, 193, 383, 577, 731
BseYI CCCAGC 1 cut(s) 326
BshFI GGCC 3 cut(s) 281, 498, 533
BsiHKAI GWGCWC 1 cut(s) 906
BslI CCNNNNNNNGG 3 cut(s) 541, 653, 805
BsnI GGCC 3 cut(s) 281, 498, 533
Bsp119I TTCGAA 2 cut(s) 338, 922
Bsp1286I GDGCHC 2 cut(s) 361, 906
Bsp143I GATC 3 cut(s) 418, 523, 791
Bsp1720I GCTNAGC 1 cut(s) 360
BspACI CCGC 1 cut(s) 837
BspANI GGCC 3 cut(s) 281, 498, 533
BspCNI CTCAG 4 cut(s) 10, 304, 373, 800
BspLI GGNNCC 1 cut(s) 793
BspMAI CTGCAG 2 cut(s) 211, 721
BspMI ACCTGC 1 cut(s) 145
BspPI GGATC 3 cut(s) 531, 786, 799
BspQI GCTCTTC 1 cut(s) 390
BspT104I TTCGAA 2 cut(s) 338, 922
BsrDI GCAATG 1 cut(s) 499
BsrI ACTGG 2 cut(s) 303, 534
BssECI CCNNGG 2 cut(s) 375, 915
BssMI GATC 3 cut(s) 418, 523, 791
BssSI CACGAG 1 cut(s) 36
Bst2BI CACGAG 1 cut(s) 36
Bst2UI CCWGG 2 cut(s) 376, 521
Bst4CI ACNGT 1 cut(s) 698
Bst6I CTCTTC 4 cut(s) 159, 335, 347, 390
BstAPI GCANNNNNTGC 1 cut(s) 215
BstBAI YACGTR 1 cut(s) 564
BstBI TTCGAA 2 cut(s) 338, 922
BstC8I GCNNGC 3 cut(s) 318, 609, 885
BstDEI CTNAG 5 cut(s) 18, 144, 312, 360, 787
BstDSI CCRYGG 1 cut(s) 915
BstF5I GGATG 1 cut(s) 439
BstKTI GATC 3 cut(s) 421, 526, 794
BstMBI GATC 3 cut(s) 418, 523, 791
BstMWI GCNNNNNNNGC 4 cut(s) 55, 215, 322, 901
BstNI CCWGG 2 cut(s) 376, 521
BstNSI RCATGY 3 cut(s) 206, 611, 887
BstSCI CCNGG 2 cut(s) 374, 519
BstSFI CTRYAG 3 cut(s) 207, 229, 717
BstV1I GCAGC 6 cut(s) 100, 122, 193, 383, 577, 731
BstX2I RGATCY 1 cut(s) 791
BstYI RGATCY 1 cut(s) 791
BsuRI GGCC 3 cut(s) 281, 498, 533
BtgI CCRYGG 1 cut(s) 915
BtsCI GGATG 1 cut(s) 439
BtsI GCAGTG 1 cut(s) 757
BtsIMutI CAGTG 1 cut(s) 757
BveI ACCTGC 1 cut(s) 145
Cac8I GCNNGC 3 cut(s) 318, 609, 885
Cfr13I GGNCC 1 cut(s) 532
Csp6I GTAC 2 cut(s) 565, 823
CviAII CATG 4 cut(s) 203, 608, 723, 884
CviQI GTAC 2 cut(s) 565, 823
DdeI CTNAG 5 cut(s) 18, 144, 312, 360, 787
DpnI GATC 3 cut(s) 420, 525, 793
DpnII GATC 3 cut(s) 418, 523, 791
EaeI YGGCCR 1 cut(s) 496
Eam1104I CTCTTC 4 cut(s) 159, 335, 347, 390
EarI CTCTTC 4 cut(s) 159, 335, 347, 390
Eco24I GRGCYC 1 cut(s) 361
Eco32I GATATC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 65
EcoRI GAATTC 1 cut(s) 387
EcoRII CCWGG 2 cut(s) 374, 519
EcoRV GATATC 1 cut(s) 72
EcoT22I ATGCAT 2 cut(s) 613, 889
EcoT38I GRGCYC 1 cut(s) 361
FaeI CATG 4 cut(s) 206, 611, 726, 887
FatI CATG 4 cut(s) 202, 607, 722, 883
Fnu4HI GCNGC 6 cut(s) 111, 114, 207, 372, 591, 720
FokI GGATG 1 cut(s) 446
FriOI GRGCYC 1 cut(s) 361
Fsp4HI GCNGC 6 cut(s) 111, 114, 207, 372, 591, 720
FspBI CTAG 4 cut(s) 54, 237, 443, 737
GluI GCNGC 6 cut(s) 111, 114, 207, 372, 591, 720
GsaI CCCAGC 1 cut(s) 330
HaeIII GGCC 3 cut(s) 281, 498, 533
Hin1II CATG 4 cut(s) 206, 611, 726, 887
HincII GTYRAC 2 cut(s) 308, 714
HindII GTYRAC 2 cut(s) 308, 714
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 5 cut(s) 643, 659, 668, 710, 854
HphI GGTGA 3 cut(s) 292, 546, 911
Hpy166II GTNNAC 3 cut(s) 260, 308, 714
Hpy188I TCNGA 7 cut(s) 7, 19, 616, 640, 664, 832, 853
Hpy188III TCNNGA 8 cut(s) 38, 83, 392, 543, 578, 688, 778, 789
Hpy8I GTNNAC 3 cut(s) 260, 308, 714
HpyAV CCTTC 3 cut(s) 271, 805, 811
HpyCH4III ACNGT 1 cut(s) 698
HpyCH4IV ACGT 1 cut(s) 563
HpyCH4V TGCA 6 cut(s) 209, 371, 611, 677, 719, 887
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 215, 322, 901
HpyF3I CTNAG 5 cut(s) 18, 144, 312, 360, 787
HpySE526I ACGT 1 cut(s) 563
Hsp92II CATG 4 cut(s) 206, 611, 726, 887
Kzo9I GATC 3 cut(s) 418, 523, 791
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 2 cut(s) 123, 379
Lsp1109I GCAGC 6 cut(s) 100, 122, 193, 383, 577, 731
LweI GCATC 2 cut(s) 358, 620
MaeI CTAG 4 cut(s) 54, 237, 443, 737
MaeII ACGT 1 cut(s) 563
MaeIII GTNAC 3 cut(s) 38, 298, 669
MalI GATC 3 cut(s) 420, 525, 793
MboI GATC 3 cut(s) 418, 523, 791
MboII GAAGA 5 cut(s) 176, 352, 364, 407, 840
MflI RGATCY 1 cut(s) 791
MhlI GDGCHC 2 cut(s) 361, 906
MlsI TGGCCA 1 cut(s) 498
MluCI AATT 2 cut(s) 387, 910
MluNI TGGCCA 1 cut(s) 498
MlyI GAGTC 2 cut(s) 677, 719
MmeI TCCRAC 1 cut(s) 618
MnlI CCTC 9 cut(s) 154, 336, 348, 424, 515, 539, 594, 675, 722
Mox20I TGGCCA 1 cut(s) 498
Mph1103I ATGCAT 2 cut(s) 613, 889
MroXI GAANNNNTTC 1 cut(s) 844
MscI TGGCCA 1 cut(s) 498
MseI TTAA 4 cut(s) 192, 477, 752, 765
MslI CAYNNNNRTG 2 cut(s) 272, 882
Msp20I TGGCCA 1 cut(s) 498
MspA1I CMGCKG 1 cut(s) 113
MspR9I CCNGG 2 cut(s) 376, 521
MvaI CCWGG 2 cut(s) 376, 521
MwoI GCNNNNNNNGC 4 cut(s) 55, 215, 322, 901
NdeII GATC 3 cut(s) 418, 523, 791
NlaIII CATG 4 cut(s) 206, 611, 726, 887
NlaIV GGNNCC 1 cut(s) 793
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 3 cut(s) 38, 298, 669
NsiI ATGCAT 2 cut(s) 613, 889
NspI RCATGY 3 cut(s) 206, 611, 887
NspV TTCGAA 2 cut(s) 338, 922
OliI CACNNNNGTG 1 cut(s) 272
PaeI GCATGC 2 cut(s) 611, 887
PaqCI CACCTGC 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 844
PfeI GAWTC 3 cut(s) 643, 659, 854
PflMI CCANNNNNTGG 1 cut(s) 653
PfoI TCCNGGA 1 cut(s) 519
PkrI GCNGC 6 cut(s) 112, 115, 208, 373, 592, 721
PleI GAGTC 2 cut(s) 676, 718
PpsI GAGTC 2 cut(s) 676, 718
Ppu21I YACGTR 1 cut(s) 564
PshBI ATTAAT 1 cut(s) 477
Psp6I CCWGG 2 cut(s) 374, 519
PspFI CCCAGC 1 cut(s) 326
PspGI CCWGG 2 cut(s) 374, 519
PspN4I GGNNCC 1 cut(s) 793
PspPI GGNCC 1 cut(s) 532
PstI CTGCAG 2 cut(s) 211, 721
PsuI RGATCY 1 cut(s) 791
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 2 cut(s) 566, 824
RsaNI GTAC 2 cut(s) 565, 823
RseI CAYNNNNRTG 2 cut(s) 272, 882
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 4 cut(s) 192, 477, 752, 765
SatI GCNGC 6 cut(s) 111, 114, 207, 372, 591, 720
Sau3AI GATC 3 cut(s) 418, 523, 791
Sau96I GGNCC 1 cut(s) 532
SchI GAGTC 2 cut(s) 677, 719
ScrFI CCNGG 2 cut(s) 376, 521
SduI GDGCHC 2 cut(s) 361, 906
SfaNI GCATC 2 cut(s) 358, 620
SfcI CTRYAG 3 cut(s) 207, 229, 717
SfuI TTCGAA 2 cut(s) 338, 922
SmiMI CAYNNNNRTG 2 cut(s) 272, 882
SphI GCATGC 2 cut(s) 611, 887
Sse9I AATT 2 cut(s) 387, 910
SsiI CCGC 1 cut(s) 837
SspMI CTAG 4 cut(s) 54, 237, 443, 737
StyD4I CCNGG 2 cut(s) 374, 519
TaaI ACNGT 1 cut(s) 698
TaiI ACGT 1 cut(s) 566
TaqI TCGA 7 cut(s) 338, 421, 456, 577, 687, 857, 922
TasI AATT 2 cut(s) 387, 910
TatI WGTACW 1 cut(s) 822
TfiI GAWTC 3 cut(s) 643, 659, 854
Tru1I TTAA 4 cut(s) 192, 477, 752, 765
Tru9I TTAA 4 cut(s) 192, 477, 752, 765
TscAI CASTG 1 cut(s) 764
TseFI GTSAC 3 cut(s) 38, 298, 669
TseI GCWGC 6 cut(s) 110, 113, 206, 371, 590, 719
Tsp45I GTSAC 3 cut(s) 38, 298, 669
TspDTI ATGAA 4 cut(s) 116, 450, 495, 540
TspGWI ACGGA 1 cut(s) 904
TspRI CASTG 1 cut(s) 764
Van91I CCANNNNNTGG 1 cut(s) 653
VspI ATTAAT 1 cut(s) 477
XapI RAATTY 1 cut(s) 387
XceI RCATGY 3 cut(s) 206, 611, 887
XmnI GAANNNNTTC 1 cut(s) 844
XspI CTAG 4 cut(s) 54, 237, 443, 737
Zsp2I ATGCAT 2 cut(s) 613, 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.