Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000391.1

Orthogroup ID

OG0002523

Physical Location & Seq

Genomic Coordinates Reverse (-)

69631 .. 70311

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000391.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atggggtcgaggagggctggagatccaccacaatattcgtcaacaccgctgtgtccacctgacccaaataaattgaggatgaagctccaaatcgagatagaagagacagctgcgagatgtcatgaacttcggaaatctatggcatcaatggcggcagaaccggttgtatttcagtccgagatattacacgagttgaggcaatttcggttggagcaaacagctcagttgaggccgccgcctccaccaccacctccggcaacgacggattcctaccactaccagcaccaacaagcaccacagtattcaccgactctactgcggaaactgcctccatttcctgttccgaacccccaacacacattgctacggctccaaaccttcgcttcagagctgcaacaacggttaaatcagtttttcttagtaagtgatactagcactagagtttctaatcagttcaattttctgaatgatgattgcaatggtgtgggttcagtggtgtttggtgctaaattaaaaggtattgatgagaagttaaatactgtgggggcagattgttctaataagatggttgaggtgattagtggggatattagagagtttaatgagcttaagagtgtgacctctggtgcaaatcctgtctcaataaagaaggggattgataaactgcacagacattggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

25.41

Weight (kDa)

8.68

Isoelectric Point (pI)

59.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62940 AT3G62940 AT3G62940 AT3G62940 AT3G62940
fragaria_vesca	FvH4_2g14201 FvH4_2g14201 FvH4_2g14201
malus_domestica	MD03G1278200.v1.1 MD11G1300200.v1.1
prunus_persica	Prupe.2G090200_v2.0.a1 Prupe.2G090200_v2.0.a1 Prupe.8G254400_v2.0.a1 Prupe.8G254400_v2.0.a1 Prupe.8G254400_v2.0.a1
pyrus_communis	pycom03g22160 pycom11g26360
rosa_chinensis	RchiOBHm_Chr3g0496291 RchiOBHm_Chr5g0001231 RchiOBHm_Chr5g0082561 RchiOBHm_Chr6g0247511 RchiOBHm_Chr6g0292881
rosa_laevigata	RLG00000011983 RLG00000015114 RLG00000015120
rosa_multiflora	Rmu_sc0000147.1_g000079 Rmu_sc0000391.1_g000019 Rmu_sc0000391.1_g000020 Rmu_sc0000639.1_g000016 Rmu_ssc0000454.1_g000017
rosa_roxburghii	Rroxscaffold_4G00287890 Rroxscaffold_6G00416780 Rroxscaffold_7G00174620 Rroxscaffold_7G00186560
rosa_rugosa	Rorug06G0230500
rosa_samantha	Rh3CG361400 Rh6AG343800 Rh6BG351000 Rh6CG358000 Rh6DG343900
rosa_wichuraiana	Rw6G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	47, 152, 233, 236, 319
AclWI	GGATC	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	369
AflII	CTTAAG	1 cut(s)	608
AgeI	ACCGGT	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	457
AleI	CACNNNNGTG	1 cut(s)	49
AluBI	AGCT	5 cut(s)	85, 110, 221, 391, 607
AluI	AGCT	5 cut(s)	85, 110, 221, 391, 607
Alw26I	GTCTC	2 cut(s)	98, 643
AlwI	GGATC	1 cut(s)	17
AoxI	GGCC	1 cut(s)	230
ApeKI	GCWGC	2 cut(s)	110, 391
AsiGI	ACCGGT	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	297, 586
BauI	CACGAG	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	97, 378
BccI	CCATC	1 cut(s)	559
BceAI	ACGGC	1 cut(s)	383
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BcoDI	GTCTC	2 cut(s)	98, 643
BfaI	CTAG	2 cut(s)	432, 438
BfrI	CTTAAG	1 cut(s)	608
BisI	GCNGC	5 cut(s)	111, 153, 233, 236, 392
BlsI	GCNGC	5 cut(s)	112, 154, 234, 237, 393
BmiI	GGNNCC	1 cut(s)	371
BmsI	GCATC	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	160
Bse118I	RCCGGY	1 cut(s)	160
Bse3DI	GCAATG	2 cut(s)	359, 484
BseGI	GGATG	1 cut(s)	84
BseMI	GCAATG	2 cut(s)	359, 484
BseMII	CTCAG	1 cut(s)	236
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	2 cut(s)	97, 378
BsgI	GTGCAG	1 cut(s)	650
BshFI	GGCC	1 cut(s)	232
BshTI	ACCGGT	1 cut(s)	160
BsiSI	CCGG	2 cut(s)	161, 254
BsmAI	GTCTC	2 cut(s)	98, 643
BsnI	GGCC	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	5 cut(s)	47, 152, 233, 236, 319
BspANI	GGCC	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	235
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	371
BspPI	GGATC	1 cut(s)	17
BspTI	CTTAAG	1 cut(s)	608
BsrDI	GCAATG	2 cut(s)	359, 484
BsrFI	RCCGGY	1 cut(s)	160
BssAI	RCCGGY	1 cut(s)	160
BssMI	GATC	1 cut(s)	22
BssSI	CACGAG	1 cut(s)	188
Bst2BI	CACGAG	1 cut(s)	188
Bst4CI	ACNGT	3 cut(s)	300, 402, 541
Bst6I	CTCTTC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	608
BstDEI	CTNAG	2 cut(s)	222, 418
BstF5I	GGATG	1 cut(s)	84
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	2 cut(s)	98, 643
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 325
BstV1I	GCAGC	2 cut(s)	97, 378
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	498
CciI	TCATGA	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	160
CspAI	ACCGGT	1 cut(s)	160
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	8 cut(s)	17, 85, 110, 221, 232, 370, 391, 607
CviKI_1	RGCY	8 cut(s)	17, 85, 110, 221, 232, 370, 391, 607
DdeI	CTNAG	2 cut(s)	222, 418
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	369
FaeI	CATG	1 cut(s)	125
FaiI	YATR	2 cut(s)	123, 140
FatI	CATG	1 cut(s)	121
Fnu4HI	GCNGC	5 cut(s)	111, 153, 233, 236, 392
FokI	GGATG	1 cut(s)	91
Fsp4HI	GCNGC	5 cut(s)	111, 153, 233, 236, 392
FspBI	CTAG	2 cut(s)	432, 438
GluI	GCNGC	5 cut(s)	111, 153, 233, 236, 392
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	232
HapII	CCGG	2 cut(s)	161, 254
Hin1II	CATG	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	2 cut(s)	266, 310
HpaII	CCGG	2 cut(s)	161, 254
HphI	GGTGA	2 cut(s)	297, 586
Hpy166II	GTNNAC	2 cut(s)	42, 56
Hpy188I	TCNGA	5 cut(s)	132, 178, 345, 388, 465
Hpy188III	TCNNGA	2 cut(s)	94, 122
Hpy8I	GTNNAC	2 cut(s)	42, 56
Hpy99I	CGWCG	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	388, 643
HpyCH4III	ACNGT	3 cut(s)	300, 402, 541
HpyCH4V	TGCA	4 cut(s)	394, 477, 629, 667
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 325
HpyF3I	CTNAG	2 cut(s)	222, 418
Hsp92II	CATG	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	3 cut(s)	90, 211, 375
LpnPI	CCDG	8 cut(s)	3, 72, 174, 267, 293, 351, 609, 648
Lsp1109I	GCAGC	2 cut(s)	97, 378
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	2 cut(s)	432, 438
MaeIII	GTNAC	1 cut(s)	616
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	1 cut(s)	113
MflI	RGATCY	1 cut(s)	22
MluCI	AATT	4 cut(s)	71, 200, 457, 509
MlyI	GAGTC	1 cut(s)	304
MmeI	TCCRAC	1 cut(s)	189
MseI	TTAA	5 cut(s)	404, 512, 533, 600, 609
MslI	CAYNNNNRTG	1 cut(s)	49
MspA1I	CMGCKG	2 cut(s)	49, 110
MspCI	CTTAAG	1 cut(s)	608
MspI	CCGG	2 cut(s)	161, 254
MwoI	GCNNNNNNNGC	2 cut(s)	149, 325
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	125
NlaIV	GGNNCC	1 cut(s)	371
NmuCI	GTSAC	1 cut(s)	616
OliI	CACNNNNGTG	1 cut(s)	49
PagI	TCATGA	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	266
PinAI	ACCGGT	1 cut(s)	160
PkrI	GCNGC	5 cut(s)	112, 154, 234, 237, 393
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	49
SaqAI	TTAA	5 cut(s)	404, 512, 533, 600, 609
SatI	GCNGC	5 cut(s)	111, 153, 233, 236, 392
Sau3AI	GATC	1 cut(s)	22
SchI	GAGTC	1 cut(s)	304
SfaNI	GCATC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
Sse9I	AATT	4 cut(s)	71, 200, 457, 509
SsiI	CCGC	5 cut(s)	47, 152, 233, 236, 319
SspI	AATATT	1 cut(s)	35
SspMI	CTAG	2 cut(s)	432, 438
TaaI	ACNGT	3 cut(s)	300, 402, 541
TaqI	TCGA	2 cut(s)	8, 93
TasI	AATT	4 cut(s)	71, 200, 457, 509
TauI	GCSGC	3 cut(s)	155, 235, 238
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	5 cut(s)	404, 512, 533, 600, 609
Tru9I	TTAA	5 cut(s)	404, 512, 533, 600, 609
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	2 cut(s)	110, 391
Tsp45I	GTSAC	1 cut(s)	616
TspDTI	ATGAA	2 cut(s)	95, 138
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	498
Vha464I	CTTAAG	1 cut(s)	608
XspI	CTAG	2 cut(s)	432, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.