Rorug06G0230500

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002523
Physical Location & Seq
Reverse (-)
37133326 .. 37134541
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0230500.1

Sequence Viewer

Length: 405 bp
ATGCTTGCAAATGTACATGTATGTACAGTATGTGTAGCTGGAGACGCGCTCCACCCCATGACCCCAGACATTGGACAAGGCGGCTGTGTTGCATTAGAGGATGGTGTTGTATTAGCAAGGTGTCTCGGTGAGGCCTTGTTGGAGAATCGGAGCCAAGAAATTAGAGATGAAGGTGAAGAAGGAAAAGTGGAATATAAAATGATTGAAAGAGGATTGAATAAGTATGCTAGTGAGAGGAAATGGAGAAGTTTTGATCTTATTAGTACAGCTTATGTGGTTGGTTTTATACAGGAGGCTGATGGAAAAATAATGACTTTCTTGAGGGACAAGTTTTTCTCTCCAATCCTGGCCGGGTTGCGGTTGAAGAAGGCTGATTATGATTGTGGTAAGCTCAGAAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

134

Amino Acids

14.85

Weight (kDa)

5.72

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 9 - 56 7.7e-06 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 71
AccII CGCG 1 cut(s) 47
AciI CCGC 2 cut(s) 81, 358
AcoI YGGCCR 1 cut(s) 348
AfaI GTAC 3 cut(s) 15, 25, 265
AfiI CCNNNNNNNGG 2 cut(s) 71, 357
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 3 cut(s) 206, 217, 364
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 4 cut(s) 38, 269, 391, 399
AluI AGCT 4 cut(s) 38, 269, 391, 399
Alw26I GTCTC 2 cut(s) 36, 128
AoxI GGCC 2 cut(s) 132, 348
AspLEI GCGC 1 cut(s) 49
AsuC2I CCSGG 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 140, 185
BccI CCATC 2 cut(s) 95, 293
BciT130I CCWGG 1 cut(s) 347
BcnI CCSGG 1 cut(s) 352
BcoDI GTCTC 2 cut(s) 36, 128
BfaI CTAG 1 cut(s) 228
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
Bme1390I CCNGG 2 cut(s) 347, 352
BmiI GGNNCC 1 cut(s) 152
BmrFI CCNGG 2 cut(s) 347, 352
BplI GAGNNNNNCTC 2 cut(s) 33, 65
BpmI CTGGAG 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 340
BpuMI CCSGG 1 cut(s) 352
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 357
BseBI CCWGG 1 cut(s) 347
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 2 cut(s) 71, 357
Bsh1236I CGCG 1 cut(s) 47
BshFI GGCC 2 cut(s) 134, 350
BsiSI CCGG 1 cut(s) 351
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 2 cut(s) 71, 357
BsmAI GTCTC 2 cut(s) 36, 128
BsmBI CGTCTC 1 cut(s) 36
BsmFI GGGAC 1 cut(s) 338
BsnI GGCC 2 cut(s) 134, 350
Bsp1407I TGTACA 2 cut(s) 13, 23
Bsp143I GATC 1 cut(s) 253
BspACI CCGC 2 cut(s) 81, 358
BspANI GGCC 2 cut(s) 134, 350
BspCNI CTCAG 1 cut(s) 405
BspFNI CGCG 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 152
BsrGI TGTACA 2 cut(s) 13, 23
BssMI GATC 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 1 cut(s) 28
BstAUI TGTACA 2 cut(s) 13, 23
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 392
BstF5I GGATG 1 cut(s) 106
BstFNI CGCG 1 cut(s) 47
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 1 cut(s) 256
BstMAI GTCTC 2 cut(s) 36, 128
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 1 cut(s) 347
BstNSI RCATGY 1 cut(s) 20
BstSCI CCNGG 2 cut(s) 345, 350
BstUI CGCG 1 cut(s) 47
BsuRI GGCC 2 cut(s) 134, 350
BtsCI GGATG 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 49
CseI GACGC 1 cut(s) 53
Csp6I GTAC 3 cut(s) 14, 24, 264
CviAII CATG 2 cut(s) 17, 58
CviQI GTAC 3 cut(s) 14, 24, 264
DdeI CTNAG 1 cut(s) 392
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
EaeI YGGCCR 1 cut(s) 348
Eco147I AGGCCT 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 345
Esp3I CGTCTC 1 cut(s) 36
FaeI CATG 2 cut(s) 20, 61
FaiI YATR 9 cut(s) 18, 22, 31, 59, 195, 225, 273, 287, 378
FaqI GGGAC 1 cut(s) 338
FatI CATG 2 cut(s) 16, 57
Fnu4HI GCNGC 1 cut(s) 82
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 82
FspBI CTAG 1 cut(s) 228
GlaI GCGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 82
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 2 cut(s) 134, 350
HapII CCGG 1 cut(s) 351
HgaI GACGC 1 cut(s) 53
HhaI GCGC 1 cut(s) 49
Hin1II CATG 2 cut(s) 20, 61
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HinfI GANTC 1 cut(s) 145
HpaII CCGG 1 cut(s) 351
HphI GGTGA 2 cut(s) 140, 185
Hpy188I TCNGA 2 cut(s) 150, 395
Hpy188III TCNNGA 1 cut(s) 319
HpyAV CCTTC 3 cut(s) 164, 173, 361
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 8, 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 392
Hsp92II CATG 2 cut(s) 20, 61
HspAI GCGC 1 cut(s) 47
Kzo9I GATC 1 cut(s) 253
LmnI GCTCC 2 cut(s) 54, 150
LpnPI CCDG 6 cut(s) 24, 78, 275, 332, 359, 364
MaeI CTAG 1 cut(s) 228
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 2 cut(s) 188, 376
MluCI AATT 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 6 cut(s) 91, 124, 203, 228, 286, 315
MseI TTAA 1 cut(s) 403
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 2 cut(s) 347, 352
MvaI CCWGG 1 cut(s) 347
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 44
NciI CCSGG 1 cut(s) 352
NdeII GATC 1 cut(s) 253
NlaIII CATG 2 cut(s) 20, 61
NlaIV GGNNCC 1 cut(s) 152
NspI RCATGY 1 cut(s) 20
PceI AGGCCT 1 cut(s) 134
PciI ACATGT 1 cut(s) 16
PfeI GAWTC 1 cut(s) 145
PflMI CCANNNNNTGG 1 cut(s) 71
PkrI GCNGC 1 cut(s) 83
PscI ACATGT 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 152
RsaI GTAC 3 cut(s) 15, 25, 265
RsaNI GTAC 3 cut(s) 14, 24, 264
SaqAI TTAA 1 cut(s) 403
SatI GCNGC 1 cut(s) 82
Sau3AI GATC 1 cut(s) 253
ScrFI CCNGG 2 cut(s) 347, 352
SetI ASST 6 cut(s) 40, 122, 175, 271, 393, 401
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 1 cut(s) 159
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 2 cut(s) 81, 358
SspMI CTAG 1 cut(s) 228
StuI AGGCCT 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 345, 350
TaaI ACNGT 1 cut(s) 28
TasI AATT 1 cut(s) 159
TatI WGTACW 3 cut(s) 13, 23, 263
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 1 cut(s) 403
Tru9I TTAA 1 cut(s) 403
TspDTI ATGAA 1 cut(s) 183
Van91I CCANNNNNTGG 1 cut(s) 71
XceI RCATGY 1 cut(s) 20
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.