OTU domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G62940 AT3G62940 AT3G62940 AT3G62940 AT3G62940 |
| fragaria_vesca | FvH4_2g14201 FvH4_2g14201 FvH4_2g14201 |
| malus_domestica | MD03G1278200.v1.1 MD11G1300200.v1.1 |
| prunus_persica | Prupe.2G090200_v2.0.a1 Prupe.2G090200_v2.0.a1 Prupe.8G254400_v2.0.a1 Prupe.8G254400_v2.0.a1 Prupe.8G254400_v2.0.a1 |
| pyrus_communis | pycom03g22160 pycom11g26360 |
| rosa_chinensis | RchiOBHm_Chr3g0496291 RchiOBHm_Chr5g0001231 RchiOBHm_Chr5g0082561 RchiOBHm_Chr6g0247511 RchiOBHm_Chr6g0292881 |
| rosa_laevigata | RLG00000011983 RLG00000015114 RLG00000015120 |
| rosa_multiflora | Rmu_sc0000147.1_g000079 Rmu_sc0000391.1_g000019 Rmu_sc0000391.1_g000020 Rmu_sc0000639.1_g000016 Rmu_ssc0000454.1_g000017 |
| rosa_roxburghii | Rroxscaffold_4G00287890 Rroxscaffold_6G00416780 Rroxscaffold_7G00174620 Rroxscaffold_7G00186560 |
| rosa_rugosa | Rorug06G0230500 |
| rosa_samantha | Rh3CG361400 Rh6AG343800 Rh6BG351000 Rh6CG358000 Rh6DG343900 |
| rosa_wichuraiana | Rw6G029990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 123 |
| AccI | GTMKAC | 1 cut(s) | 39 |
| AcsI | RAATTY | 1 cut(s) | 294 |
| AgsI | TTSAA | 3 cut(s) | 246, 299, 338 |
| AluBI | AGCT | 3 cut(s) | 64, 194, 361 |
| AluI | AGCT | 3 cut(s) | 64, 194, 361 |
| ApeKI | GCWGC | 1 cut(s) | 146 |
| ApoI | RAATTY | 1 cut(s) | 294 |
| AspLEI | GCGC | 1 cut(s) | 124 |
| AsuHPI | GGTGA | 1 cut(s) | 353 |
| BanII | GRGCYC | 2 cut(s) | 268, 369 |
| BbvI | GCAGC | 1 cut(s) | 133 |
| BccI | CCATC | 1 cut(s) | 395 |
| BceAI | ACGGC | 1 cut(s) | 174 |
| BfaI | CTAG | 4 cut(s) | 47, 234, 350, 427 |
| BisI | GCNGC | 1 cut(s) | 147 |
| BlsI | GCNGC | 1 cut(s) | 148 |
| BmsI | GCATC | 2 cut(s) | 109, 265 |
| Bpu10I | CCTNAGC | 1 cut(s) | 267 |
| BpuEI | CTTGAG | 2 cut(s) | 239, 383 |
| BsaJI | CCNNGG | 1 cut(s) | 370 |
| Bse3DI | GCAATG | 1 cut(s) | 406 |
| BseDI | CCNNGG | 1 cut(s) | 370 |
| BseGI | GGATG | 1 cut(s) | 280 |
| BseMI | GCAATG | 1 cut(s) | 406 |
| BseMII | CTCAG | 1 cut(s) | 281 |
| BseXI | GCAGC | 1 cut(s) | 133 |
| BsgI | GTGCAG | 1 cut(s) | 9 |
| Bsp1286I | GDGCHC | 2 cut(s) | 268, 369 |
| BspCNI | CTCAG | 1 cut(s) | 280 |
| BspQI | GCTCTTC | 1 cut(s) | 297 |
| BsrDI | GCAATG | 1 cut(s) | 406 |
| BssECI | CCNNGG | 1 cut(s) | 370 |
| BssT1I | CCWWGG | 1 cut(s) | 370 |
| Bst4CI | ACNGT | 1 cut(s) | 94 |
| Bst6I | CTCTTC | 1 cut(s) | 297 |
| BstDEI | CTNAG | 3 cut(s) | 60, 174, 267 |
| BstF5I | GGATG | 1 cut(s) | 280 |
| BstHHI | GCGC | 1 cut(s) | 124 |
| BstV1I | GCAGC | 1 cut(s) | 133 |
| BtsCI | GGATG | 1 cut(s) | 280 |
| CfoI | GCGC | 1 cut(s) | 124 |
| CviJI | RGCY | 9 cut(s) | 64, 161, 194, 213, 232, 266, 361, 367, 375 |
| CviKI_1 | RGCY | 9 cut(s) | 64, 161, 194, 213, 232, 266, 361, 367, 375 |
| DdeI | CTNAG | 3 cut(s) | 60, 174, 267 |
| Eam1104I | CTCTTC | 1 cut(s) | 297 |
| EarI | CTCTTC | 1 cut(s) | 297 |
| Eco130I | CCWWGG | 1 cut(s) | 370 |
| Eco24I | GRGCYC | 2 cut(s) | 268, 369 |
| EcoRI | GAATTC | 1 cut(s) | 294 |
| EcoT14I | CCWWGG | 1 cut(s) | 370 |
| EcoT38I | GRGCYC | 2 cut(s) | 268, 369 |
| ErhI | CCWWGG | 1 cut(s) | 370 |
| FaiI | YATR | 4 cut(s) | 104, 191, 208, 387 |
| FblI | GTMKAC | 1 cut(s) | 39 |
| Fnu4HI | GCNGC | 1 cut(s) | 147 |
| FokI | GGATG | 1 cut(s) | 287 |
| FriOI | GRGCYC | 2 cut(s) | 268, 369 |
| Fsp4HI | GCNGC | 1 cut(s) | 147 |
| FspBI | CTAG | 4 cut(s) | 47, 234, 350, 427 |
| FspI | TGCGCA | 1 cut(s) | 123 |
| GlaI | GCGC | 1 cut(s) | 123 |
| GluI | GCNGC | 1 cut(s) | 147 |
| HhaI | GCGC | 1 cut(s) | 124 |
| Hin6I | GCGC | 1 cut(s) | 122 |
| HinP1I | GCGC | 1 cut(s) | 122 |
| HindIII | AAGCTT | 2 cut(s) | 62, 359 |
| HphI | GGTGA | 1 cut(s) | 353 |
| Hpy166II | GTNNAC | 1 cut(s) | 40 |
| Hpy188III | TCNNGA | 4 cut(s) | 77, 269, 299, 398 |
| Hpy8I | GTNNAC | 1 cut(s) | 40 |
| HpyAV | CCTTC | 2 cut(s) | 276, 332 |
| HpyCH4III | ACNGT | 1 cut(s) | 94 |
| HpyCH4IV | ACGT | 1 cut(s) | 84 |
| HpyCH4V | TGCA | 2 cut(s) | 26, 278 |
| HpyF3I | CTNAG | 3 cut(s) | 60, 174, 267 |
| HpySE526I | ACGT | 1 cut(s) | 84 |
| HspAI | GCGC | 1 cut(s) | 122 |
| LguI | GCTCTTC | 1 cut(s) | 297 |
| LpnPI | CCDG | 5 cut(s) | 14, 147, 180, 254, 411 |
| Lsp1109I | GCAGC | 1 cut(s) | 133 |
| LweI | GCATC | 2 cut(s) | 109, 265 |
| MaeI | CTAG | 4 cut(s) | 47, 234, 350, 427 |
| MaeII | ACGT | 1 cut(s) | 84 |
| MaeIII | GTNAC | 1 cut(s) | 94 |
| MboII | GAAGA | 2 cut(s) | 16, 314 |
| MhlI | GDGCHC | 2 cut(s) | 268, 369 |
| MluCI | AATT | 3 cut(s) | 125, 294, 381 |
| MnlI | CCTC | 2 cut(s) | 265, 422 |
| MseI | TTAA | 2 cut(s) | 69, 87 |
| NsbI | TGCGCA | 1 cut(s) | 123 |
| PciSI | GCTCTTC | 1 cut(s) | 297 |
| PkrI | GCNGC | 1 cut(s) | 148 |
| SapI | GCTCTTC | 1 cut(s) | 297 |
| SaqAI | TTAA | 2 cut(s) | 69, 87 |
| SatI | GCNGC | 1 cut(s) | 147 |
| SduI | GDGCHC | 2 cut(s) | 268, 369 |
| SetI | ASST | 5 cut(s) | 66, 87, 196, 343, 363 |
| SfaNI | GCATC | 2 cut(s) | 109, 265 |
| SmlI | CTYRAG | 2 cut(s) | 218, 362 |
| SmoI | CTYRAG | 2 cut(s) | 218, 362 |
| Sse9I | AATT | 3 cut(s) | 125, 294, 381 |
| SspMI | CTAG | 4 cut(s) | 47, 234, 350, 427 |
| StyI | CCWWGG | 1 cut(s) | 370 |
| TaaI | ACNGT | 1 cut(s) | 94 |
| TaiI | ACGT | 1 cut(s) | 87 |
| TaqI | TCGA | 1 cut(s) | 153 |
| TasI | AATT | 3 cut(s) | 125, 294, 381 |
| Tru1I | TTAA | 2 cut(s) | 69, 87 |
| Tru9I | TTAA | 2 cut(s) | 69, 87 |
| TseI | GCWGC | 1 cut(s) | 146 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| XapI | RAATTY | 1 cut(s) | 294 |
| XmiI | GTMKAC | 1 cut(s) | 39 |
| XspI | CTAG | 4 cut(s) | 47, 234, 350, 427 |