RchiOBHm_Chr5g0001231

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002523
Physical Location & Seq
Reverse (-)
654804 .. 656010
1207 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28268

Sequence Viewer

Length: 1128 bp
ATGTTGCTATCATATGGGATGTGTAATGCAGGAAGGACCAGTATTGCTCCTATGAGCATTCGAGACAAAGGTGGAGGACTCGCTTCTAAACTAGGAAACAAGTCTAGGCTTGTTAGGGGTTGTGATGATGTTAAAGCTGCTACATCTATGTCTGCTGGGAATGATGTGCAATTTGGAACAATGCTTGTTGCTGCTATCAACAAGGCTAATGGAGGTGAAGTGAGTAATTTGGATGCTTTAATGAAGGTCACAGCTGGTGTTCCTGTAAGCAGTCACTTTGAGAATGTAAAGCCTGGCAAGAGTTCAAAGAAAAAAGTGATAGGGGCTCAGGAGGATGCAAGAAGGAAGCAGAGAAGTAAAGAAGAACAGAGCAAGTCAATAAGCAATCAAATGGTTGAGGATGAGAAACCAGAAAAAAAAAAAAAGCTTGAACCCCTCGGGTTGACAATTAATGAGACAAAAGCTAATGGTCATTGTCTCTATAGTGCTATCCAGGATCAGCTAGCCCACCTTTTTGGAGGCTCTTCACTTTACTCATACCAAGGTCTTCGAGAAATGGTGACTGTGTATATGTGCCATGTACCTGAGGTCCCATCTTTCTTGCCAAACAACCAAGTAGATGGTGATTATGAGGACTCACTTGTAGAAAGGATTGAGAATTACTGTAAGGAAGTGGAATCATCAGAAGCATGGGGAGGACATCTAGAGGTTGGAGCTTTAACTCATTGCCTTAAAAAGTGTCTCAGTATATGCTCAGGACCATTCCCTGATATAGATAATGTGAATGGTATCATTGGACCAGCCCATTATATGGGTCAACAGCTTGATGAAACTACAAATAAATGGAGTTGGTGCAAACAAGAGCTCAGAGAAAAATATATGTTTGTGACTATTGACAACTTATGCATTGCTTTAGTTTTAAAATGTTGTCCAATTGGTATAGTTGAGGGGCCAGAGACGTGGTTTTTGGATGTGATGAATGGGAATTTGGACAAAATGGCATCTGAGATGAATAAACTGCAGCTGTATATTGGTGTGGTACACCAAGGAATTAAGCTATTTTCTGTGCAAGGCTTGGGCAGTTTACTGGGTGATAGTATGAGGAACTTTTATCTTGTCCTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

375

Amino Acids

41.13

Weight (kDa)

6.47

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 155 - 251 8.1e-14 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 811
AclWI GGATC 1 cut(s) 504
AcsI RAATTY 1 cut(s) 985
AfaI GTAC 2 cut(s) 582, 1041
AfiI CCNNNNNNNGG 1 cut(s) 811
AgsI TTSAA 2 cut(s) 306, 431
AjiI CACGTC 1 cut(s) 960
AjnI CCWGG 2 cut(s) 292, 492
AjuI GAANNNNNNNTTGG 2 cut(s) 971, 1003
Alw21I GWGCWC 1 cut(s) 867
Alw26I GTCTC 5 cut(s) 57, 449, 482, 746, 950
AlwI GGATC 1 cut(s) 504
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 1 cut(s) 950
ApeKI GCWGC 3 cut(s) 137, 191, 1021
ApoI RAATTY 1 cut(s) 985
ArsI GACNNNNNNTTYG 2 cut(s) 949, 981
AseI ATTAAT 1 cut(s) 450
AspS9I GGNCC 5 cut(s) 36, 589, 758, 797, 950
AsuHPI GGTGA 4 cut(s) 227, 571, 635, 1103
AsuNHI GCTAGC 1 cut(s) 502
AvaI CYCGRG 1 cut(s) 437
AvaII GGWCC 4 cut(s) 36, 589, 758, 797
AxyI CCTNAGG 1 cut(s) 585
BanII GRGCYC 2 cut(s) 328, 867
BbsI GAAGAC 1 cut(s) 539
Bbv12I GWGCWC 1 cut(s) 867
BbvI GCAGC 3 cut(s) 124, 178, 1033
BccI CCATC 2 cut(s) 601, 614
BciT130I CCWGG 2 cut(s) 294, 494
BcoDI GTCTC 5 cut(s) 57, 449, 482, 746, 950
BfaI CTAG 4 cut(s) 92, 105, 503, 704
BfmI CTRYAG 2 cut(s) 481, 1019
BisI GCNGC 3 cut(s) 138, 192, 1022
BlsI GCNGC 3 cut(s) 139, 193, 1023
Bme1390I CCNGG 2 cut(s) 294, 494
Bme18I GGWCC 4 cut(s) 36, 589, 758, 797
BmeT110I CYCGRG 1 cut(s) 437
BmgBI CACGTC 1 cut(s) 960
BmgT120I GGNCC 5 cut(s) 36, 589, 758, 797, 950
BmiI GGNNCC 2 cut(s) 591, 951
BmrFI CCNGG 2 cut(s) 294, 494
BmrI ACTGGG 1 cut(s) 1097
BmsI GCATC 3 cut(s) 223, 325, 1010
BmtI GCTAGC 1 cut(s) 506
BmuI ACTGGG 1 cut(s) 1097
BpiI GAAGAC 1 cut(s) 539
Bpu10I CCTNAGC 2 cut(s) 327, 754
BsaJI CCNNGG 3 cut(s) 436, 541, 1045
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 811
Bse1I ACTGG 2 cut(s) 39, 1092
Bse21I CCTNAGG 1 cut(s) 585
Bse3DI GCAATG 2 cut(s) 724, 906
BseBI CCWGG 2 cut(s) 294, 494
BseDI CCNNGG 3 cut(s) 436, 541, 1045
BseGI GGATG 5 cut(s) 24, 238, 340, 406, 976
BseLI CCNNNNNNNGG 1 cut(s) 811
BseMI GCAATG 2 cut(s) 724, 906
BseMII CTCAG 6 cut(s) 341, 576, 757, 768, 880, 996
BseNI ACTGG 2 cut(s) 39, 1092
BseXI GCAGC 3 cut(s) 124, 178, 1033
BseYI CCCAGC 1 cut(s) 155
BshFI GGCC 1 cut(s) 952
BsiHKAI GWGCWC 1 cut(s) 867
BsiHKCI CYCGRG 1 cut(s) 437
BslFI GGGAC 1 cut(s) 575
BslI CCNNNNNNNGG 1 cut(s) 811
BsmAI GTCTC 5 cut(s) 57, 449, 482, 746, 950
BsmBI CGTCTC 1 cut(s) 950
BsmFI GGGAC 1 cut(s) 575
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 1 cut(s) 952
BsoBI CYCGRG 1 cut(s) 437
Bsp1286I GDGCHC 2 cut(s) 328, 867
Bsp143I GATC 1 cut(s) 496
BspANI GGCC 1 cut(s) 952
BspCNI CTCAG 6 cut(s) 340, 577, 756, 767, 879, 997
BspLI GGNNCC 2 cut(s) 591, 951
BspMAI CTGCAG 1 cut(s) 1023
BspOI GCTAGC 1 cut(s) 506
BspPI GGATC 1 cut(s) 504
BspQI GCTCTTC 1 cut(s) 529
BsrDI GCAATG 2 cut(s) 724, 906
BsrI ACTGG 2 cut(s) 39, 1092
BssECI CCNNGG 3 cut(s) 436, 541, 1045
BssMI GATC 1 cut(s) 496
BssT1I CCWWGG 2 cut(s) 541, 1045
Bst2UI CCWGG 2 cut(s) 294, 494
Bst4CI ACNGT 2 cut(s) 565, 665
Bst6I CTCTTC 1 cut(s) 529
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 6 cut(s) 327, 585, 743, 754, 866, 1005
BstF5I GGATG 5 cut(s) 24, 238, 340, 406, 976
BstKTI GATC 1 cut(s) 499
BstMAI GTCTC 5 cut(s) 57, 449, 482, 746, 950
BstMBI GATC 1 cut(s) 496
BstNI CCWGG 2 cut(s) 294, 494
BstSCI CCNGG 2 cut(s) 292, 492
BstSFI CTRYAG 2 cut(s) 481, 1019
BstV1I GCAGC 3 cut(s) 124, 178, 1033
BstV2I GAAGAC 1 cut(s) 539
BstXI CCANNNNNNTGG 3 cut(s) 515, 620, 960
Bsu36I CCTNAGG 1 cut(s) 585
BsuRI GGCC 1 cut(s) 952
BtrI CACGTC 1 cut(s) 960
BtsCI GGATG 5 cut(s) 24, 238, 340, 406, 976
Cac8I GCNNGC 1 cut(s) 504
Cfr13I GGNCC 5 cut(s) 36, 589, 758, 797, 950
Csp6I GTAC 2 cut(s) 581, 1040
CviAII CATG 2 cut(s) 578, 690
CviQI GTAC 2 cut(s) 581, 1040
DdeI CTNAG 6 cut(s) 327, 585, 743, 754, 866, 1005
DpnI GATC 1 cut(s) 498
DpnII GATC 1 cut(s) 496
DraI TTTAAA 1 cut(s) 921
Eam1104I CTCTTC 1 cut(s) 529
EarI CTCTTC 1 cut(s) 529
Ecl136II GAGCTC 1 cut(s) 865
Eco130I CCWWGG 2 cut(s) 541, 1045
Eco24I GRGCYC 2 cut(s) 328, 867
Eco47I GGWCC 4 cut(s) 36, 589, 758, 797
Eco53kI GAGCTC 1 cut(s) 865
Eco81I CCTNAGG 1 cut(s) 585
Eco88I CYCGRG 1 cut(s) 437
EcoICRI GAGCTC 1 cut(s) 865
EcoO109I RGGNCCY 1 cut(s) 589
EcoRII CCWGG 2 cut(s) 292, 492
EcoT14I CCWWGG 2 cut(s) 541, 1045
EcoT22I ATGCAT 1 cut(s) 908
EcoT38I GRGCYC 2 cut(s) 328, 867
ErhI CCWWGG 2 cut(s) 541, 1045
Esp3I CGTCTC 1 cut(s) 950
FaeI CATG 2 cut(s) 581, 693
FaqI GGGAC 1 cut(s) 575
FatI CATG 2 cut(s) 577, 689
FauNDI CATATG 1 cut(s) 13
Fnu4HI GCNGC 3 cut(s) 138, 192, 1022
FokI GGATG 5 cut(s) 31, 245, 347, 413, 983
FriOI GRGCYC 2 cut(s) 328, 867
Fsp4HI GCNGC 3 cut(s) 138, 192, 1022
FspBI CTAG 4 cut(s) 92, 105, 503, 704
GluI GCNGC 3 cut(s) 138, 192, 1022
GsaI CCCAGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 952
Hin1II CATG 2 cut(s) 581, 693
HincII GTYRAC 2 cut(s) 444, 818
HindII GTYRAC 2 cut(s) 444, 818
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 3 cut(s) 78, 635, 677
HphI GGTGA 4 cut(s) 227, 571, 635, 1103
Hpy166II GTNNAC 4 cut(s) 444, 818, 1042, 1085
Hpy188I TCNGA 3 cut(s) 685, 869, 1006
Hpy188III TCNNGA 5 cut(s) 62, 329, 551, 704, 756
Hpy8I GTNNAC 4 cut(s) 444, 818, 1042, 1085
HpyAV CCTTC 3 cut(s) 27, 238, 336
HpyCH4III ACNGT 2 cut(s) 565, 665
HpyCH4IV ACGT 1 cut(s) 959
HpyCH4V TGCA 7 cut(s) 29, 169, 338, 855, 906, 1021, 1069
HpyF3I CTNAG 6 cut(s) 327, 585, 743, 754, 866, 1005
HpySE526I ACGT 1 cut(s) 959
Hsp92II CATG 2 cut(s) 581, 693
Kzo9I GATC 1 cut(s) 496
LguI GCTCTTC 1 cut(s) 529
LmnI GCTCC 2 cut(s) 52, 713
Lsp1109I GCAGC 3 cut(s) 124, 178, 1033
LweI GCATC 3 cut(s) 223, 325, 1010
MaeI CTAG 4 cut(s) 92, 105, 503, 704
MaeII ACGT 1 cut(s) 959
MaeIII GTNAC 4 cut(s) 247, 272, 559, 886
MalI GATC 1 cut(s) 498
MboI GATC 1 cut(s) 496
MboII GAAGA 3 cut(s) 374, 516, 539
MfeI CAATTG 1 cut(s) 933
MhlI GDGCHC 2 cut(s) 328, 867
MluCI AATT 7 cut(s) 170, 226, 447, 658, 933, 985, 1050
MlyI GAGTC 2 cut(s) 72, 629
MmeI TCCRAC 1 cut(s) 691
Mph1103I ATGCAT 1 cut(s) 908
MseI TTAA 7 cut(s) 132, 239, 450, 719, 732, 920, 1053
MspA1I CMGCKG 2 cut(s) 254, 1024
MspR9I CCNGG 2 cut(s) 294, 494
MunI CAATTG 1 cut(s) 933
Mva1269I GAATGC 1 cut(s) 57
MvaI CCWGG 2 cut(s) 294, 494
NdeI CATATG 1 cut(s) 13
NdeII GATC 1 cut(s) 496
NheI GCTAGC 1 cut(s) 502
NlaIII CATG 2 cut(s) 581, 693
NlaIV GGNNCC 2 cut(s) 591, 951
NmuCI GTSAC 4 cut(s) 247, 272, 559, 886
NsiI ATGCAT 1 cut(s) 908
PciSI GCTCTTC 1 cut(s) 529
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 1 cut(s) 677
PflMI CCANNNNNTGG 1 cut(s) 811
PfoI TCCNGGA 1 cut(s) 492
PkrI GCNGC 3 cut(s) 139, 193, 1023
PleI GAGTC 2 cut(s) 72, 629
PpsI GAGTC 2 cut(s) 72, 629
PpuMI RGGWCCY 1 cut(s) 589
PshBI ATTAAT 1 cut(s) 450
Psp124BI GAGCTC 1 cut(s) 867
Psp5II RGGWCCY 1 cut(s) 589
Psp6I CCWGG 2 cut(s) 292, 492
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 2 cut(s) 292, 492
PspN4I GGNNCC 2 cut(s) 591, 951
PspPI GGNCC 5 cut(s) 36, 589, 758, 797, 950
PspPPI RGGWCCY 1 cut(s) 589
PstI CTGCAG 1 cut(s) 1023
PvuII CAGCTG 2 cut(s) 254, 1024
RsaI GTAC 2 cut(s) 582, 1041
RsaNI GTAC 2 cut(s) 581, 1040
SacI GAGCTC 1 cut(s) 867
SapI GCTCTTC 1 cut(s) 529
SaqAI TTAA 7 cut(s) 132, 239, 450, 719, 732, 920, 1053
SatI GCNGC 3 cut(s) 138, 192, 1022
Sau3AI GATC 1 cut(s) 496
Sau96I GGNCC 5 cut(s) 36, 589, 758, 797, 950
SchI GAGTC 2 cut(s) 72, 629
ScrFI CCNGG 2 cut(s) 294, 494
SduI GDGCHC 2 cut(s) 328, 867
SfaNI GCATC 3 cut(s) 223, 325, 1010
SfcI CTRYAG 2 cut(s) 481, 1019
SinI GGWCC 4 cut(s) 36, 589, 758, 797
Sse9I AATT 7 cut(s) 170, 226, 447, 658, 933, 985, 1050
SspMI CTAG 4 cut(s) 92, 105, 503, 704
SstI GAGCTC 1 cut(s) 867
StyD4I CCNGG 2 cut(s) 292, 492
StyI CCWWGG 2 cut(s) 541, 1045
TaaI ACNGT 2 cut(s) 565, 665
TaiI ACGT 1 cut(s) 962
TaqI TCGA 2 cut(s) 61, 550
TasI AATT 7 cut(s) 170, 226, 447, 658, 933, 985, 1050
TfiI GAWTC 1 cut(s) 677
Tru1I TTAA 7 cut(s) 132, 239, 450, 719, 732, 920, 1053
Tru9I TTAA 7 cut(s) 132, 239, 450, 719, 732, 920, 1053
TseFI GTSAC 4 cut(s) 247, 272, 559, 886
TseI GCWGC 3 cut(s) 137, 191, 1021
Tsp45I GTSAC 4 cut(s) 247, 272, 559, 886
TspDTI ATGAA 4 cut(s) 257, 843, 992, 1025
Van91I CCANNNNNTGG 1 cut(s) 811
VpaK11BI GGWCC 4 cut(s) 36, 589, 758, 797
VspI ATTAAT 1 cut(s) 450
XapI RAATTY 1 cut(s) 985
XbaI TCTAGA 1 cut(s) 703
XspI CTAG 4 cut(s) 92, 105, 503, 704
Zsp2I ATGCAT 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.