Rroxscaffold_7G00174620

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002523
Physical Location & Seq
Reverse (-)
14277895 .. 14279998
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00174620.1

Sequence Viewer

Length: 927 bp
ATGGAGGATGCCCAAGAAGTATCTGAGACAATGTCGGAGGGATCATCCGAAAAGATACAGGAAACTCGCGACGAAATGCTCTCCAGGCACAGAAAAGAGACTTCAAAGTTGCAGGACAAGGAAATTCAATTGAAAAAGGCTGCAGCAAAAGGTAGCAAGGCCGAACAAAAAGCTAAGAAAAAGCAGGTGGAGGAAGAGATTTCTCGACTTTCTGCTGAGCTTAAAGAGAAACAAGCCGAAGAACTTGCATCATTAGGCTATAGCAGCACTAACAATGGAGGTGAAAAGGGTAATCTGGATAATTTAGTGAAGGCCATAGCTGGTGTTTCTGTAAGCAGTCAACCTGAGAATGCAAAGCCTAGCAAGAGTTCAAAGAGAAAAGTGAAAAGGGCTCAGGAGGATGCAGCAAGGGAGCAGAGAATTCAAGAAGAGCAGAGCAACTTACTTGAACCCCTTGGTTTGACAATTAATGAGATAAAGCCTGATGGTCATTGCCTCTACCGTGCTATCCAGGATCAGCTGGCTCACCTTTCTGGAGGTTCTTCACCTTACACATACCAAGAGCTTCGAGAAATGGTGGCTGCGTATATGAGGAAGCATGCACCTGATTTTCTCCCATTTTTCTTGTCAGACAATCAAGGAGATGGTGATTCTGATGATTCCCTTGCTGAAAGGTTTGAGAATTACTGTAAGGAAGTGGAGTCAACTGCAGCATGGGGAGGACAGCTAGAGCTTGGGGCTTTAACTCACTGCCTTAAAAAGCCAATCAAGGTATACTCAGGATCATTCCCTGATGTGGAGATGGGTAAGGAGTACAAATGTGAGAGTGGAAATGGTTTTGGTTCTTCTGGTTCGAGTATTATGTTGTCATATCATAAGCACGCATTCGGGCTTGGTGAGCACTATAATTCTGTGGTCCCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

308

Amino Acids

34.06

Weight (kDa)

5.64

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 160 - 302 3.9e-34 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 175
Acc36I ACCTGC 1 cut(s) 175
AccI GTMKAC 1 cut(s) 774
AccII CGCG 1 cut(s) 69
AclWI GGATC 3 cut(s) 49, 522, 790
AcsI RAATTY 2 cut(s) 123, 420
AfaI GTAC 1 cut(s) 815
AfiI CCNNNNNNNGG 1 cut(s) 796
AgsI TTSAA 6 cut(s) 105, 128, 133, 372, 425, 449
AjnI CCWGG 2 cut(s) 83, 510
AluBI AGCT 7 cut(s) 173, 220, 320, 520, 565, 727, 733
AluI AGCT 7 cut(s) 173, 220, 320, 520, 565, 727, 733
Alw21I GWGCWC 1 cut(s) 903
Alw26I GTCTC 2 cut(s) 20, 92
AlwI GGATC 3 cut(s) 49, 522, 790
AoxI GGCC 2 cut(s) 159, 312
ApeKI GCWGC 6 cut(s) 140, 143, 264, 404, 581, 710
ApoI RAATTY 2 cut(s) 123, 420
AseI ATTAAT 1 cut(s) 468
AspS9I GGNCC 1 cut(s) 916
AsuHPI GGTGA 5 cut(s) 293, 518, 537, 659, 908
AvaII GGWCC 1 cut(s) 916
BanII GRGCYC 1 cut(s) 394
Bbv12I GWGCWC 1 cut(s) 903
BbvI GCAGC 6 cut(s) 127, 155, 276, 416, 568, 722
BccI CCATC 3 cut(s) 479, 638, 796
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BciT130I CCWGG 2 cut(s) 85, 512
BcoDI GTCTC 2 cut(s) 20, 92
BfaI CTAG 2 cut(s) 360, 728
BfmI CTRYAG 3 cut(s) 141, 259, 708
BfuAI ACCTGC 1 cut(s) 175
BisI GCNGC 6 cut(s) 141, 144, 265, 405, 582, 711
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 6 cut(s) 142, 145, 266, 406, 583, 712
Bme1390I CCNGG 2 cut(s) 85, 512
Bme18I GGWCC 1 cut(s) 916
BmgT120I GGNCC 1 cut(s) 916
BmiI GGNNCC 1 cut(s) 918
BmrFI CCNGG 2 cut(s) 85, 512
BmsI GCATC 2 cut(s) 257, 391
BpmI CTGGAG 2 cut(s) 67, 555
Bpu10I CCTNAGC 1 cut(s) 393
Bpu1102I GCTNAGC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 454
Bsc4I CCNNNNNNNGG 1 cut(s) 796
Bse3DI GCAATG 1 cut(s) 490
BseBI CCWGG 2 cut(s) 85, 512
BseDI CCNNGG 1 cut(s) 454
BseGI GGATG 3 cut(s) 13, 44, 406
BseLI CCNNNNNNNGG 1 cut(s) 796
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 5 cut(s) 15, 207, 336, 407, 792
BseXI GCAGC 6 cut(s) 127, 155, 276, 416, 568, 722
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 2 cut(s) 161, 314
BsiHKAI GWGCWC 1 cut(s) 903
BslFI GGGAC 1 cut(s) 902
BslI CCNNNNNNNGG 1 cut(s) 796
BsmAI GTCTC 2 cut(s) 20, 92
BsmFI GGGAC 1 cut(s) 902
BsmI GAATGC 2 cut(s) 355, 884
BsnI GGCC 2 cut(s) 161, 314
Bsp1286I GDGCHC 2 cut(s) 394, 903
Bsp143I GATC 3 cut(s) 41, 514, 782
Bsp1720I GCTNAGC 1 cut(s) 216
Bsp68I TCGCGA 1 cut(s) 69
BspANI GGCC 2 cut(s) 161, 314
BspCNI CTCAG 5 cut(s) 16, 208, 337, 406, 791
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 918
BspMAI CTGCAG 2 cut(s) 145, 712
BspMI ACCTGC 1 cut(s) 175
BspPI GGATC 3 cut(s) 49, 522, 790
BspQI GCTCTTC 1 cut(s) 423
BsrDI GCAATG 1 cut(s) 490
BssECI CCNNGG 1 cut(s) 454
BssMI GATC 3 cut(s) 41, 514, 782
BssNAI GTATAC 1 cut(s) 775
BssT1I CCWWGG 1 cut(s) 454
Bst1107I GTATAC 1 cut(s) 775
Bst2UI CCWGG 2 cut(s) 85, 512
Bst4CI ACNGT 2 cut(s) 503, 689
Bst6I CTCTTC 2 cut(s) 189, 423
BstC8I GCNNGC 3 cut(s) 522, 600, 882
BstDEI CTNAG 6 cut(s) 24, 174, 216, 345, 393, 778
BstF5I GGATG 3 cut(s) 13, 44, 406
BstFNI CGCG 1 cut(s) 69
BstKTI GATC 3 cut(s) 44, 517, 785
BstMAI GTCTC 2 cut(s) 20, 92
BstMBI GATC 3 cut(s) 41, 514, 782
BstMWI GCNNNNNNNGC 3 cut(s) 85, 264, 898
BstNI CCWGG 2 cut(s) 85, 512
BstNSI RCATGY 1 cut(s) 602
BstSCI CCNGG 2 cut(s) 83, 510
BstSFI CTRYAG 3 cut(s) 141, 259, 708
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 6 cut(s) 127, 155, 276, 416, 568, 722
BstZ17I GTATAC 1 cut(s) 775
BsuRI GGCC 2 cut(s) 161, 314
BtsCI GGATG 3 cut(s) 13, 44, 406
BtsI GCAGTG 1 cut(s) 748
BtsIMutI CAGTG 1 cut(s) 748
BtuMI TCGCGA 1 cut(s) 69
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 3 cut(s) 522, 600, 882
Cfr13I GGNCC 1 cut(s) 916
Csp6I GTAC 1 cut(s) 814
CviAII CATG 2 cut(s) 599, 714
CviQI GTAC 1 cut(s) 814
DdeI CTNAG 6 cut(s) 24, 174, 216, 345, 393, 778
DpnI GATC 3 cut(s) 43, 516, 784
DpnII GATC 3 cut(s) 41, 514, 782
Eam1104I CTCTTC 2 cut(s) 189, 423
EarI CTCTTC 2 cut(s) 189, 423
Eco130I CCWWGG 1 cut(s) 454
Eco24I GRGCYC 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 916
EcoRI GAATTC 1 cut(s) 420
EcoRII CCWGG 2 cut(s) 83, 510
EcoT14I CCWWGG 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 454
FaeI CATG 2 cut(s) 602, 717
FaqI GGGAC 1 cut(s) 902
FatI CATG 2 cut(s) 598, 713
FblI GTMKAC 1 cut(s) 774
Fnu4HI GCNGC 6 cut(s) 141, 144, 265, 405, 582, 711
FokI GGATG 3 cut(s) 20, 31, 413
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 6 cut(s) 141, 144, 265, 405, 582, 711
FspBI CTAG 2 cut(s) 360, 728
GluI GCNGC 6 cut(s) 141, 144, 265, 405, 582, 711
GsuI CTGGAG 2 cut(s) 67, 555
HaeIII GGCC 2 cut(s) 161, 314
Hin1II CATG 2 cut(s) 602, 717
HincII GTYRAC 2 cut(s) 341, 705
HindII GTYRAC 2 cut(s) 341, 705
HinfI GANTC 3 cut(s) 650, 659, 701
HphI GGTGA 5 cut(s) 293, 518, 537, 659, 908
Hpy166II GTNNAC 3 cut(s) 341, 705, 775
Hpy188I TCNGA 5 cut(s) 25, 37, 49, 631, 655
Hpy188III TCNNGA 8 cut(s) 68, 204, 296, 395, 425, 534, 569, 780
Hpy8I GTNNAC 3 cut(s) 341, 705, 775
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 2 cut(s) 503, 689
HpyCH4V TGCA 7 cut(s) 112, 143, 248, 353, 404, 602, 710
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 264, 898
HpyF3I CTNAG 6 cut(s) 24, 174, 216, 345, 393, 778
Hsp92II CATG 2 cut(s) 602, 717
Kzo9I GATC 3 cut(s) 41, 514, 782
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 1 cut(s) 412
Lsp1109I GCAGC 6 cut(s) 127, 155, 276, 416, 568, 722
LweI GCATC 2 cut(s) 257, 391
MaeI CTAG 2 cut(s) 360, 728
MalI GATC 3 cut(s) 43, 516, 784
MboI GATC 3 cut(s) 41, 514, 782
MboII GAAGA 5 cut(s) 206, 251, 440, 534, 837
MfeI CAATTG 1 cut(s) 128
MhlI GDGCHC 2 cut(s) 394, 903
MluCI AATT 7 cut(s) 123, 128, 301, 420, 465, 682, 907
MlyI GAGTC 1 cut(s) 710
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 8 cut(s) 31, 184, 272, 391, 506, 530, 585, 713
MseI TTAA 4 cut(s) 222, 468, 743, 756
MspA1I CMGCKG 1 cut(s) 520
MspR9I CCNGG 2 cut(s) 85, 512
MunI CAATTG 1 cut(s) 128
Mva1269I GAATGC 2 cut(s) 355, 884
MvaI CCWGG 2 cut(s) 85, 512
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 3 cut(s) 85, 264, 898
NdeII GATC 3 cut(s) 41, 514, 782
NlaIII CATG 2 cut(s) 602, 717
NlaIV GGNNCC 1 cut(s) 918
NruI TCGCGA 1 cut(s) 69
NspI RCATGY 1 cut(s) 602
PaeI GCATGC 1 cut(s) 602
PaqCI CACCTGC 1 cut(s) 175
PciSI GCTCTTC 1 cut(s) 423
PctI GAATGC 2 cut(s) 355, 884
PfeI GAWTC 2 cut(s) 650, 659
PflFI GACNNNGTC 1 cut(s) 31
PfoI TCCNGGA 1 cut(s) 510
PkrI GCNGC 6 cut(s) 142, 145, 266, 406, 583, 712
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
PshBI ATTAAT 1 cut(s) 468
Psp6I CCWGG 2 cut(s) 83, 510
PspGI CCWGG 2 cut(s) 83, 510
PspN4I GGNNCC 1 cut(s) 918
PspPI GGNCC 1 cut(s) 916
PstI CTGCAG 2 cut(s) 145, 712
PsyI GACNNNGTC 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 520
RruI TCGCGA 1 cut(s) 69
RsaI GTAC 1 cut(s) 815
RsaNI GTAC 1 cut(s) 814
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 4 cut(s) 222, 468, 743, 756
SatI GCNGC 6 cut(s) 141, 144, 265, 405, 582, 711
Sau3AI GATC 3 cut(s) 41, 514, 782
Sau96I GGNCC 1 cut(s) 916
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 2 cut(s) 85, 512
SduI GDGCHC 2 cut(s) 394, 903
SfaNI GCATC 2 cut(s) 257, 391
SfcI CTRYAG 3 cut(s) 141, 259, 708
SinI GGWCC 1 cut(s) 916
SphI GCATGC 1 cut(s) 602
Sse9I AATT 7 cut(s) 123, 128, 301, 420, 465, 682, 907
SspMI CTAG 2 cut(s) 360, 728
StyD4I CCNGG 2 cut(s) 83, 510
StyI CCWWGG 1 cut(s) 454
TaaI ACNGT 2 cut(s) 503, 689
TaqI TCGA 3 cut(s) 205, 568, 854
TasI AATT 7 cut(s) 123, 128, 301, 420, 465, 682, 907
TatI WGTACW 1 cut(s) 813
TfiI GAWTC 2 cut(s) 650, 659
Tru1I TTAA 4 cut(s) 222, 468, 743, 756
Tru9I TTAA 4 cut(s) 222, 468, 743, 756
TscAI CASTG 1 cut(s) 755
TseI GCWGC 6 cut(s) 140, 143, 264, 404, 581, 710
TspRI CASTG 1 cut(s) 755
Tth111I GACNNNGTC 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 916
VspI ATTAAT 1 cut(s) 468
XapI RAATTY 2 cut(s) 123, 420
XceI RCATGY 1 cut(s) 602
XmiI GTMKAC 1 cut(s) 774
XspI CTAG 2 cut(s) 360, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.