Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002523

Physical Location & Seq

Genomic Coordinates Forward (+)

8808827 .. 8809635

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00287890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGTGCCTAGGCATCGAAGGCTCGATGAACCAGTTGAGGGAGTCAACGATGTGCTTCTGGTTACCCCGGACGGATCCTATGACGAATTTGAGGACCCTTTTACTTACATGTGCAACCCTAACAACCCGGTATCGAGCTCCAAACCATGGGCCGAGGAGAGCCGGAGATCCACCACCATATTCATCAACACCGCCGCGTCCACCGACCCGGGTAATTTGAGGATGAAGCTCCAAGTCGAATTAGAAGAGACGGCGGCGGGATTTCATAAGACGGCGGCGGAATGTCGTGAACTTCACAAATCCATGGCATCAATGGCGACGGAGCGAGGCTATATTTCGGTCCGAGATATTAAACGAATTGAGGCAATTTCGGTTGGAGCGAACAGCTCGGTTGAGGCCGCCGCCTCCACCACCGGCCGCAATGGCGGATCCCTACCATTACCGGCGGCACCAACCTCCGTGTCGTCAAGACCACCAATCCTTCACCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.7

Weight (kDa)

5.58

Isoelectric Point (pI)

60.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62940 AT3G62940 AT3G62940 AT3G62940 AT3G62940
fragaria_vesca	FvH4_2g14201 FvH4_2g14201 FvH4_2g14201
malus_domestica	MD03G1278200.v1.1 MD11G1300200.v1.1
prunus_persica	Prupe.2G090200_v2.0.a1 Prupe.2G090200_v2.0.a1 Prupe.8G254400_v2.0.a1 Prupe.8G254400_v2.0.a1 Prupe.8G254400_v2.0.a1
pyrus_communis	pycom03g22160 pycom11g26360
rosa_chinensis	RchiOBHm_Chr3g0496291 RchiOBHm_Chr5g0001231 RchiOBHm_Chr5g0082561 RchiOBHm_Chr6g0247511 RchiOBHm_Chr6g0292881
rosa_laevigata	RLG00000011983 RLG00000015114 RLG00000015120
rosa_multiflora	Rmu_sc0000147.1_g000079 Rmu_sc0000391.1_g000019 Rmu_sc0000391.1_g000020 Rmu_sc0000639.1_g000016 Rmu_ssc0000454.1_g000017
rosa_roxburghii	Rroxscaffold_4G00287890 Rroxscaffold_6G00416780 Rroxscaffold_7G00174620 Rroxscaffold_7G00186560
rosa_rugosa	Rorug06G0230500
rosa_samantha	Rh3CG361400 Rh6AG343800 Rh6BG351000 Rh6CG358000 Rh6DG343900
rosa_wichuraiana	Rw6G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 448
AccB7I	CCANNNNNTGG	1 cut(s)	147
AccII	CGCG	1 cut(s)	197
AclWI	GGATC	5 cut(s)	69, 82, 162, 423, 436
AcoI	YGGCCR	1 cut(s)	415
AcsI	RAATTY	1 cut(s)	86
AfiI	CCNNNNNNNGG	2 cut(s)	38, 147
AflIII	ACRYGT	1 cut(s)	108
AluBI	AGCT	3 cut(s)	138, 229, 387
AluI	AGCT	3 cut(s)	138, 229, 387
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	5 cut(s)	69, 82, 162, 423, 436
Ama87I	CYCGRG	1 cut(s)	208
AoxI	GGCC	3 cut(s)	150, 396, 415
ApoI	RAATTY	1 cut(s)	86
AspA2I	CCTAGG	1 cut(s)	8
AspS9I	GGNCC	3 cut(s)	94, 150, 340
AsuC2I	CCSGG	4 cut(s)	68, 128, 209, 210
AsuHPI	GGTGA	1 cut(s)	476
AvaI	CYCGRG	1 cut(s)	208
AvaII	GGWCC	2 cut(s)	94, 340
AvrII	CCTAGG	1 cut(s)	8
BamHI	GGATCC	2 cut(s)	74, 428
BanI	GGYRCC	2 cut(s)	4, 448
BanII	GRGCYC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	140
BceAI	ACGGC	2 cut(s)	267, 288
BcnI	CCSGG	4 cut(s)	68, 128, 209, 210
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	1 cut(s)	9
BglI	GCCNNNNNGGC	1 cut(s)	423
BisI	GCNGC	7 cut(s)	195, 255, 276, 399, 402, 418, 447
BlnI	CCTAGG	1 cut(s)	8
BlsI	GCNGC	7 cut(s)	196, 256, 277, 400, 403, 419, 448
Bme1390I	CCNGG	4 cut(s)	68, 128, 209, 210
Bme18I	GGWCC	2 cut(s)	94, 340
BmeT110I	CYCGRG	1 cut(s)	208
BmgT120I	GGNCC	3 cut(s)	94, 150, 340
BmiI	GGNNCC	5 cut(s)	6, 76, 96, 430, 450
BmrFI	CCNGG	4 cut(s)	68, 128, 209, 210
BmsI	GCATC	2 cut(s)	22, 317
BpuMI	CCSGG	4 cut(s)	68, 128, 209, 210
BsaJI	CCNNGG	6 cut(s)	8, 66, 146, 153, 208, 303
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 147
Bse118I	RCCGGY	2 cut(s)	413, 442
Bse1I	ACTGG	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	427
BseDI	CCNNGG	6 cut(s)	8, 66, 146, 153, 208, 303
BseGI	GGATG	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	38, 147
BseMI	GCAATG	1 cut(s)	427
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	170
BseX3I	CGGCCG	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	197
Bsh1285I	CGRYCG	1 cut(s)	418
BshFI	GGCC	3 cut(s)	152, 398, 417
BshNI	GGYRCC	2 cut(s)	4, 448
BsiEI	CGRYCG	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	140
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	6 cut(s)	68, 128, 163, 209, 414, 443
BslI	CCNNNNNNNGG	2 cut(s)	38, 147
BsmAI	GTCTC	1 cut(s)	242
BsmBI	CGTCTC	1 cut(s)	242
BsnI	GGCC	3 cut(s)	152, 398, 417
BsoBI	CYCGRG	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	3 cut(s)	74, 167, 428
Bsp19I	CCATGG	2 cut(s)	146, 303
BspANI	GGCC	3 cut(s)	152, 398, 417
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	5 cut(s)	6, 76, 96, 430, 450
BspPI	GGATC	5 cut(s)	69, 82, 162, 423, 436
BspT107I	GGYRCC	2 cut(s)	4, 448
BsrDI	GCAATG	1 cut(s)	427
BsrFI	RCCGGY	2 cut(s)	413, 442
BsrI	ACTGG	1 cut(s)	32
BssAI	RCCGGY	2 cut(s)	413, 442
BssECI	CCNNGG	6 cut(s)	8, 66, 146, 153, 208, 303
BssMI	GATC	3 cut(s)	74, 167, 428
BssT1I	CCWWGG	3 cut(s)	8, 146, 303
Bst6I	CTCTTC	1 cut(s)	240
BstDSI	CCRYGG	2 cut(s)	146, 303
BstEII	GGTNACC	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	228
BstFNI	CGCG	1 cut(s)	197
BstKTI	GATC	3 cut(s)	77, 170, 431
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	3 cut(s)	74, 167, 428
BstMCI	CGRYCG	1 cut(s)	418
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 314, 423
BstNSI	RCATGY	1 cut(s)	112
BstPI	GGTNACC	1 cut(s)	61
BstSCI	CCNGG	4 cut(s)	66, 126, 207, 208
BstUI	CGCG	1 cut(s)	197
BstX2I	RGATCY	3 cut(s)	74, 167, 428
BstYI	RGATCY	3 cut(s)	74, 167, 428
BstZI	CGGCCG	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	152, 398, 417
BtgI	CCRYGG	2 cut(s)	146, 303
BtsCI	GGATG	1 cut(s)	228
Cfr10I	RCCGGY	2 cut(s)	413, 442
Cfr13I	GGNCC	3 cut(s)	94, 150, 340
Cfr9I	CCCGGG	1 cut(s)	208
CpoI	CGGWCCG	1 cut(s)	340
CseI	GACGC	1 cut(s)	186
CspI	CGGWCCG	1 cut(s)	340
CviAII	CATG	3 cut(s)	109, 147, 304
CviJI	RGCY	9 cut(s)	22, 138, 152, 162, 229, 330, 387, 398, 417
CviKI_1	RGCY	9 cut(s)	22, 138, 152, 162, 229, 330, 387, 398, 417
DpnI	GATC	3 cut(s)	76, 169, 430
DpnII	GATC	3 cut(s)	74, 167, 428
EaeI	YGGCCR	1 cut(s)	415
EagI	CGGCCG	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
EciI	GGCGGA	2 cut(s)	293, 441
Ecl136II	GAGCTC	1 cut(s)	138
EclXI	CGGCCG	1 cut(s)	415
Eco130I	CCWWGG	3 cut(s)	8, 146, 303
Eco24I	GRGCYC	1 cut(s)	140
Eco47I	GGWCC	2 cut(s)	94, 340
Eco52I	CGGCCG	1 cut(s)	415
Eco53kI	GAGCTC	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	208
Eco91I	GGTNACC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	94
EcoO65I	GGTNACC	1 cut(s)	61
EcoT14I	CCWWGG	3 cut(s)	8, 146, 303
EcoT38I	GRGCYC	1 cut(s)	140
ErhI	CCWWGG	3 cut(s)	8, 146, 303
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	3 cut(s)	112, 150, 307
FaiI	YATR	7 cut(s)	81, 110, 148, 179, 267, 305, 333
FatI	CATG	3 cut(s)	108, 146, 303
FauI	CCCGC	1 cut(s)	250
Fnu4HI	GCNGC	7 cut(s)	195, 255, 276, 399, 402, 418, 447
FokI	GGATG	1 cut(s)	235
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	7 cut(s)	195, 255, 276, 399, 402, 418, 447
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	7 cut(s)	195, 255, 276, 399, 402, 418, 447
HaeIII	GGCC	3 cut(s)	152, 398, 417
HapII	CCGG	6 cut(s)	68, 128, 163, 209, 414, 443
HgaI	GACGC	1 cut(s)	186
Hin1II	CATG	3 cut(s)	112, 150, 307
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	42
HpaII	CCGG	6 cut(s)	68, 128, 163, 209, 414, 443
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	3 cut(s)	46, 201, 290
Hpy188I	TCNGA	1 cut(s)	344
Hpy188III	TCNNGA	2 cut(s)	287, 468
Hpy8I	GTNNAC	3 cut(s)	46, 201, 290
Hpy99I	CGWCG	1 cut(s)	322
HpyAV	CCTTC	2 cut(s)	12, 491
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 314, 423
Hsp92II	CATG	3 cut(s)	112, 150, 307
Kzo9I	GATC	3 cut(s)	74, 167, 428
LmnI	GCTCC	4 cut(s)	143, 234, 322, 377
LpnPI	CCDG	8 cut(s)	44, 45, 81, 141, 176, 222, 427, 456
LweI	GCATC	2 cut(s)	22, 317
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	3 cut(s)	76, 169, 430
MboI	GATC	3 cut(s)	74, 167, 428
MboII	GAAGA	1 cut(s)	257
MflI	RGATCY	3 cut(s)	74, 167, 428
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	5 cut(s)	86, 214, 239, 357, 366
MlyI	GAGTC	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	9 cut(s)	31, 85, 148, 213, 320, 355, 388, 415, 466
MseI	TTAA	1 cut(s)	351
MspI	CCGG	6 cut(s)	68, 128, 163, 209, 414, 443
MspR9I	CCNGG	4 cut(s)	68, 128, 209, 210
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	3 cut(s)	19, 314, 423
NciI	CCSGG	4 cut(s)	68, 128, 209, 210
NcoI	CCATGG	2 cut(s)	146, 303
NdeII	GATC	3 cut(s)	74, 167, 428
NlaIII	CATG	3 cut(s)	112, 150, 307
NlaIV	GGNNCC	5 cut(s)	6, 76, 96, 430, 450
NmeAIII	GCCGAG	1 cut(s)	178
NspI	RCATGY	1 cut(s)	112
PciI	ACATGT	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	1 cut(s)	377
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	7 cut(s)	196, 256, 277, 400, 403, 419, 448
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PpuMI	RGGWCCY	1 cut(s)	94
PscI	ACATGT	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	94
PspEI	GGTNACC	1 cut(s)	61
PspN4I	GGNNCC	5 cut(s)	6, 76, 96, 430, 450
PspPI	GGNCC	3 cut(s)	94, 150, 340
PspPPI	RGGWCCY	1 cut(s)	94
PsuI	RGATCY	3 cut(s)	74, 167, 428
Rsr2I	CGGWCCG	1 cut(s)	340
RsrII	CGGWCCG	1 cut(s)	340
SacI	GAGCTC	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	7 cut(s)	195, 255, 276, 399, 402, 418, 447
Sau3AI	GATC	3 cut(s)	74, 167, 428
Sau96I	GGNCC	3 cut(s)	94, 150, 340
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	4 cut(s)	68, 128, 209, 210
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	4 cut(s)	140, 231, 389, 458
SfaNI	GCATC	2 cut(s)	22, 317
SinI	GGWCC	2 cut(s)	94, 340
SmaI	CCCGGG	1 cut(s)	210
Sse9I	AATT	5 cut(s)	86, 214, 239, 357, 366
SspMI	CTAG	1 cut(s)	9
SstI	GAGCTC	1 cut(s)	140
StyD4I	CCNGG	4 cut(s)	66, 126, 207, 208
StyI	CCWWGG	3 cut(s)	8, 146, 303
TaqI	TCGA	4 cut(s)	16, 24, 134, 237
TaqII	GACCGA	1 cut(s)	328
TasI	AATT	5 cut(s)	86, 214, 239, 357, 366
TauI	GCSGC	7 cut(s)	197, 257, 278, 401, 404, 420, 449
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TspDTI	ATGAA	4 cut(s)	42, 172, 239, 254
TspGWI	ACGGA	3 cut(s)	87, 335, 448
TspMI	CCCGGG	1 cut(s)	208
Van91I	CCANNNNNTGG	1 cut(s)	147
VpaK11BI	GGWCC	2 cut(s)	94, 340
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XmaI	CCCGGG	1 cut(s)	208
XmaJI	CCTAGG	1 cut(s)	8
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.