Rh6BG351000

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002523
Physical Location & Seq
Forward (+)
58160807 .. 58163338
2532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG351000.1

Sequence Viewer

Length: 513 bp
ATGGTTGAAGATGAGAAACTAGGAAAAAAGCTTGAACCCCTTGGTTTGACAATTAATGAGATAAAGCCTGATGGTCATTGCCTCTACCGCGCTATCCAGGATCAGCTGGCTCACCTTTCTGGAGGTTCTTCACCTTACACATACCAAGAGCTTCGAGAAATGGTGGCTGCGTATATGAGGAAGCATGCACCTGATTTCCTCCCATTTTTCTTGTCAGACCATCAAGGAGATGGTGATTCTGATGATTCCCTTGCTGAAAGGTTTGAGAATTACTGTAAGGAAGTGGAGTCAACAGCAACATGGGGAGGACAGCTAGAGCTTGGGGCTTTAACTCACTGCCTTAAAAAGCCAATCAAGGTATACTCAGGATCATTCCCTGATGTGGAGATGGGTAAGGAGTACAATTCTGAGAGTGGAAATGGTTTTGGTTCTTCTGGTTCGAGTATTATGTTGTCATATCATAAGCACGCATTCGGGCTTGGTGAGCACTATAATTCTGTGGTCCCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

170

Amino Acids

18.82

Weight (kDa)

5.17

Isoelectric Point (pI)

31.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 22 - 164 1.8e-34 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 360
AccII CGCG 1 cut(s) 90
AciI CCGC 1 cut(s) 88
AclWI GGATC 2 cut(s) 108, 376
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 2 cut(s) 8, 35
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 5 cut(s) 31, 106, 151, 313, 319
AluI AGCT 5 cut(s) 31, 106, 151, 313, 319
Alw21I GWGCWC 1 cut(s) 489
AlwI GGATC 2 cut(s) 108, 376
ApeKI GCWGC 1 cut(s) 167
AseI ATTAAT 1 cut(s) 54
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 502
AsuHPI GGTGA 4 cut(s) 104, 123, 245, 494
AvaII GGWCC 1 cut(s) 502
Bbv12I GWGCWC 1 cut(s) 489
BbvI GCAGC 1 cut(s) 154
BccI CCATC 4 cut(s) 65, 224, 228, 382
BciT130I CCWGG 1 cut(s) 98
BfaI CTAG 2 cut(s) 20, 314
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 502
BmgT120I GGNCC 1 cut(s) 502
BmiI GGNNCC 1 cut(s) 504
BmrFI CCNGG 1 cut(s) 98
BpmI CTGGAG 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse3DI GCAATG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 2 cut(s) 378, 399
BseXI GCAGC 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 489
BslFI GGGAC 1 cut(s) 488
BslI CCNNNNNNNGG 1 cut(s) 382
BsmFI GGGAC 1 cut(s) 488
BsmI GAATGC 1 cut(s) 470
Bsp1286I GDGCHC 1 cut(s) 489
Bsp143I GATC 2 cut(s) 100, 368
BspACI CCGC 1 cut(s) 88
BspCNI CTCAG 2 cut(s) 377, 400
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 504
BspPI GGATC 2 cut(s) 108, 376
BsrDI GCAATG 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 2 cut(s) 100, 368
BssNAI GTATAC 1 cut(s) 361
BssT1I CCWWGG 1 cut(s) 40
Bst1107I GTATAC 1 cut(s) 361
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 275
BstC8I GCNNGC 3 cut(s) 108, 186, 468
BstDEI CTNAG 2 cut(s) 364, 408
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 2 cut(s) 103, 371
BstMBI GATC 2 cut(s) 100, 368
BstMWI GCNNNNNNNGC 2 cut(s) 87, 484
BstNI CCWGG 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 96
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 154
BstZ17I GTATAC 1 cut(s) 361
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 334
Cac8I GCNNGC 3 cut(s) 108, 186, 468
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 502
Csp6I GTAC 1 cut(s) 400
CviAII CATG 2 cut(s) 185, 300
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 2 cut(s) 364, 408
DpnI GATC 2 cut(s) 102, 370
DpnII GATC 2 cut(s) 100, 368
Eco130I CCWWGG 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 2 cut(s) 188, 303
FaqI GGGAC 1 cut(s) 488
FatI CATG 2 cut(s) 184, 299
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 2 cut(s) 20, 314
GlaI GCGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 168
GsuI CTGGAG 1 cut(s) 141
HhaI GCGC 1 cut(s) 92
Hin1II CATG 2 cut(s) 188, 303
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 3 cut(s) 236, 245, 287
HphI GGTGA 4 cut(s) 104, 123, 245, 494
Hpy166II GTNNAC 2 cut(s) 291, 361
Hpy188I TCNGA 3 cut(s) 217, 241, 409
Hpy188III TCNNGA 3 cut(s) 120, 155, 366
Hpy8I GTNNAC 2 cut(s) 291, 361
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 484
HpyF3I CTNAG 2 cut(s) 364, 408
Hsp92II CATG 2 cut(s) 188, 303
HspAI GCGC 1 cut(s) 90
Kzo9I GATC 2 cut(s) 100, 368
LpnPI CCDG 9 cut(s) 81, 83, 92, 105, 110, 204, 351, 390, 420
Lsp1109I GCAGC 1 cut(s) 154
MaeI CTAG 2 cut(s) 20, 314
MalI GATC 2 cut(s) 102, 370
MboI GATC 2 cut(s) 100, 368
MboII GAAGA 3 cut(s) 20, 120, 423
MhlI GDGCHC 1 cut(s) 489
MluCI AATT 4 cut(s) 51, 268, 403, 493
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 5 cut(s) 92, 116, 171, 209, 299
MseI TTAA 3 cut(s) 54, 329, 342
MspA1I CMGCKG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 98
Mva1269I GAATGC 1 cut(s) 470
MvaI CCWGG 1 cut(s) 98
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 87, 484
NdeII GATC 2 cut(s) 100, 368
NlaIII CATG 2 cut(s) 188, 303
NlaIV GGNNCC 1 cut(s) 504
NspI RCATGY 1 cut(s) 188
PaeI GCATGC 1 cut(s) 188
PctI GAATGC 1 cut(s) 470
PfeI GAWTC 2 cut(s) 236, 245
PfoI TCCNGGA 1 cut(s) 96
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PshBI ATTAAT 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 504
PspPI GGNCC 1 cut(s) 502
PvuII CAGCTG 1 cut(s) 106
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SaqAI TTAA 3 cut(s) 54, 329, 342
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 2 cut(s) 100, 368
Sau96I GGNCC 1 cut(s) 502
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 489
SinI GGWCC 1 cut(s) 502
SphI GCATGC 1 cut(s) 188
Sse9I AATT 4 cut(s) 51, 268, 403, 493
SsiI CCGC 1 cut(s) 88
SspMI CTAG 2 cut(s) 20, 314
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 1 cut(s) 275
TaqI TCGA 2 cut(s) 154, 440
TasI AATT 4 cut(s) 51, 268, 403, 493
TatI WGTACW 1 cut(s) 399
TfiI GAWTC 2 cut(s) 236, 245
Tru1I TTAA 3 cut(s) 54, 329, 342
Tru9I TTAA 3 cut(s) 54, 329, 342
TscAI CASTG 1 cut(s) 341
TseI GCWGC 1 cut(s) 167
TspRI CASTG 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 502
VspI ATTAAT 1 cut(s) 54
XceI RCATGY 1 cut(s) 188
XcmI CCANNNNNNNNNTGG 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 360
XspI CTAG 2 cut(s) 20, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.