RLG00000011983

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002523
Physical Location & Seq
Reverse (-)
14338920 .. 14341028
2109 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011983

Sequence Viewer

Length: 969 bp
ATGGCGGTTTGCAAACAGAGCCTAATCGGAATCGGACCACTGAGAGTCCTCTGCGGCGTCAACGTTGAACCAACACTCTCGCGGGTTGCTCAAATGGAGGATGCCCAAGAAGTATCTGAGACAATGTCGGAGGGATCATCCGAAAAGATACAGGAAACTCGCGATGAAATGCTCTCCAGGCACAGGAAAGAGACTTCAAAGTTGCAGGACAAGGAAATTCAATTGAAAAAGGCTGCAGCAAAAGGTAGCAAGGCTGACCAAAAAGCTAAGAAAAGGCAGGTGGAGGAAGAGATTTCTCGACTTTCTGCTGAGCTTAAAGAGAAACAAGCCGAAGAACTTGCATCATTAGGCTATAGCAGCACTACCAATGGAGGTGAAAGGAGTAATCTGGATACTTTAGTGAAGGCCATAGCTGGTGTTTCTGTAAGCAGTCAACCTGAGAATGCAAAGCCTAGCAAGAGTTCAAAGAGAAAAGTGAAAAGGGCTCAGGAGGATGCAGCAAGGGAGCAGAGAATTCAAGAAGAGCAGAGCAACTTAGTAAGCGATCGAATGGTTGAAGATGAAAAACTAGGGAAAAAGCTTGAACCCATTGGTTTGACAATTAATGAGATAAAGCCTGATGGTCATTGCCTCTACCGCGCTATCCAGGATCAGCTGGCTCACCTTTCTGGAGACAATCAAGGAGATGGTGATCCTGATGATTCCCTTGCTGAAAGGTTTGAGAATTACTGTAAGGAAGTGGAGTCAACGGCAGCATGGGGAGGACAGCTAGAGCTTGGGGCTCTAACTCACTGCCTTAAAAAGCCAATCAAGGTATACTCAGGATCATTCCCTGATGTGGAGATGGGTAAGGAGTACAAATCTGAGAGTGGAAATGGTTTTGGTTCTTCTGGTTCGAGTATTATGTTGTCATATCATAAGCACGCATTCGGGCTTGGTGAGCACTATAATTCTGTGGTCCCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

323

Amino Acids

35.31

Weight (kDa)

5.8

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 239 - 316 2.5e-17 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 268
Acc36I ACCTGC 1 cut(s) 268
AccI GTMKAC 1 cut(s) 816
AccII CGCG 3 cut(s) 82, 162, 639
AciI CCGC 4 cut(s) 5, 54, 82, 637
AclI AACGTT 1 cut(s) 63
AclWI GGATC 4 cut(s) 142, 657, 686, 832
AcsI RAATTY 2 cut(s) 216, 513
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 857
AfiI CCNNNNNNNGG 2 cut(s) 183, 838
AgsI TTSAA 8 cut(s) 68, 198, 221, 226, 465, 518, 557, 584
AjnI CCWGG 2 cut(s) 176, 645
AluBI AGCT 7 cut(s) 266, 313, 413, 580, 655, 769, 775
AluI AGCT 7 cut(s) 266, 313, 413, 580, 655, 769, 775
Alw21I GWGCWC 1 cut(s) 945
Alw26I GTCTC 3 cut(s) 113, 185, 666
AlwI GGATC 4 cut(s) 142, 657, 686, 832
AoxI GGCC 1 cut(s) 405
ApeKI GCWGC 5 cut(s) 233, 236, 357, 497, 752
ApoI RAATTY 2 cut(s) 216, 513
AseI ATTAAT 1 cut(s) 603
AspLEI GCGC 1 cut(s) 641
AspS9I GGNCC 2 cut(s) 35, 958
AsuHPI GGTGA 4 cut(s) 386, 653, 701, 950
AvaII GGWCC 2 cut(s) 35, 958
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BanII GRGCYC 2 cut(s) 487, 784
Bbv12I GWGCWC 1 cut(s) 945
BbvI GCAGC 5 cut(s) 220, 248, 369, 509, 764
BccI CCATC 3 cut(s) 614, 680, 838
BceAI ACGGC 1 cut(s) 765
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BciT130I CCWGG 2 cut(s) 178, 647
BciVI GTATCC 1 cut(s) 385
BcoDI GTCTC 3 cut(s) 113, 185, 666
BfaI CTAG 3 cut(s) 453, 569, 770
BfmI CTRYAG 2 cut(s) 234, 352
BfuAI ACCTGC 1 cut(s) 268
BfuI GTATCC 1 cut(s) 385
BisI GCNGC 6 cut(s) 55, 234, 237, 358, 498, 753
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 6 cut(s) 56, 235, 238, 359, 499, 754
Bme1390I CCNGG 2 cut(s) 178, 647
Bme18I GGWCC 2 cut(s) 35, 958
BmgT120I GGNCC 2 cut(s) 35, 958
BmiI GGNNCC 1 cut(s) 960
BmrFI CCNGG 2 cut(s) 178, 647
BmsI GCATC 3 cut(s) 91, 350, 484
BpmI CTGGAG 2 cut(s) 160, 690
Bpu10I CCTNAGC 1 cut(s) 486
Bpu1102I GCTNAGC 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 690
BsaHI GRCGYC 1 cut(s) 57
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 838
Bse3DI GCAATG 1 cut(s) 625
Bse8I GATNNNNATC 1 cut(s) 690
BseBI CCWGG 2 cut(s) 178, 647
BseGI GGATG 3 cut(s) 106, 137, 499
BseJI GATNNNNATC 1 cut(s) 690
BseLI CCNNNNNNNGG 2 cut(s) 183, 838
BseMI GCAATG 1 cut(s) 625
BseMII CTCAG 7 cut(s) 32, 108, 300, 429, 500, 834, 855
BseXI GCAGC 5 cut(s) 220, 248, 369, 509, 764
Bsh1236I CGCG 3 cut(s) 82, 162, 639
Bsh1285I CGRYCG 1 cut(s) 547
BshFI GGCC 1 cut(s) 407
BsiEI CGRYCG 1 cut(s) 547
BsiHKAI GWGCWC 1 cut(s) 945
BslFI GGGAC 1 cut(s) 944
BslI CCNNNNNNNGG 2 cut(s) 183, 838
BsmAI GTCTC 3 cut(s) 113, 185, 666
BsmFI GGGAC 1 cut(s) 944
BsmI GAATGC 2 cut(s) 448, 926
BsnI GGCC 1 cut(s) 407
Bsp1286I GDGCHC 3 cut(s) 487, 784, 945
Bsp143I GATC 5 cut(s) 134, 544, 649, 691, 824
Bsp1720I GCTNAGC 1 cut(s) 309
Bsp68I TCGCGA 1 cut(s) 162
BspACI CCGC 4 cut(s) 5, 54, 82, 637
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 7 cut(s) 33, 109, 301, 430, 499, 833, 856
BspFNI CGCG 3 cut(s) 82, 162, 639
BspLI GGNNCC 1 cut(s) 960
BspMAI CTGCAG 1 cut(s) 238
BspMI ACCTGC 1 cut(s) 268
BspPI GGATC 4 cut(s) 142, 657, 686, 832
BspQI GCTCTTC 1 cut(s) 516
BsrDI GCAATG 1 cut(s) 625
BssMI GATC 5 cut(s) 134, 544, 649, 691, 824
BssNAI GTATAC 1 cut(s) 817
BssNI GRCGYC 1 cut(s) 57
Bst1107I GTATAC 1 cut(s) 817
Bst2UI CCWGG 2 cut(s) 178, 647
Bst4CI ACNGT 1 cut(s) 731
Bst6I CTCTTC 2 cut(s) 282, 516
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 657, 924
BstDEI CTNAG 9 cut(s) 41, 117, 267, 309, 438, 486, 535, 820, 864
BstF5I GGATG 3 cut(s) 106, 137, 499
BstFNI CGCG 3 cut(s) 82, 162, 639
BstHHI GCGC 1 cut(s) 641
BstKTI GATC 5 cut(s) 137, 547, 652, 694, 827
BstMAI GTCTC 3 cut(s) 113, 185, 666
BstMBI GATC 5 cut(s) 134, 544, 649, 691, 824
BstMCI CGRYCG 1 cut(s) 547
BstMWI GCNNNNNNNGC 5 cut(s) 18, 178, 357, 636, 940
BstNI CCWGG 2 cut(s) 178, 647
BstSCI CCNGG 2 cut(s) 176, 645
BstSFI CTRYAG 2 cut(s) 234, 352
BstUI CGCG 3 cut(s) 82, 162, 639
BstV1I GCAGC 5 cut(s) 220, 248, 369, 509, 764
BstZ17I GTATAC 1 cut(s) 817
BsuI GTATCC 1 cut(s) 385
BsuRI GGCC 1 cut(s) 407
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 3 cut(s) 106, 137, 499
BtsI GCAGTG 1 cut(s) 790
BtsIMutI CAGTG 2 cut(s) 38, 790
BtuMI TCGCGA 1 cut(s) 162
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 2 cut(s) 657, 924
CfoI GCGC 1 cut(s) 641
Cfr13I GGNCC 2 cut(s) 35, 958
CseI GACGC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 856
CviAII CATG 1 cut(s) 756
CviQI GTAC 1 cut(s) 856
DdeI CTNAG 9 cut(s) 41, 117, 267, 309, 438, 486, 535, 820, 864
DpnI GATC 5 cut(s) 136, 546, 651, 693, 826
DpnII GATC 5 cut(s) 134, 544, 649, 691, 824
Eam1104I CTCTTC 2 cut(s) 282, 516
EarI CTCTTC 2 cut(s) 282, 516
Eco24I GRGCYC 2 cut(s) 487, 784
Eco47I GGWCC 2 cut(s) 35, 958
EcoRI GAATTC 1 cut(s) 513
EcoRII CCWGG 2 cut(s) 176, 645
EcoT38I GRGCYC 2 cut(s) 487, 784
FaeI CATG 1 cut(s) 759
FaiI YATR 9 cut(s) 354, 410, 757, 817, 905, 913, 918, 948, 967
FaqI GGGAC 1 cut(s) 944
FatI CATG 1 cut(s) 755
FauI CCCGC 1 cut(s) 75
FblI GTMKAC 1 cut(s) 816
Fnu4HI GCNGC 6 cut(s) 55, 234, 237, 358, 498, 753
FokI GGATG 3 cut(s) 113, 124, 506
FriOI GRGCYC 2 cut(s) 487, 784
Fsp4HI GCNGC 6 cut(s) 55, 234, 237, 358, 498, 753
FspBI CTAG 3 cut(s) 453, 569, 770
GlaI GCGC 1 cut(s) 640
GluI GCNGC 6 cut(s) 55, 234, 237, 358, 498, 753
GsuI CTGGAG 2 cut(s) 160, 690
HaeIII GGCC 1 cut(s) 407
HgaI GACGC 1 cut(s) 46
HhaI GCGC 1 cut(s) 641
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 1 cut(s) 759
Hin6I GCGC 1 cut(s) 639
HinP1I GCGC 1 cut(s) 639
HincII GTYRAC 3 cut(s) 61, 434, 747
HindII GTYRAC 3 cut(s) 61, 434, 747
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 4 cut(s) 30, 45, 701, 743
HphI GGTGA 4 cut(s) 386, 653, 701, 950
Hpy166II GTNNAC 4 cut(s) 61, 434, 747, 817
Hpy188I TCNGA 6 cut(s) 29, 35, 118, 130, 142, 865
Hpy188III TCNNGA 8 cut(s) 161, 297, 389, 488, 518, 669, 695, 822
Hpy8I GTNNAC 4 cut(s) 61, 434, 747, 817
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 1 cut(s) 731
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 6 cut(s) 12, 205, 236, 341, 446, 497
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 178, 357, 636, 940
HpyF3I CTNAG 9 cut(s) 41, 117, 267, 309, 438, 486, 535, 820, 864
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 1 cut(s) 759
HspAI GCGC 1 cut(s) 639
Kzo9I GATC 5 cut(s) 134, 544, 649, 691, 824
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 1 cut(s) 505
Lsp1109I GCAGC 5 cut(s) 220, 248, 369, 509, 764
LweI GCATC 3 cut(s) 91, 350, 484
MaeI CTAG 3 cut(s) 453, 569, 770
MaeII ACGT 1 cut(s) 63
MalI GATC 5 cut(s) 136, 546, 651, 693, 826
MboI GATC 5 cut(s) 134, 544, 649, 691, 824
MboII GAAGA 5 cut(s) 299, 344, 533, 569, 879
MfeI CAATTG 1 cut(s) 221
MhlI GDGCHC 3 cut(s) 487, 784, 945
MluCI AATT 6 cut(s) 216, 221, 513, 600, 724, 949
MlyI GAGTC 2 cut(s) 54, 752
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 8 cut(s) 59, 91, 124, 277, 365, 484, 641, 755
MseI TTAA 3 cut(s) 315, 603, 798
MspA1I CMGCKG 1 cut(s) 655
MspR9I CCNGG 2 cut(s) 178, 647
MunI CAATTG 1 cut(s) 221
Mva1269I GAATGC 2 cut(s) 448, 926
MvaI CCWGG 2 cut(s) 178, 647
MvnI CGCG 3 cut(s) 82, 162, 639
MwoI GCNNNNNNNGC 5 cut(s) 18, 178, 357, 636, 940
NdeII GATC 5 cut(s) 134, 544, 649, 691, 824
NlaIII CATG 1 cut(s) 759
NlaIV GGNNCC 1 cut(s) 960
NruI TCGCGA 1 cut(s) 162
PaqCI CACCTGC 1 cut(s) 268
PciSI GCTCTTC 1 cut(s) 516
PctI GAATGC 2 cut(s) 448, 926
PfeI GAWTC 2 cut(s) 30, 701
PflFI GACNNNGTC 1 cut(s) 124
PfoI TCCNGGA 1 cut(s) 645
PkrI GCNGC 6 cut(s) 56, 235, 238, 359, 499, 754
Ple19I CGATCG 1 cut(s) 547
PleI GAGTC 2 cut(s) 53, 751
PpsI GAGTC 2 cut(s) 53, 751
PshBI ATTAAT 1 cut(s) 603
Psp1406I AACGTT 1 cut(s) 63
Psp6I CCWGG 2 cut(s) 176, 645
PspGI CCWGG 2 cut(s) 176, 645
PspN4I GGNNCC 1 cut(s) 960
PspPI GGNCC 2 cut(s) 35, 958
PstI CTGCAG 1 cut(s) 238
PsyI GACNNNGTC 1 cut(s) 124
PvuI CGATCG 1 cut(s) 547
PvuII CAGCTG 1 cut(s) 655
RruI TCGCGA 1 cut(s) 162
RsaI GTAC 1 cut(s) 857
RsaNI GTAC 1 cut(s) 856
SapI GCTCTTC 1 cut(s) 516
SaqAI TTAA 3 cut(s) 315, 603, 798
SatI GCNGC 6 cut(s) 55, 234, 237, 358, 498, 753
Sau3AI GATC 5 cut(s) 134, 544, 649, 691, 824
Sau96I GGNCC 2 cut(s) 35, 958
SchI GAGTC 2 cut(s) 54, 752
ScrFI CCNGG 2 cut(s) 178, 647
SduI GDGCHC 3 cut(s) 487, 784, 945
SfaNI GCATC 3 cut(s) 91, 350, 484
SfcI CTRYAG 2 cut(s) 234, 352
SinI GGWCC 2 cut(s) 35, 958
Sse9I AATT 6 cut(s) 216, 221, 513, 600, 724, 949
SsiI CCGC 4 cut(s) 5, 54, 82, 637
SspMI CTAG 3 cut(s) 453, 569, 770
StyD4I CCNGG 2 cut(s) 176, 645
TaaI ACNGT 1 cut(s) 731
TaiI ACGT 1 cut(s) 66
TaqI TCGA 3 cut(s) 298, 547, 896
TasI AATT 6 cut(s) 216, 221, 513, 600, 724, 949
TatI WGTACW 1 cut(s) 855
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 2 cut(s) 30, 701
Tru1I TTAA 3 cut(s) 315, 603, 798
Tru9I TTAA 3 cut(s) 315, 603, 798
TscAI CASTG 2 cut(s) 45, 797
TseI GCWGC 5 cut(s) 233, 236, 357, 497, 752
TspDTI ATGAA 2 cut(s) 180, 576
TspRI CASTG 2 cut(s) 45, 797
Tth111I GACNNNGTC 1 cut(s) 124
VpaK11BI GGWCC 2 cut(s) 35, 958
VspI ATTAAT 1 cut(s) 603
XapI RAATTY 2 cut(s) 216, 513
XmiI GTMKAC 1 cut(s) 816
XspI CTAG 3 cut(s) 453, 569, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.