Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000639.1

Orthogroup ID

OG0002523

Physical Location & Seq

Genomic Coordinates Reverse (-)

90801 .. 94439

Gene Structure 3639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000639.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atggcggtttgggtcgcgggtagtgagggatcgaggcggctccggtcatggtggcatgtagtggacggagctcagcctgactgtttcatacgggtttgcaaaacgagcctaatcggaatcggaccagtgagagtcctctgcggcgtcaacgttgaaccaacactctcgcgggttgctcaaatggaggatgcccaagaagtatctgagacaatgtcggagggatcatccgaaaagatacaggaaactcgcgatgaaatgctctccaggcacaggaaagagacttcaaagctgcaggacaaggaaattcaattgaaaaaggctgcagcaaaaggtagcaaggctgaacaaaaagctaagaaaaagcaggtggaggaagagatttctcgactttctgctgagcttaaagagaaacaagccgaagaacttgcatcattaggctatagcagcactaacaatggaggtgaaaagagtaatctggatactttagtgaaggccatagctggtgtttctgttagcagtcaacctgagaatgcaaagcctagcaagagttcaaagagaaaagtgaaaagggctcaggaggatgcagcaagggagcagagaattcaagaagagcagagcaacttagtaagcgatcgaatggttgaagatgagaaactaggaaaaaagcttgaaccccttggtttgacaattaatgagataaagcctgatggtcattgcctctaccgcgctatccaggatcagctggctcacctttctggaggttcttcaccttacacataccaagagcttcgagaaatggtggctgcgtatatgaggaagcatgcacctgatcttctcccatttttcttgtcagacaatcaaggagatggtgattctgatgattccgttgctgaaaggtttgagaattactgtaaggaagtggagtcaacagcagcatggggtggacagctagagcttggggctttaactcactgccttaaaaagccaatcaaggtatactcaggatcattccctgatgtggagatgggtaaggagtacaaatctgagagtggaaatggttttggttcttctggttcgagtattatgttgtcatatcataagcacgcattcgggcttggtgagcactataattctgtggtcccaatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

382

Amino Acids

42.17

Weight (kDa)

6.07

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62940 AT3G62940 AT3G62940 AT3G62940 AT3G62940
fragaria_vesca	FvH4_2g14201 FvH4_2g14201 FvH4_2g14201
malus_domestica	MD03G1278200.v1.1 MD11G1300200.v1.1
prunus_persica	Prupe.2G090200_v2.0.a1 Prupe.2G090200_v2.0.a1 Prupe.8G254400_v2.0.a1 Prupe.8G254400_v2.0.a1 Prupe.8G254400_v2.0.a1
pyrus_communis	pycom03g22160 pycom11g26360
rosa_chinensis	RchiOBHm_Chr3g0496291 RchiOBHm_Chr5g0001231 RchiOBHm_Chr5g0082561 RchiOBHm_Chr6g0247511 RchiOBHm_Chr6g0292881
rosa_laevigata	RLG00000011983 RLG00000015114 RLG00000015120
rosa_multiflora	Rmu_sc0000147.1_g000079 Rmu_sc0000391.1_g000019 Rmu_sc0000391.1_g000020 Rmu_sc0000639.1_g000016 Rmu_ssc0000454.1_g000017
rosa_roxburghii	Rroxscaffold_4G00287890 Rroxscaffold_6G00416780 Rroxscaffold_7G00174620 Rroxscaffold_7G00186560
rosa_rugosa	Rorug06G0230500
rosa_samantha	Rh3CG361400 Rh6AG343800 Rh6BG351000 Rh6CG358000 Rh6DG343900
rosa_wichuraiana	Rw6G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	355
Acc36I	ACCTGC	1 cut(s)	355
AccI	GTMKAC	1 cut(s)	996
AccII	CGCG	4 cut(s)	17, 169, 249, 726
AciI	CCGC	6 cut(s)	5, 17, 37, 141, 169, 724
AclI	AACGTT	1 cut(s)	150
AclWI	GGATC	4 cut(s)	37, 229, 744, 1012
AcsI	RAATTY	2 cut(s)	303, 600
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	1037
AfiI	CCNNNNNNNGG	2 cut(s)	270, 1018
AgsI	TTSAA	8 cut(s)	155, 285, 308, 313, 552, 605, 644, 671
AjnI	CCWGG	2 cut(s)	263, 732
Alw21I	GWGCWC	2 cut(s)	73, 1125
Alw26I	GTCTC	2 cut(s)	200, 272
AlwI	GGATC	4 cut(s)	37, 229, 744, 1012
AoxI	GGCC	1 cut(s)	492
ApeKI	GCWGC	7 cut(s)	289, 320, 323, 444, 584, 803, 932
ApoI	RAATTY	2 cut(s)	303, 600
AseI	ATTAAT	1 cut(s)	690
AspLEI	GCGC	1 cut(s)	728
AspS9I	GGNCC	2 cut(s)	122, 1138
AsuHPI	GGTGA	5 cut(s)	473, 740, 759, 881, 1130
AvaII	GGWCC	2 cut(s)	122, 1138
BaeI	ACNNNNGTAYC	2 cut(s)	471, 504
BanII	GRGCYC	2 cut(s)	73, 574
Bbv12I	GWGCWC	2 cut(s)	73, 1125
BbvI	GCAGC	7 cut(s)	276, 307, 335, 456, 596, 790, 944
BccI	CCATC	3 cut(s)	701, 860, 1018
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciT130I	CCWGG	2 cut(s)	265, 734
BciVI	GTATCC	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	200, 272
BfaI	CTAG	3 cut(s)	540, 656, 950
BfmI	CTRYAG	3 cut(s)	290, 321, 439
BfuAI	ACCTGC	1 cut(s)	355
BfuI	GTATCC	1 cut(s)	472
BisI	GCNGC	9 cut(s)	38, 142, 290, 321, 324, 445, 585, 804, 933
BlpI	GCTNAGC	2 cut(s)	72, 396
BlsI	GCNGC	9 cut(s)	39, 143, 291, 322, 325, 446, 586, 805, 934
Bme1390I	CCNGG	2 cut(s)	265, 734
Bme18I	GGWCC	2 cut(s)	122, 1138
BmgT120I	GGNCC	2 cut(s)	122, 1138
BmiI	GGNNCC	2 cut(s)	41, 1140
BmrFI	CCNGG	2 cut(s)	265, 734
BmsI	GCATC	3 cut(s)	178, 437, 571
BpmI	CTGGAG	2 cut(s)	247, 777
Bpu10I	CCTNAGC	1 cut(s)	573
Bpu1102I	GCTNAGC	2 cut(s)	72, 396
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	676
BsaWI	WCCGGW	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 1018
Bse1I	ACTGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	712
BseBI	CCWGG	2 cut(s)	265, 734
BseDI	CCNNGG	1 cut(s)	676
BseGI	GGATG	3 cut(s)	193, 224, 586
BseLI	CCNNNNNNNGG	2 cut(s)	270, 1018
BseMI	GCAATG	1 cut(s)	712
BseMII	CTCAG	7 cut(s)	86, 195, 387, 516, 587, 1014, 1035
BseNI	ACTGG	1 cut(s)	125
BseXI	GCAGC	7 cut(s)	276, 307, 335, 456, 596, 790, 944
Bsh1236I	CGCG	4 cut(s)	17, 169, 249, 726
Bsh1285I	CGRYCG	1 cut(s)	634
BshFI	GGCC	1 cut(s)	494
BsiEI	CGRYCG	1 cut(s)	634
BsiHKAI	GWGCWC	2 cut(s)	73, 1125
BsiSI	CCGG	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	1124
BslI	CCNNNNNNNGG	2 cut(s)	270, 1018
BsmAI	GTCTC	2 cut(s)	200, 272
BsmFI	GGGAC	1 cut(s)	1124
BsmI	GAATGC	2 cut(s)	535, 1106
BsnI	GGCC	1 cut(s)	494
Bsp1286I	GDGCHC	3 cut(s)	73, 574, 1125
Bsp143I	GATC	6 cut(s)	29, 221, 631, 736, 829, 1004
Bsp1720I	GCTNAGC	2 cut(s)	72, 396
Bsp68I	TCGCGA	1 cut(s)	249
BspACI	CCGC	6 cut(s)	5, 17, 37, 141, 169, 724
BspANI	GGCC	1 cut(s)	494
BspCNI	CTCAG	7 cut(s)	85, 196, 388, 517, 586, 1013, 1036
BspFNI	CGCG	4 cut(s)	17, 169, 249, 726
BspLI	GGNNCC	2 cut(s)	41, 1140
BspMAI	CTGCAG	2 cut(s)	294, 325
BspMI	ACCTGC	1 cut(s)	355
BspPI	GGATC	4 cut(s)	37, 229, 744, 1012
BspQI	GCTCTTC	1 cut(s)	603
BsrDI	GCAATG	1 cut(s)	712
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	676
BssMI	GATC	6 cut(s)	29, 221, 631, 736, 829, 1004
BssNAI	GTATAC	1 cut(s)	997
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	676
Bst1107I	GTATAC	1 cut(s)	997
Bst2UI	CCWGG	2 cut(s)	265, 734
Bst4CI	ACNGT	2 cut(s)	83, 911
Bst6I	CTCTTC	2 cut(s)	369, 603
BstACI	GRCGYC	1 cut(s)	144
BstC8I	GCNNGC	3 cut(s)	744, 822, 1104
BstDEI	CTNAG	9 cut(s)	72, 204, 354, 396, 525, 573, 622, 1000, 1044
BstF5I	GGATG	3 cut(s)	193, 224, 586
BstFNI	CGCG	4 cut(s)	17, 169, 249, 726
BstHHI	GCGC	1 cut(s)	728
BstKTI	GATC	6 cut(s)	32, 224, 634, 739, 832, 1007
BstMAI	GTCTC	2 cut(s)	200, 272
BstMBI	GATC	6 cut(s)	29, 221, 631, 736, 829, 1004
BstMCI	CGRYCG	1 cut(s)	634
BstMWI	GCNNNNNNNGC	5 cut(s)	105, 265, 444, 723, 1120
BstNI	CCWGG	2 cut(s)	265, 734
BstNSI	RCATGY	2 cut(s)	59, 824
BstSCI	CCNGG	2 cut(s)	263, 732
BstSFI	CTRYAG	3 cut(s)	290, 321, 439
BstUI	CGCG	4 cut(s)	17, 169, 249, 726
BstV1I	GCAGC	7 cut(s)	276, 307, 335, 456, 596, 790, 944
BstZ17I	GTATAC	1 cut(s)	997
BsuI	GTATCC	1 cut(s)	472
BsuRI	GGCC	1 cut(s)	494
BtgZI	GCGATG	1 cut(s)	264
BtsCI	GGATG	3 cut(s)	193, 224, 586
BtsI	GCAGTG	1 cut(s)	970
BtsIMutI	CAGTG	2 cut(s)	132, 970
BtuMI	TCGCGA	1 cut(s)	249
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	3 cut(s)	744, 822, 1104
CfoI	GCGC	1 cut(s)	728
Cfr13I	GGNCC	2 cut(s)	122, 1138
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	1 cut(s)	1036
CviAII	CATG	4 cut(s)	48, 56, 821, 936
CviQI	GTAC	1 cut(s)	1036
DdeI	CTNAG	9 cut(s)	72, 204, 354, 396, 525, 573, 622, 1000, 1044
DpnI	GATC	6 cut(s)	31, 223, 633, 738, 831, 1006
DpnII	GATC	6 cut(s)	29, 221, 631, 736, 829, 1004
Eam1104I	CTCTTC	2 cut(s)	369, 603
EarI	CTCTTC	2 cut(s)	369, 603
Ecl136II	GAGCTC	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	676
Eco24I	GRGCYC	2 cut(s)	73, 574
Eco47I	GGWCC	2 cut(s)	122, 1138
Eco53kI	GAGCTC	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	600
EcoRII	CCWGG	2 cut(s)	263, 732
EcoT14I	CCWWGG	1 cut(s)	676
EcoT38I	GRGCYC	2 cut(s)	73, 574
ErhI	CCWWGG	1 cut(s)	676
FaeI	CATG	4 cut(s)	51, 59, 824, 939
FaqI	GGGAC	1 cut(s)	1124
FatI	CATG	4 cut(s)	47, 55, 820, 935
FauI	CCCGC	2 cut(s)	10, 162
FblI	GTMKAC	1 cut(s)	996
Fnu4HI	GCNGC	9 cut(s)	38, 142, 290, 321, 324, 445, 585, 804, 933
FokI	GGATG	3 cut(s)	200, 211, 593
FriOI	GRGCYC	2 cut(s)	73, 574
Fsp4HI	GCNGC	9 cut(s)	38, 142, 290, 321, 324, 445, 585, 804, 933
FspBI	CTAG	3 cut(s)	540, 656, 950
GlaI	GCGC	1 cut(s)	727
GluI	GCNGC	9 cut(s)	38, 142, 290, 321, 324, 445, 585, 804, 933
GsuI	CTGGAG	2 cut(s)	247, 777
HaeIII	GGCC	1 cut(s)	494
HapII	CCGG	1 cut(s)	43
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	1 cut(s)	728
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	4 cut(s)	51, 59, 824, 939
Hin6I	GCGC	1 cut(s)	726
HinP1I	GCGC	1 cut(s)	726
HincII	GTYRAC	3 cut(s)	148, 521, 927
HindII	GTYRAC	3 cut(s)	148, 521, 927
HindIII	AAGCTT	1 cut(s)	665
HinfI	GANTC	5 cut(s)	117, 132, 872, 881, 923
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	5 cut(s)	473, 740, 759, 881, 1130
Hpy166II	GTNNAC	6 cut(s)	64, 148, 521, 927, 944, 997
Hpy188I	TCNGA	8 cut(s)	116, 122, 205, 217, 229, 853, 877, 1045
Hpy188III	TCNNGA	8 cut(s)	248, 384, 476, 575, 605, 756, 791, 1002
Hpy8I	GTNNAC	6 cut(s)	64, 148, 521, 927, 944, 997
HpyAV	CCTTC	1 cut(s)	484
HpyCH4III	ACNGT	2 cut(s)	83, 911
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	7 cut(s)	99, 292, 323, 428, 533, 584, 824
HpyF10VI	GCNNNNNNNGC	5 cut(s)	105, 265, 444, 723, 1120
HpyF3I	CTNAG	9 cut(s)	72, 204, 354, 396, 525, 573, 622, 1000, 1044
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	4 cut(s)	51, 59, 824, 939
HspAI	GCGC	1 cut(s)	726
Kzo9I	GATC	6 cut(s)	29, 221, 631, 736, 829, 1004
LguI	GCTCTTC	1 cut(s)	603
LmnI	GCTCC	3 cut(s)	45, 68, 592
Lsp1109I	GCAGC	7 cut(s)	276, 307, 335, 456, 596, 790, 944
LweI	GCATC	3 cut(s)	178, 437, 571
MaeI	CTAG	3 cut(s)	540, 656, 950
MaeII	ACGT	1 cut(s)	150
MalI	GATC	6 cut(s)	31, 223, 633, 738, 831, 1006
MboI	GATC	6 cut(s)	29, 221, 631, 736, 829, 1004
MboII	GAAGA	7 cut(s)	386, 431, 620, 656, 756, 824, 1059
MfeI	CAATTG	1 cut(s)	308
MhlI	GDGCHC	3 cut(s)	73, 574, 1125
MluCI	AATT	6 cut(s)	303, 308, 600, 687, 904, 1129
MlyI	GAGTC	2 cut(s)	141, 932
MmeI	TCCRAC	1 cut(s)	195
MseI	TTAA	4 cut(s)	402, 690, 965, 978
MspA1I	CMGCKG	1 cut(s)	742
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	2 cut(s)	265, 734
MunI	CAATTG	1 cut(s)	308
Mva1269I	GAATGC	2 cut(s)	535, 1106
MvaI	CCWGG	2 cut(s)	265, 734
MvnI	CGCG	4 cut(s)	17, 169, 249, 726
MwoI	GCNNNNNNNGC	5 cut(s)	105, 265, 444, 723, 1120
NdeII	GATC	6 cut(s)	29, 221, 631, 736, 829, 1004
NlaIII	CATG	4 cut(s)	51, 59, 824, 939
NlaIV	GGNNCC	2 cut(s)	41, 1140
NruI	TCGCGA	1 cut(s)	249
NspI	RCATGY	2 cut(s)	59, 824
PaeI	GCATGC	1 cut(s)	824
PaqCI	CACCTGC	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	603
PctI	GAATGC	2 cut(s)	535, 1106
PfeI	GAWTC	3 cut(s)	117, 872, 881
PflFI	GACNNNGTC	1 cut(s)	211
PfoI	TCCNGGA	1 cut(s)	732
PkrI	GCNGC	9 cut(s)	39, 143, 291, 322, 325, 446, 586, 805, 934
Ple19I	CGATCG	1 cut(s)	634
PleI	GAGTC	2 cut(s)	140, 931
PpsI	GAGTC	2 cut(s)	140, 931
PshBI	ATTAAT	1 cut(s)	690
Psp124BI	GAGCTC	1 cut(s)	73
Psp1406I	AACGTT	1 cut(s)	150
Psp6I	CCWGG	2 cut(s)	263, 732
PspGI	CCWGG	2 cut(s)	263, 732
PspN4I	GGNNCC	2 cut(s)	41, 1140
PspPI	GGNCC	2 cut(s)	122, 1138
PstI	CTGCAG	2 cut(s)	294, 325
PsyI	GACNNNGTC	1 cut(s)	211
PvuI	CGATCG	1 cut(s)	634
PvuII	CAGCTG	1 cut(s)	742
RruI	TCGCGA	1 cut(s)	249
RsaI	GTAC	1 cut(s)	1037
RsaNI	GTAC	1 cut(s)	1036
SacI	GAGCTC	1 cut(s)	73
SapI	GCTCTTC	1 cut(s)	603
SaqAI	TTAA	4 cut(s)	402, 690, 965, 978
SatI	GCNGC	9 cut(s)	38, 142, 290, 321, 324, 445, 585, 804, 933
Sau3AI	GATC	6 cut(s)	29, 221, 631, 736, 829, 1004
Sau96I	GGNCC	2 cut(s)	122, 1138
SchI	GAGTC	2 cut(s)	141, 932
ScrFI	CCNGG	2 cut(s)	265, 734
SduI	GDGCHC	3 cut(s)	73, 574, 1125
SfaNI	GCATC	3 cut(s)	178, 437, 571
SfcI	CTRYAG	3 cut(s)	290, 321, 439
SinI	GGWCC	2 cut(s)	122, 1138
SphI	GCATGC	1 cut(s)	824
Sse9I	AATT	6 cut(s)	303, 308, 600, 687, 904, 1129
SsiI	CCGC	6 cut(s)	5, 17, 37, 141, 169, 724
SspMI	CTAG	3 cut(s)	540, 656, 950
SstI	GAGCTC	1 cut(s)	73
StyD4I	CCNGG	2 cut(s)	263, 732
StyI	CCWWGG	1 cut(s)	676
TaaI	ACNGT	2 cut(s)	83, 911
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	5 cut(s)	32, 385, 634, 790, 1076
TasI	AATT	6 cut(s)	303, 308, 600, 687, 904, 1129
TatI	WGTACW	1 cut(s)	1035
TauI	GCSGC	2 cut(s)	40, 144
TfiI	GAWTC	3 cut(s)	117, 872, 881
Tru1I	TTAA	4 cut(s)	402, 690, 965, 978
Tru9I	TTAA	4 cut(s)	402, 690, 965, 978
TscAI	CASTG	2 cut(s)	132, 977
TseI	GCWGC	7 cut(s)	289, 320, 323, 444, 584, 803, 932
TspDTI	ATGAA	2 cut(s)	76, 267
TspGWI	ACGGA	2 cut(s)	81, 874
TspRI	CASTG	2 cut(s)	132, 977
Tth111I	GACNNNGTC	1 cut(s)	211
VpaK11BI	GGWCC	2 cut(s)	122, 1138
VspI	ATTAAT	1 cut(s)	690
XapI	RAATTY	2 cut(s)	303, 600
XceI	RCATGY	2 cut(s)	59, 824
XmiI	GTMKAC	1 cut(s)	996
XspI	CTAG	3 cut(s)	540, 656, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.