Rroxscaffold_6G00416780

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002523
Physical Location & Seq
Reverse (-)
38663467 .. 38668360
4894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00416780.1

Sequence Viewer

Length: 2085 bp
ATGGGGCCGAGGAGCGCTGCAAATCCACCTCCATACTCGTCAGCACCGCCGCGTCCACCTGACTTAGATGAAGTGAGGAGGAAGAGGATCCAAATCGCAAGAGAACAGGCCAATGAACAAGCAGCTACGTGGCGCCGTGAGTTTGAGAAAACTATTGCGTCGTTCCAGTCTGAGTTACTAAACGAGATGAGGCAATTTCGATCGGAGCTCATAGCTCAAGTGATGGAGCCGTCGATGCCAACCTCGGCCGGACCGGTCAGATCTCTGCCAGTGACTCAGCCTGTCTCCTCGGAGCTGCATTTTGGGACCATTGATTCCTACAAACCGCCACCACCACCACCGGCCATGGCAGATCTACCACCACCGGCCACGGCGGGTCTCTACCCCTACCAGCTGCAACAACCACCTCCGCCGCCACCTAGACCATCAGTCACCATCCACGCGTTGGCTGAGTCACCATCCCCAGCCCACATGAGGTACACCAACCGCTCAGTCTCAATTGGTGATTTCAATCACAACATGAACCAGCAACATTTTTCTTTGAATGATGATTGTGGTGCTTTGAGTCCTGTCTCTGTTGCTAAAGTGACTGATATTGATGAGAAATTAGATATGGGGAAGGGAGAGATTTCTGATAAGATGGTTAAGGTGCATAGTGGGGTTGGTAGAAAGTTCAATGAGCTAGAGAGTGTTACTGTTAAGCAAGATAATCAGGGACCAAGTTTGTGTGGGAAAAGAGGGGAATACCCTGCACTCTGCATGTTTGATAAAATGTTGCAATCAGATGGGATATGTAATGCAGGAAGGACCAGTATTGCTCCTATGAGCATTCGAGACAAAGGTGGAGGACTCGCTTCTAAACTAGGAAACAAGTATTTGCTTGTTAAGGGTTGTGATGATGTTAAAGCTGCTACATCTATGTCTGCTGGGAATGATGTGCAATTTGGAACAATGCTTGTTACTGCTATCAACAAGGCTAATGGAGGTGAAGCCAGTAATTTGGATACTTTAATGAAGGTCATAGCTGGTGTTCCTGTAAGCAGTCACTTTGAGAATGTAAAGCCTGGCAAGAGTTCAAAGAAAAAAGTGATAGGGGCTCAGGAGGATGCAAGAAGGAAGCAGAGAAGTCAAGAAGAACAAAACAAGTCAATAAGCAATCAAATGGTTGAGGATGAGAAACCAGAAAAAAAGCTTGAACCCCTCGGGTTGACAATTAATGAGACAAAGGCTAATGGTCATTGTCTCTATAGTGCTATCCAGGATCAGCTAGCCCACCTTTTTGGAGGCTCTTCACTTTACTCATACCAAGGTCTTCGAGAAATGGTGACTGTGTATATGTGCCATGTACCTGAGGTCCCATCTTTCTTGCCAAACAACCAAGTAGATGGTGATTCTGAGGACTCACTTGGAGAAAGGATTGAGAATTACTGTAAGGAAGTGGAATCATCAGAAGCATGGGGAGGACATCTAGAGGTTGGAGCTTTAACTCATTGCCTTAAAAAGTGTCTCAGTATATGCTCAGGATCATTCCCTGATGTAGATAATGTGAATGGTATCATTGGACTAGCCCATTATATGGGTCAACAGCTTGATGAAACTACAAATAAATGGAGTTGGTGCAAACAAGAGTTCGGAGAAAAATATATGTTTGTGACTATTGACAACTTATGCATTGCTTTAGTTTTAAAATTTTGTCCAATTGGTATAGATGAGGGGCCAGAGACATGGTTTTTGGATGTGATGAATGGGAATTTGGACACAATGGCATCTGAGATGAATAAACTGCAGTTGTATATTGGTGTGGTACACCAAGGAATTAAGCTATTTTCTGTGCAAGGCTTGGGCAGTTTACTGGGTGATAGTATGAGGAACTTTTATCTTGTCCTTGTGGAAACTGATGACTCAAGTCAACATATGGAAGTGGAGAAAATGAATTTTATTAAAGCTTTTGAAATAGACTGTTTCATAGCTTTAAAGTTGGCACTGTTACTGCCTTTTAAACCACTACAGTTACAGTGTTTGGTTGCTTTTGAGGACAAGTTGAAGCAAGGAGGCATTTCTGACATTATTGGTAGAGACCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

694

Amino Acids

76.29

Weight (kDa)

5.58

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 410 - 511 2.3e-13 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 132
AccB7I CCANNNNNTGG 2 cut(s) 445, 1576
AccBSI CCGCTC 1 cut(s) 489
AccII CGCG 2 cut(s) 52, 443
AciI CCGC 7 cut(s) 47, 50, 326, 374, 410, 413, 487
AclWI GGATC 4 cut(s) 82, 95, 1269, 1531
AcoI YGGCCR 3 cut(s) 246, 342, 366
AcsI RAATTY 3 cut(s) 1688, 1750, 1933
AcyI GRCGYC 1 cut(s) 133
AfaI GTAC 3 cut(s) 479, 1347, 1806
AfeI AGCGCT 1 cut(s) 16
AfiI CCNNNNNNNGG 3 cut(s) 445, 474, 1576
AflIII ACRYGT 1 cut(s) 441
AgeI ACCGGT 1 cut(s) 253
AgsI TTSAA 7 cut(s) 511, 544, 676, 1077, 1196, 1952, 2044
AhdI GACNNNNNGTC 1 cut(s) 428
AjnI CCWGG 2 cut(s) 1063, 1257
AjuI GAANNNNNNNTTGG 2 cut(s) 1736, 1768
Alw21I GWGCWC 1 cut(s) 210
AlwI GGATC 4 cut(s) 82, 95, 1269, 1531
Ama87I CYCGRG 1 cut(s) 1202
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 6 cut(s) 5, 108, 246, 342, 366, 1715
ApeKI GCWGC 5 cut(s) 17, 122, 295, 394, 908
ApoI RAATTY 3 cut(s) 1688, 1750, 1933
ArsI GACNNNNNNTTYG 2 cut(s) 1714, 1746
AseI ATTAAT 1 cut(s) 1215
AsiGI ACCGGT 1 cut(s) 253
AspLEI GCGC 2 cut(s) 17, 135
AspS9I GGNCC 7 cut(s) 5, 251, 306, 716, 807, 1354, 1715
AsuHPI GGTGA 7 cut(s) 424, 447, 515, 998, 1336, 1400, 1868
AsuNHI GCTAGC 1 cut(s) 1267
AvaI CYCGRG 1 cut(s) 1202
AvaII GGWCC 5 cut(s) 251, 306, 716, 807, 1354
AxyI CCTNAGG 1 cut(s) 1350
BamHI GGATCC 1 cut(s) 87
BanI GGYRCC 1 cut(s) 132
BanII GRGCYC 2 cut(s) 210, 1099
BbsI GAAGAC 1 cut(s) 1304
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 5 cut(s) 4, 134, 282, 381, 895
BccI CCATC 8 cut(s) 217, 433, 443, 466, 634, 779, 1366, 1379
BceAI ACGGC 3 cut(s) 120, 214, 387
BciT130I CCWGG 2 cut(s) 1065, 1259
BciVI GTATCC 1 cut(s) 997
BfaI CTAG 6 cut(s) 420, 683, 863, 1268, 1469, 1565
BfmI CTRYAG 3 cut(s) 1246, 1784, 2006
BfoI RGCGCY 2 cut(s) 18, 136
BfuI GTATCC 1 cut(s) 997
BglII AGATCT 2 cut(s) 260, 352
BisI GCNGC 7 cut(s) 18, 50, 123, 296, 395, 413, 909
BlsI GCNGC 7 cut(s) 19, 51, 124, 297, 396, 414, 910
Bme1390I CCNGG 2 cut(s) 1065, 1259
Bme18I GGWCC 5 cut(s) 251, 306, 716, 807, 1354
BmeRI GACNNNNNGTC 1 cut(s) 428
BmeT110I CYCGRG 1 cut(s) 1202
BmgT120I GGNCC 7 cut(s) 5, 251, 306, 716, 807, 1354, 1715
BmiI GGNNCC 8 cut(s) 6, 89, 134, 228, 307, 717, 1356, 1716
BmrFI CCNGG 2 cut(s) 1065, 1259
BmrI ACTGGG 1 cut(s) 1862
BmsI GCATC 3 cut(s) 225, 1096, 1775
BmtI GCTAGC 1 cut(s) 1271
BmuI ACTGGG 1 cut(s) 1862
BoxI GACNNNNGTC 1 cut(s) 1905
BpiI GAAGAC 1 cut(s) 1304
Bpu10I CCTNAGC 2 cut(s) 1098, 1519
BpuEI CTTGAG 2 cut(s) 201, 1888
BsaAI YACGTR 1 cut(s) 129
BsaBI GATNNNNATC 2 cut(s) 92, 510
BsaHI GRCGYC 1 cut(s) 133
BsaI GGTCTC 2 cut(s) 383, 2070
BsaJI CCNNGG 8 cut(s) 8, 243, 288, 345, 369, 1201, 1306, 1810
BsaWI WCCGGW 1 cut(s) 253
Bsc4I CCNNNNNNNGG 3 cut(s) 445, 474, 1576
Bse118I RCCGGY 3 cut(s) 253, 340, 364
Bse1I ACTGG 5 cut(s) 166, 269, 810, 993, 1857
Bse21I CCTNAGG 1 cut(s) 1350
Bse3DI GCAATG 2 cut(s) 1489, 1671
Bse8I GATNNNNATC 2 cut(s) 92, 510
BseBI CCWGG 2 cut(s) 1065, 1259
BseDI CCNNGG 8 cut(s) 8, 243, 288, 345, 369, 1201, 1306, 1810
BseGI GGATG 5 cut(s) 435, 458, 1111, 1177, 1741
BseJI GATNNNNATC 2 cut(s) 92, 510
BseLI CCNNNNNNNGG 3 cut(s) 445, 474, 1576
BseMI GCAATG 2 cut(s) 1489, 1671
BseNI ACTGG 5 cut(s) 166, 269, 810, 993, 1857
BseRI GAGGAG 3 cut(s) 25, 91, 277
BseX3I CGGCCG 1 cut(s) 246
BseXI GCAGC 5 cut(s) 4, 134, 282, 381, 895
BseYI CCCAGC 2 cut(s) 463, 926
BsgI GTGCAG 1 cut(s) 735
Bsh1236I CGCG 2 cut(s) 52, 443
Bsh1285I CGRYCG 2 cut(s) 203, 249
BshFI GGCC 6 cut(s) 7, 110, 248, 344, 368, 1717
BshNI GGYRCC 1 cut(s) 132
BshTI ACCGGT 1 cut(s) 253
BsiEI CGRYCG 2 cut(s) 203, 249
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 1202
BsiSI CCGG 4 cut(s) 249, 254, 341, 365
BslFI GGGAC 3 cut(s) 319, 729, 1340
BslI CCNNNNNNNGG 3 cut(s) 445, 474, 1576
BsmFI GGGAC 3 cut(s) 319, 729, 1340
BsmI GAATGC 1 cut(s) 828
BsnI GGCC 6 cut(s) 7, 110, 248, 344, 368, 1717
Bso31I GGTCTC 2 cut(s) 383, 2070
BsoBI CYCGRG 1 cut(s) 1202
Bsp1286I GDGCHC 2 cut(s) 210, 1099
Bsp143I GATC 6 cut(s) 87, 200, 260, 352, 1261, 1523
Bsp19I CCATGG 1 cut(s) 345
BspACI CCGC 7 cut(s) 47, 50, 326, 374, 410, 413, 487
BspANI GGCC 6 cut(s) 7, 110, 248, 344, 368, 1717
BspFNI CGCG 2 cut(s) 52, 443
BspLI GGNNCC 8 cut(s) 6, 89, 134, 228, 307, 717, 1356, 1716
BspMAI CTGCAG 1 cut(s) 1788
BspOI GCTAGC 1 cut(s) 1271
BspPI GGATC 4 cut(s) 82, 95, 1269, 1531
BspQI GCTCTTC 1 cut(s) 1294
BspT107I GGYRCC 1 cut(s) 132
BspTNI GGTCTC 2 cut(s) 383, 2070
BsrBI CCGCTC 1 cut(s) 489
BsrDI GCAATG 2 cut(s) 1489, 1671
BsrFI RCCGGY 3 cut(s) 253, 340, 364
BsrI ACTGG 5 cut(s) 166, 269, 810, 993, 1857
BssAI RCCGGY 3 cut(s) 253, 340, 364
BssECI CCNNGG 8 cut(s) 8, 243, 288, 345, 369, 1201, 1306, 1810
BssMI GATC 6 cut(s) 87, 200, 260, 352, 1261, 1523
BssNI GRCGYC 1 cut(s) 133
BssT1I CCWWGG 3 cut(s) 345, 1306, 1810
Bst2UI CCWGG 2 cut(s) 1065, 1259
Bst4CI ACNGT 7 cut(s) 697, 1330, 1430, 1961, 1986, 2010, 2016
Bst6I CTCTTC 2 cut(s) 77, 1294
BstACI GRCGYC 1 cut(s) 133
BstBAI YACGTR 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 1269
BstDSI CCRYGG 2 cut(s) 345, 369
BstF5I GGATG 5 cut(s) 435, 458, 1111, 1177, 1741
BstFNI CGCG 2 cut(s) 52, 443
BstH2I RGCGCY 2 cut(s) 18, 136
BstHHI GCGC 2 cut(s) 17, 135
BstKTI GATC 6 cut(s) 90, 203, 263, 355, 1264, 1526
BstMBI GATC 6 cut(s) 87, 200, 260, 352, 1261, 1523
BstMCI CGRYCG 2 cut(s) 203, 249
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 2 cut(s) 1065, 1259
BstNSI RCATGY 1 cut(s) 763
BstPAI GACNNNNGTC 1 cut(s) 1905
BstSCI CCNGG 2 cut(s) 1063, 1257
BstSFI CTRYAG 3 cut(s) 1246, 1784, 2006
BstUI CGCG 2 cut(s) 52, 443
BstV1I GCAGC 5 cut(s) 4, 134, 282, 381, 895
BstV2I GAAGAC 1 cut(s) 1304
BstX2I RGATCY 3 cut(s) 87, 260, 352
BstXI CCANNNNNNTGG 4 cut(s) 1000, 1280, 1385, 1725
BstYI RGATCY 3 cut(s) 87, 260, 352
BstZI CGGCCG 1 cut(s) 246
Bsu36I CCTNAGG 1 cut(s) 1350
BsuI GTATCC 1 cut(s) 997
BsuRI GGCC 6 cut(s) 7, 110, 248, 344, 368, 1717
BtgI CCRYGG 2 cut(s) 345, 369
BtsCI GGATG 5 cut(s) 435, 458, 1111, 1177, 1741
BtsIMutI CAGTG 3 cut(s) 276, 1982, 2021
Cac8I GCNNGC 1 cut(s) 1269
CfoI GCGC 2 cut(s) 17, 135
Cfr10I RCCGGY 3 cut(s) 253, 340, 364
Cfr13I GGNCC 7 cut(s) 5, 251, 306, 716, 807, 1354, 1715
CpoI CGGWCCG 1 cut(s) 251
CseI GACGC 2 cut(s) 41, 147
Csp6I GTAC 3 cut(s) 478, 1346, 1805
CspAI ACCGGT 1 cut(s) 253
CspI CGGWCCG 1 cut(s) 251
CviAII CATG 7 cut(s) 346, 472, 520, 760, 1343, 1455, 1725
CviQI GTAC 3 cut(s) 478, 1346, 1805
DinI GGCGCC 1 cut(s) 134
DpnI GATC 6 cut(s) 89, 202, 262, 354, 1263, 1525
DpnII GATC 6 cut(s) 87, 200, 260, 352, 1261, 1523
DraI TTTAAA 3 cut(s) 1686, 1974, 1999
DriI GACNNNNNGTC 1 cut(s) 428
EaeI YGGCCR 3 cut(s) 246, 342, 366
EagI CGGCCG 1 cut(s) 246
Eam1104I CTCTTC 2 cut(s) 77, 1294
Eam1105I GACNNNNNGTC 1 cut(s) 428
EarI CTCTTC 2 cut(s) 77, 1294
EciI GGCGGA 1 cut(s) 399
Ecl136II GAGCTC 1 cut(s) 208
EclXI CGGCCG 1 cut(s) 246
Eco130I CCWWGG 3 cut(s) 345, 1306, 1810
Eco24I GRGCYC 2 cut(s) 210, 1099
Eco31I GGTCTC 2 cut(s) 383, 2070
Eco47I GGWCC 5 cut(s) 251, 306, 716, 807, 1354
Eco47III AGCGCT 1 cut(s) 16
Eco52I CGGCCG 1 cut(s) 246
Eco53kI GAGCTC 1 cut(s) 208
Eco81I CCTNAGG 1 cut(s) 1350
Eco88I CYCGRG 1 cut(s) 1202
EcoICRI GAGCTC 1 cut(s) 208
EcoO109I RGGNCCY 1 cut(s) 1354
EcoRII CCWGG 2 cut(s) 1063, 1257
EcoT14I CCWWGG 3 cut(s) 345, 1306, 1810
EcoT22I ATGCAT 1 cut(s) 1673
EcoT38I GRGCYC 2 cut(s) 210, 1099
EgeI GGCGCC 1 cut(s) 134
EheI GGCGCC 1 cut(s) 134
ErhI CCWWGG 3 cut(s) 345, 1306, 1810
FaeI CATG 7 cut(s) 349, 475, 523, 763, 1346, 1458, 1728
FaqI GGGAC 3 cut(s) 319, 729, 1340
FatI CATG 7 cut(s) 345, 471, 519, 759, 1342, 1454, 1724
FauI CCCGC 1 cut(s) 367
FauNDI CATATG 1 cut(s) 1914
Fnu4HI GCNGC 7 cut(s) 18, 50, 123, 296, 395, 413, 909
FokI GGATG 5 cut(s) 422, 445, 1118, 1184, 1748
FriOI GRGCYC 2 cut(s) 210, 1099
Fsp4HI GCNGC 7 cut(s) 18, 50, 123, 296, 395, 413, 909
FspBI CTAG 6 cut(s) 420, 683, 863, 1268, 1469, 1565
GlaI GCGC 2 cut(s) 16, 134
GluI GCNGC 7 cut(s) 18, 50, 123, 296, 395, 413, 909
GsaI CCCAGC 2 cut(s) 467, 930
HaeII RGCGCY 2 cut(s) 18, 136
HaeIII GGCC 6 cut(s) 7, 110, 248, 344, 368, 1717
HapII CCGG 4 cut(s) 249, 254, 341, 365
HgaI GACGC 2 cut(s) 41, 147
HhaI GCGC 2 cut(s) 17, 135
Hin1I GRCGYC 1 cut(s) 133
Hin1II CATG 7 cut(s) 349, 475, 523, 763, 1346, 1458, 1728
Hin6I GCGC 2 cut(s) 15, 133
HinP1I GCGC 2 cut(s) 15, 133
HincII GTYRAC 3 cut(s) 1209, 1583, 1910
HindII GTYRAC 3 cut(s) 1209, 1583, 1910
HindIII AAGCTT 2 cut(s) 1190, 1944
HinfI GANTC 9 cut(s) 274, 314, 452, 565, 849, 1391, 1400, 1442, 1901
HpaII CCGG 4 cut(s) 249, 254, 341, 365
HphI GGTGA 7 cut(s) 424, 447, 515, 998, 1336, 1400, 1868
Hpy166II GTNNAC 7 cut(s) 56, 480, 1209, 1583, 1807, 1850, 1910
Hpy188III TCNNGA 6 cut(s) 833, 1100, 1130, 1316, 1469, 1521
Hpy8I GTNNAC 7 cut(s) 56, 480, 1209, 1583, 1807, 1850, 1910
Hpy99I CGWCG 2 cut(s) 163, 235
HpyAV CCTTC 4 cut(s) 613, 798, 1009, 1107
HpyCH4III ACNGT 7 cut(s) 697, 1330, 1430, 1961, 1986, 2010, 2016
HpyCH4IV ACGT 1 cut(s) 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpySE526I ACGT 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 133
Hsp92II CATG 7 cut(s) 349, 475, 523, 763, 1346, 1458, 1728
HspAI GCGC 2 cut(s) 15, 133
KasI GGCGCC 1 cut(s) 132
Kzo9I GATC 6 cut(s) 87, 200, 260, 352, 1261, 1523
LguI GCTCTTC 1 cut(s) 1294
LmnI GCTCC 6 cut(s) 12, 205, 226, 292, 823, 1478
Lsp1109I GCAGC 5 cut(s) 4, 134, 282, 381, 895
LweI GCATC 3 cut(s) 225, 1096, 1775
MaeI CTAG 6 cut(s) 420, 683, 863, 1268, 1469, 1565
MaeII ACGT 1 cut(s) 128
MalI GATC 6 cut(s) 89, 202, 262, 354, 1263, 1525
MbiI CCGCTC 1 cut(s) 489
MboI GATC 6 cut(s) 87, 200, 260, 352, 1261, 1523
MboII GAAGA 4 cut(s) 94, 1145, 1281, 1304
MfeI CAATTG 2 cut(s) 498, 1698
MflI RGATCY 3 cut(s) 87, 260, 352
MhlI GDGCHC 2 cut(s) 210, 1099
MluI ACGCGT 1 cut(s) 441
Mly113I GGCGCC 1 cut(s) 133
MlyI GAGTC 6 cut(s) 268, 461, 574, 843, 1394, 1895
MmeI TCCRAC 1 cut(s) 1456
Mph1103I ATGCAT 1 cut(s) 1673
MspA1I CMGCKG 1 cut(s) 394
MspI CCGG 4 cut(s) 249, 254, 341, 365
MspR9I CCNGG 2 cut(s) 1065, 1259
MunI CAATTG 2 cut(s) 498, 1698
Mva1269I GAATGC 1 cut(s) 828
MvaI CCWGG 2 cut(s) 1065, 1259
MvnI CGCG 2 cut(s) 52, 443
MwoI GCNNNNNNNGC 1 cut(s) 235
NarI GGCGCC 1 cut(s) 133
NcoI CCATGG 1 cut(s) 345
NdeI CATATG 1 cut(s) 1914
NdeII GATC 6 cut(s) 87, 200, 260, 352, 1261, 1523
NheI GCTAGC 1 cut(s) 1267
NlaIII CATG 7 cut(s) 349, 475, 523, 763, 1346, 1458, 1728
NlaIV GGNNCC 8 cut(s) 6, 89, 134, 228, 307, 717, 1356, 1716
NmeAIII GCCGAG 2 cut(s) 33, 224
NmuCI GTSAC 7 cut(s) 271, 430, 453, 586, 1043, 1324, 1651
NsiI ATGCAT 1 cut(s) 1673
NspI RCATGY 1 cut(s) 763
PciSI GCTCTTC 1 cut(s) 1294
PctI GAATGC 1 cut(s) 828
PfeI GAWTC 3 cut(s) 314, 1391, 1442
PflMI CCANNNNNTGG 2 cut(s) 445, 1576
PfoI TCCNGGA 1 cut(s) 1257
PinAI ACCGGT 1 cut(s) 253
PkrI GCNGC 7 cut(s) 19, 51, 124, 297, 396, 414, 910
Ple19I CGATCG 1 cut(s) 203
PleI GAGTC 6 cut(s) 268, 460, 573, 843, 1394, 1895
PluTI GGCGCC 1 cut(s) 136
PpsI GAGTC 6 cut(s) 268, 460, 573, 843, 1394, 1895
Ppu21I YACGTR 1 cut(s) 129
PpuMI RGGWCCY 1 cut(s) 1354
PshAI GACNNNNGTC 1 cut(s) 1905
PshBI ATTAAT 1 cut(s) 1215
Psp124BI GAGCTC 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 1354
Psp6I CCWGG 2 cut(s) 1063, 1257
PspFI CCCAGC 2 cut(s) 463, 926
PspGI CCWGG 2 cut(s) 1063, 1257
PspN4I GGNNCC 8 cut(s) 6, 89, 134, 228, 307, 717, 1356, 1716
PspPI GGNCC 7 cut(s) 5, 251, 306, 716, 807, 1354, 1715
PspPPI RGGWCCY 1 cut(s) 1354
PstI CTGCAG 1 cut(s) 1788
PsuI RGATCY 3 cut(s) 87, 260, 352
PvuI CGATCG 1 cut(s) 203
PvuII CAGCTG 1 cut(s) 394
RsaI GTAC 3 cut(s) 479, 1347, 1806
RsaNI GTAC 3 cut(s) 478, 1346, 1805
Rsr2I CGGWCCG 1 cut(s) 251
RsrII CGGWCCG 1 cut(s) 251
SacI GAGCTC 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 1294
SatI GCNGC 7 cut(s) 18, 50, 123, 296, 395, 413, 909
Sau3AI GATC 6 cut(s) 87, 200, 260, 352, 1261, 1523
Sau96I GGNCC 7 cut(s) 5, 251, 306, 716, 807, 1354, 1715
SchI GAGTC 6 cut(s) 268, 461, 574, 843, 1394, 1895
ScrFI CCNGG 2 cut(s) 1065, 1259
SduI GDGCHC 2 cut(s) 210, 1099
SfaNI GCATC 3 cut(s) 225, 1096, 1775
SfcI CTRYAG 3 cut(s) 1246, 1784, 2006
SfoI GGCGCC 1 cut(s) 134
SinI GGWCC 5 cut(s) 251, 306, 716, 807, 1354
SmlI CTYRAG 2 cut(s) 216, 1903
SmoI CTYRAG 2 cut(s) 216, 1903
SsiI CCGC 7 cut(s) 47, 50, 326, 374, 410, 413, 487
SspDI GGCGCC 1 cut(s) 132
SspMI CTAG 6 cut(s) 420, 683, 863, 1268, 1469, 1565
SstI GAGCTC 1 cut(s) 210
StyD4I CCNGG 2 cut(s) 1063, 1257
StyI CCWWGG 3 cut(s) 345, 1306, 1810
TaaI ACNGT 7 cut(s) 697, 1330, 1430, 1961, 1986, 2010, 2016
TaiI ACGT 1 cut(s) 131
TaqI TCGA 4 cut(s) 199, 233, 832, 1315
TauI GCSGC 2 cut(s) 52, 415
TfiI GAWTC 3 cut(s) 314, 1391, 1442
TscAI CASTG 3 cut(s) 276, 1989, 2021
TseFI GTSAC 7 cut(s) 271, 430, 453, 586, 1043, 1324, 1651
TseI GCWGC 5 cut(s) 17, 122, 295, 394, 908
Tsp45I GTSAC 7 cut(s) 271, 430, 453, 586, 1043, 1324, 1651
TspDTI ATGAA 9 cut(s) 84, 129, 536, 1028, 1608, 1757, 1790, 1946, 1954
TspRI CASTG 3 cut(s) 276, 1989, 2021
Van91I CCANNNNNTGG 2 cut(s) 445, 1576
VpaK11BI GGWCC 5 cut(s) 251, 306, 716, 807, 1354
VspI ATTAAT 1 cut(s) 1215
XapI RAATTY 3 cut(s) 1688, 1750, 1933
XbaI TCTAGA 1 cut(s) 1468
XceI RCATGY 1 cut(s) 763
XcmI CCANNNNNNNNNTGG 1 cut(s) 442
XspI CTAG 6 cut(s) 420, 683, 863, 1268, 1469, 1565
Zsp2I ATGCAT 1 cut(s) 1673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.