Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002523

Physical Location & Seq

Genomic Coordinates Forward (+)

21745344 .. 21747698

Gene Structure 2355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G254400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGATCTTCTTGATGGACATAATACTATTATTGTTCAAAGTGGCTTTCAGGATTGCTCAAATGGAGGATGCCCAAGAAGTATCTGAAACAATGTCAGACAAATCATCTGAAAATACACAGGAAACTCGTGATGAAATGCTTTCGAGGCACAGGAAAGAGATATCAAAACTTCAGGACAAGGAAATTGAAATGAAGAAGGCAGCTGCCAAAGGTAGCAAGGCCGAACAAAAAGCTAAGAAAAAGCAGGTGGAGGAAGAGATTTCTCGGCTTTCTGCTAAGCTTAAAGAAAAACATGCTCAAGAACTTGCTTCGTTAGGCTATAGCACTAGTAATGGAACTCAGAAAGCAAAACTTGACAATTTAGTGAAAGCCATAGCTGGTGTTTCTGTCACCAGTCAACCTGACCAAGCAAAGCCCAGCAAGAGTTCAAAGAGGCGGGAGAAAAGAGCTCAGCAAGATGCAGCTAGGGAGCAAAGAATTCAAGAAGAGCAGAGCAACCTTGTAAGTGATCGAATGATTGAGAATGAGAAGCTAGAAAAAAAGCTTGAACCCCTTGGTTTGACCATTAATGAAATAAAGCCCGATGGTCATTGCCTCTACCGAGCTATCCAGGATCAGCTGGCCCATCTTTCCGGAGGTTCATCACCTCACACGTACCAAGAGCTTCGAGAAATGGTGGCTGCTTATATGAGGAAGCATGCATCTGATTTTCTCCCATTTTTTTTGTCAGAGAATCCGGTAGATGGAGATTCTGAGGATTCACTTGCAGAGAGGTTTGAGAATTACTGTAAAGAAGTAGAGTCAACAGCGGCATGGGGAGGGCAGCTAGAGCTTGGTGCTTTAACTCACTGCCTTAAAAAGCATATCATGATATACTCAGGATCCTTCCCTGATGTGGAGATGGGCAAGGAGTACAAATCAGATAGCAGCAGTACGGATTCTTCTGATTCGAGTATTATGTTGTCATACCATAAGCATGCATTTGGGCTTGGTGAGCACTATAATTCTGTGGTTCGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

341

Amino Acids

38.34

Weight (kDa)

6.17

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62940 AT3G62940 AT3G62940 AT3G62940 AT3G62940
fragaria_vesca	FvH4_2g14201 FvH4_2g14201 FvH4_2g14201
malus_domestica	MD03G1278200.v1.1 MD11G1300200.v1.1
prunus_persica	Prupe.2G090200_v2.0.a1 Prupe.2G090200_v2.0.a1 Prupe.8G254400_v2.0.a1 Prupe.8G254400_v2.0.a1 Prupe.8G254400_v2.0.a1
pyrus_communis	pycom03g22160 pycom11g26360
rosa_chinensis	RchiOBHm_Chr3g0496291 RchiOBHm_Chr5g0001231 RchiOBHm_Chr5g0082561 RchiOBHm_Chr6g0247511 RchiOBHm_Chr6g0292881
rosa_laevigata	RLG00000011983 RLG00000015114 RLG00000015120
rosa_multiflora	Rmu_sc0000147.1_g000079 Rmu_sc0000391.1_g000019 Rmu_sc0000391.1_g000020 Rmu_sc0000639.1_g000016 Rmu_ssc0000454.1_g000017
rosa_roxburghii	Rroxscaffold_4G00287890 Rroxscaffold_6G00416780 Rroxscaffold_7G00174620 Rroxscaffold_7G00186560
rosa_rugosa	Rorug06G0230500
rosa_samantha	Rh3CG361400 Rh6AG343800 Rh6BG351000 Rh6CG358000 Rh6DG343900
rosa_wichuraiana	Rw6G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	235
Acc36I	ACCTGC	1 cut(s)	235
AccIII	TCCGGA	1 cut(s)	632
AciI	CCGC	2 cut(s)	436, 809
AclWI	GGATC	3 cut(s)	621, 876, 889
AcsI	RAATTY	1 cut(s)	477
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	3 cut(s)	656, 914, 934
AfiI	CCNNNNNNNGG	2 cut(s)	743, 895
AflIII	ACRYGT	1 cut(s)	651
AgsI	TTSAA	5 cut(s)	37, 188, 429, 482, 548
AhlI	ACTAGT	1 cut(s)	326
AjnI	CCWGG	1 cut(s)	609
Alw21I	GWGCWC	2 cut(s)	451, 999
AlwI	GGATC	3 cut(s)	621, 876, 889
Aor13HI	TCCGGA	1 cut(s)	632
AoxI	GGCC	2 cut(s)	219, 621
ApeKI	GCWGC	6 cut(s)	200, 203, 461, 680, 823, 927
ApoI	RAATTY	1 cut(s)	477
AseI	ATTAAT	1 cut(s)	567
AspS9I	GGNCC	1 cut(s)	622
AsuHPI	GGTGA	3 cut(s)	382, 636, 1004
AsuII	TTCGAA	1 cut(s)	1015
BamHI	GGATCC	1 cut(s)	881
BanII	GRGCYC	1 cut(s)	451
BarI	GAAGNNNNNNTAC	2 cut(s)	925, 957
BauI	CACGAG	1 cut(s)	126
Bbv12I	GWGCWC	2 cut(s)	451, 999
BbvI	GCAGC	6 cut(s)	190, 212, 473, 667, 835, 939
BccI	CCATC	5 cut(s)	7, 578, 633, 737, 895
BciT130I	CCWGG	1 cut(s)	611
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	4 cut(s)	327, 465, 533, 827
BfmI	CTRYAG	1 cut(s)	319
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	7 cut(s)	201, 204, 462, 681, 810, 824, 928
BlpI	GCTNAGC	2 cut(s)	276, 450
BlsI	GCNGC	7 cut(s)	202, 205, 463, 682, 811, 825, 929
Bme1390I	CCNGG	1 cut(s)	611
BmgT120I	GGNCC	1 cut(s)	622
BmiI	GGNNCC	1 cut(s)	883
BmrFI	CCNGG	1 cut(s)	611
BmsI	GCATC	3 cut(s)	58, 448, 710
Bpu1102I	GCTNAGC	2 cut(s)	276, 450
Bpu14I	TTCGAA	1 cut(s)	1015
BpuEI	CTTGAG	1 cut(s)	282
BsaAI	YACGTR	1 cut(s)	654
BsaJI	CCNNGG	1 cut(s)	553
BsaWI	WCCGGW	2 cut(s)	632, 736
Bsc4I	CCNNNNNNNGG	2 cut(s)	743, 895
Bse1I	ACTGG	1 cut(s)	393
Bse3DI	GCAATG	1 cut(s)	589
BseAI	TCCGGA	1 cut(s)	632
BseBI	CCWGG	1 cut(s)	611
BseDI	CCNNGG	1 cut(s)	553
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	2 cut(s)	743, 895
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	4 cut(s)	353, 464, 744, 891
BseNI	ACTGG	1 cut(s)	393
BseXI	GCAGC	6 cut(s)	190, 212, 473, 667, 835, 939
BseYI	CCCAGC	1 cut(s)	416
BshFI	GGCC	2 cut(s)	221, 623
BsiHKAI	GWGCWC	2 cut(s)	451, 999
BsiSI	CCGG	2 cut(s)	633, 737
BslI	CCNNNNNNNGG	2 cut(s)	743, 895
BsnI	GGCC	2 cut(s)	221, 623
Bsp119I	TTCGAA	1 cut(s)	1015
Bsp1286I	GDGCHC	2 cut(s)	451, 999
Bsp13I	TCCGGA	1 cut(s)	632
Bsp143I	GATC	4 cut(s)	3, 508, 613, 881
Bsp1720I	GCTNAGC	2 cut(s)	276, 450
BspACI	CCGC	2 cut(s)	436, 809
BspANI	GGCC	2 cut(s)	221, 623
BspCNI	CTCAG	4 cut(s)	352, 463, 745, 890
BspEI	TCCGGA	1 cut(s)	632
BspHI	TCATGA	1 cut(s)	867
BspLI	GGNNCC	1 cut(s)	883
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	3 cut(s)	621, 876, 889
BspQI	GCTCTTC	1 cut(s)	480
BspT104I	TTCGAA	1 cut(s)	1015
BsrDI	GCAATG	1 cut(s)	589
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	1 cut(s)	553
BssMI	GATC	4 cut(s)	3, 508, 613, 881
BssSI	CACGAG	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	553
Bst2BI	CACGAG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	1 cut(s)	788
Bst6I	CTCTTC	2 cut(s)	249, 480
BstBAI	YACGTR	1 cut(s)	654
BstBI	TTCGAA	1 cut(s)	1015
BstC8I	GCNNGC	3 cut(s)	621, 699, 978
BstDEI	CTNAG	6 cut(s)	234, 276, 339, 450, 753, 877
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	4 cut(s)	6, 511, 616, 884
BstMBI	GATC	4 cut(s)	3, 508, 613, 881
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 829, 994
BstNI	CCWGG	1 cut(s)	611
BstNSI	RCATGY	3 cut(s)	296, 701, 980
BstSCI	CCNGG	1 cut(s)	609
BstSFI	CTRYAG	1 cut(s)	319
BstV1I	GCAGC	6 cut(s)	190, 212, 473, 667, 835, 939
BstX2I	RGATCY	1 cut(s)	881
BstYI	RGATCY	1 cut(s)	881
BsuRI	GGCC	2 cut(s)	221, 623
BtsCI	GGATG	1 cut(s)	73
BtsI	GCAGTG	1 cut(s)	847
BtsIMutI	CAGTG	1 cut(s)	847
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	3 cut(s)	621, 699, 978
CciI	TCATGA	1 cut(s)	867
Cfr13I	GGNCC	1 cut(s)	622
Csp6I	GTAC	3 cut(s)	655, 913, 933
CviAII	CATG	5 cut(s)	293, 698, 813, 868, 977
CviQI	GTAC	3 cut(s)	655, 913, 933
DdeI	CTNAG	6 cut(s)	234, 276, 339, 450, 753, 877
DpnI	GATC	4 cut(s)	5, 510, 615, 883
DpnII	GATC	4 cut(s)	3, 508, 613, 881
Eam1104I	CTCTTC	2 cut(s)	249, 480
EarI	CTCTTC	2 cut(s)	249, 480
Ecl136II	GAGCTC	1 cut(s)	449
Eco130I	CCWWGG	1 cut(s)	553
Eco24I	GRGCYC	1 cut(s)	451
Eco32I	GATATC	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	449
Eco57I	CTGAAG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	477
EcoRII	CCWGG	1 cut(s)	609
EcoRV	GATATC	1 cut(s)	162
EcoT14I	CCWWGG	1 cut(s)	553
EcoT22I	ATGCAT	2 cut(s)	703, 982
EcoT38I	GRGCYC	1 cut(s)	451
ErhI	CCWWGG	1 cut(s)	553
FaeI	CATG	5 cut(s)	296, 701, 816, 871, 980
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FatI	CATG	5 cut(s)	292, 697, 812, 867, 976
FauI	CCCGC	1 cut(s)	429
Fnu4HI	GCNGC	7 cut(s)	201, 204, 462, 681, 810, 824, 928
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	1 cut(s)	451
Fsp4HI	GCNGC	7 cut(s)	201, 204, 462, 681, 810, 824, 928
FspBI	CTAG	4 cut(s)	327, 465, 533, 827
GluI	GCNGC	7 cut(s)	201, 204, 462, 681, 810, 824, 928
GsaI	CCCAGC	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	221, 623
HapII	CCGG	2 cut(s)	633, 737
Hin1II	CATG	5 cut(s)	296, 701, 816, 871, 980
HincII	GTYRAC	2 cut(s)	398, 804
HindII	GTYRAC	2 cut(s)	398, 804
HindIII	AAGCTT	2 cut(s)	278, 542
HinfI	GANTC	6 cut(s)	733, 749, 758, 800, 938, 947
HpaII	CCGG	2 cut(s)	633, 737
HphI	GGTGA	3 cut(s)	382, 636, 1004
Hpy166II	GTNNAC	2 cut(s)	398, 804
Hpy188I	TCNGA	9 cut(s)	85, 97, 109, 342, 706, 730, 754, 922, 946
Hpy8I	GTNNAC	2 cut(s)	398, 804
HpyAV	CCTTC	2 cut(s)	190, 895
HpyCH4III	ACNGT	1 cut(s)	788
HpyCH4IV	ACGT	1 cut(s)	653
HpyCH4V	TGCA	4 cut(s)	461, 701, 767, 980
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 829, 994
HpyF3I	CTNAG	6 cut(s)	234, 276, 339, 450, 753, 877
HpySE526I	ACGT	1 cut(s)	653
Hsp92II	CATG	5 cut(s)	296, 701, 816, 871, 980
Kpn2I	TCCGGA	1 cut(s)	632
Kzo9I	GATC	4 cut(s)	3, 508, 613, 881
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	6 cut(s)	190, 212, 473, 667, 835, 939
LweI	GCATC	3 cut(s)	58, 448, 710
MaeI	CTAG	4 cut(s)	327, 465, 533, 827
MaeII	ACGT	1 cut(s)	653
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	4 cut(s)	5, 510, 615, 883
MboI	GATC	4 cut(s)	3, 508, 613, 881
MboII	GAAGA	4 cut(s)	205, 266, 497, 933
MflI	RGATCY	1 cut(s)	881
MhlI	GDGCHC	2 cut(s)	451, 999
MluCI	AATT	5 cut(s)	183, 358, 477, 781, 1003
MlyI	GAGTC	1 cut(s)	809
Mph1103I	ATGCAT	2 cut(s)	703, 982
MroI	TCCGGA	1 cut(s)	632
MseI	TTAA	4 cut(s)	282, 567, 842, 855
MslI	CAYNNNNRTG	1 cut(s)	975
MspA1I	CMGCKG	3 cut(s)	203, 619, 809
MspI	CCGG	2 cut(s)	633, 737
MspR9I	CCNGG	1 cut(s)	611
MvaI	CCWGG	1 cut(s)	611
MwoI	GCNNNNNNNGC	3 cut(s)	145, 829, 994
NdeII	GATC	4 cut(s)	3, 508, 613, 881
NlaIII	CATG	5 cut(s)	296, 701, 816, 871, 980
NlaIV	GGNNCC	1 cut(s)	883
NmeAIII	GCCGAG	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	388
NsiI	ATGCAT	2 cut(s)	703, 982
NspI	RCATGY	3 cut(s)	296, 701, 980
NspV	TTCGAA	1 cut(s)	1015
PaeI	GCATGC	2 cut(s)	701, 980
PagI	TCATGA	1 cut(s)	867
PaqCI	CACCTGC	1 cut(s)	235
PciSI	GCTCTTC	1 cut(s)	480
PfeI	GAWTC	5 cut(s)	733, 749, 758, 938, 947
PfoI	TCCNGGA	1 cut(s)	609
PkrI	GCNGC	7 cut(s)	202, 205, 463, 682, 811, 825, 929
PleI	GAGTC	1 cut(s)	808
PpsI	GAGTC	1 cut(s)	808
Ppu21I	YACGTR	1 cut(s)	654
PshBI	ATTAAT	1 cut(s)	567
Psp124BI	GAGCTC	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	609
PspFI	CCCAGC	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	609
PspN4I	GGNNCC	1 cut(s)	883
PspPI	GGNCC	1 cut(s)	622
PsuI	RGATCY	1 cut(s)	881
PvuII	CAGCTG	2 cut(s)	203, 619
RsaI	GTAC	3 cut(s)	656, 914, 934
RsaNI	GTAC	3 cut(s)	655, 913, 933
RseI	CAYNNNNRTG	1 cut(s)	975
SacI	GAGCTC	1 cut(s)	451
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	4 cut(s)	282, 567, 842, 855
SatI	GCNGC	7 cut(s)	201, 204, 462, 681, 810, 824, 928
Sau3AI	GATC	4 cut(s)	3, 508, 613, 881
Sau96I	GGNCC	1 cut(s)	622
SchI	GAGTC	1 cut(s)	809
ScrFI	CCNGG	1 cut(s)	611
SduI	GDGCHC	2 cut(s)	451, 999
SfaNI	GCATC	3 cut(s)	58, 448, 710
SfcI	CTRYAG	1 cut(s)	319
SfuI	TTCGAA	1 cut(s)	1015
SmiMI	CAYNNNNRTG	1 cut(s)	975
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
SpeI	ACTAGT	1 cut(s)	326
SphI	GCATGC	2 cut(s)	701, 980
Sse9I	AATT	5 cut(s)	183, 358, 477, 781, 1003
SsiI	CCGC	2 cut(s)	436, 809
SspMI	CTAG	4 cut(s)	327, 465, 533, 827
SstI	GAGCTC	1 cut(s)	451
StyD4I	CCNGG	1 cut(s)	609
StyI	CCWWGG	1 cut(s)	553
TaaI	ACNGT	1 cut(s)	788
TaiI	ACGT	1 cut(s)	656
TaqI	TCGA	5 cut(s)	143, 511, 667, 950, 1015
TasI	AATT	5 cut(s)	183, 358, 477, 781, 1003
TatI	WGTACW	1 cut(s)	912
TauI	GCSGC	1 cut(s)	812
TfiI	GAWTC	5 cut(s)	733, 749, 758, 938, 947
Tru1I	TTAA	4 cut(s)	282, 567, 842, 855
Tru9I	TTAA	4 cut(s)	282, 567, 842, 855
TscAI	CASTG	1 cut(s)	854
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	6 cut(s)	200, 203, 461, 680, 823, 927
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	4 cut(s)	147, 206, 585, 630
TspGWI	ACGGA	1 cut(s)	950
TspRI	CASTG	1 cut(s)	854
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	1 cut(s)	477
XceI	RCATGY	3 cut(s)	296, 701, 980
XspI	CTAG	4 cut(s)	327, 465, 533, 827
Zsp2I	ATGCAT	2 cut(s)	703, 982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.