Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002523

Physical Location & Seq

Genomic Coordinates Reverse (-)

88532701 .. 88536802

Gene Structure 4102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35676

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGGGCCGAGGAAAGCTGGAGATCCGCCACAATATTCATCAACACCGCCGCGTCTGCCTGACCCAGGTAATTTGAGGATGAAGCTCCAAGTCGAGTTAGAGGTGACAGCGGCGGGATTTTGTGAGACAGCGGCGGAATTCCGTGAACTTCACAAATCTATGGCGTCGATGGCGACGGAACAGACTTCGTTCCAGTCTGAGATATTAAACGAGTTGAGACAACTGAGACTGGGGCGAGCAGCTCAGGTGATTGAGCCTTCGGTGCTTCAAATCAATTCTCAGTCGACTTCTCCAGTACCGATCATATCTCCATCAGTGACTCAACCTATCTCTCAGGTGCTGCAATTCGAGACCATGGATTCCTACGGACCGCAACAACAGCAATACATGAGGCCGCCGCCGCCACCACCACCACTACCGGCCATTTCGGTTCCCTACCACTATCAGCAGCAAGGCGCGTGGTACTTGAACCAGTACCGGTACCACTCATCAGAGTCCCCGTCGCCTCCTCCTCCTCATTATGCGCACCATTATAATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

20.19

Weight (kDa)

6.28

Isoelectric Point (pI)

86.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62940 AT3G62940 AT3G62940 AT3G62940 AT3G62940
fragaria_vesca	FvH4_2g14201 FvH4_2g14201 FvH4_2g14201
malus_domestica	MD03G1278200.v1.1 MD11G1300200.v1.1
prunus_persica	Prupe.2G090200_v2.0.a1 Prupe.2G090200_v2.0.a1 Prupe.8G254400_v2.0.a1 Prupe.8G254400_v2.0.a1 Prupe.8G254400_v2.0.a1
pyrus_communis	pycom03g22160 pycom11g26360
rosa_chinensis	RchiOBHm_Chr3g0496291 RchiOBHm_Chr5g0001231 RchiOBHm_Chr5g0082561 RchiOBHm_Chr6g0247511 RchiOBHm_Chr6g0292881
rosa_laevigata	RLG00000011983 RLG00000015114 RLG00000015120
rosa_multiflora	Rmu_sc0000147.1_g000079 Rmu_sc0000391.1_g000019 Rmu_sc0000391.1_g000020 Rmu_sc0000639.1_g000016 Rmu_ssc0000454.1_g000017
rosa_roxburghii	Rroxscaffold_4G00287890 Rroxscaffold_6G00416780 Rroxscaffold_7G00174620 Rroxscaffold_7G00186560
rosa_rugosa	Rorug06G0230500
rosa_samantha	Rh3CG361400 Rh6AG343800 Rh6BG351000 Rh6CG358000 Rh6DG343900
rosa_wichuraiana	Rw6G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	534
Acc16I	TGCGCA	1 cut(s)	525
Acc65I	GGTACC	1 cut(s)	480
AccB1I	GGYRCC	1 cut(s)	480
AccI	GTMKAC	1 cut(s)	284
AccII	CGCG	2 cut(s)	52, 458
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	137
AcyI	GRCGYC	1 cut(s)	164
AfaI	GTAC	4 cut(s)	297, 464, 476, 482
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgeI	ACCGGT	1 cut(s)	477
AgsI	TTSAA	2 cut(s)	269, 469
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	3 cut(s)	17, 85, 242
AluI	AGCT	3 cut(s)	17, 85, 242
Alw26I	GTCTC	4 cut(s)	119, 211, 220, 344
AlwI	GGATC	1 cut(s)	17
AlwNI	CAGNNNCTG	1 cut(s)	340
AoxI	GGCC	3 cut(s)	5, 392, 420
ApeKI	GCWGC	3 cut(s)	239, 340, 448
ApoI	RAATTY	1 cut(s)	137
AsiGI	ACCGGT	1 cut(s)	477
Asp718I	GGTACC	1 cut(s)	480
AspLEI	GCGC	2 cut(s)	458, 526
AspS9I	GGNCC	2 cut(s)	5, 368
AsuHPI	GGTGA	2 cut(s)	115, 259
AvaII	GGWCC	1 cut(s)	368
BanI	GGYRCC	1 cut(s)	480
BbvI	GCAGC	3 cut(s)	251, 327, 460
BccI	CCATC	2 cut(s)	163, 319
BciT130I	CCWGG	1 cut(s)	66
BcoDI	GTCTC	4 cut(s)	119, 211, 220, 344
BisI	GCNGC	9 cut(s)	50, 111, 132, 240, 341, 395, 398, 401, 449
BlsI	GCNGC	9 cut(s)	51, 112, 133, 241, 342, 396, 399, 402, 450
Bme1390I	CCNGG	1 cut(s)	66
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	2 cut(s)	5, 368
BmiI	GGNNCC	3 cut(s)	6, 432, 482
BmrFI	CCNGG	1 cut(s)	66
BmrI	ACTGGG	1 cut(s)	239
BmuI	ACTGGG	1 cut(s)	239
BpmI	CTGGAG	2 cut(s)	39, 276
Bpu10I	CCTNAGC	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	3 cut(s)	8, 64, 354
BsaWI	WCCGGW	1 cut(s)	477
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	2 cut(s)	418, 477
Bse1I	ACTGG	4 cut(s)	193, 234, 293, 472
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	3 cut(s)	8, 64, 354
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	5 cut(s)	189, 215, 257, 293, 347
BseNI	ACTGG	4 cut(s)	193, 234, 293, 472
BseRI	GAGGAG	3 cut(s)	498, 501, 504
BseXI	GCAGC	3 cut(s)	251, 327, 460
Bsh1236I	CGCG	2 cut(s)	52, 458
BshFI	GGCC	3 cut(s)	7, 394, 422
BshNI	GGYRCC	1 cut(s)	480
BshTI	ACCGGT	1 cut(s)	477
BsiSI	CCGG	2 cut(s)	419, 478
BslFI	GGGAC	1 cut(s)	481
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	4 cut(s)	119, 211, 220, 344
BsmFI	GGGAC	1 cut(s)	481
BsnI	GGCC	3 cut(s)	7, 394, 422
Bso31I	GGTCTC	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	22, 300
Bsp19I	CCATGG	1 cut(s)	354
BspANI	GGCC	3 cut(s)	7, 394, 422
BspCNI	CTCAG	5 cut(s)	190, 216, 256, 292, 346
BspFNI	CGCG	2 cut(s)	52, 458
BspLI	GGNNCC	3 cut(s)	6, 432, 482
BspPI	GGATC	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	480
BspTNI	GGTCTC	1 cut(s)	344
BsrFI	RCCGGY	2 cut(s)	418, 477
BsrI	ACTGG	4 cut(s)	193, 234, 293, 472
BssAI	RCCGGY	2 cut(s)	418, 477
BssECI	CCNNGG	3 cut(s)	8, 64, 354
BssMI	GATC	2 cut(s)	22, 300
BssNI	GRCGYC	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	66
BstACI	GRCGYC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	5 cut(s)	198, 224, 243, 279, 333
BstDSI	CCRYGG	1 cut(s)	354
BstENI	CCTNNNNNAGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	84
BstFNI	CGCG	2 cut(s)	52, 458
BstHHI	GCGC	2 cut(s)	458, 526
BstKTI	GATC	2 cut(s)	25, 303
BstMAI	GTCTC	4 cut(s)	119, 211, 220, 344
BstMBI	GATC	2 cut(s)	22, 300
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 170, 262, 379, 400
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstUI	CGCG	2 cut(s)	52, 458
BstV1I	GCAGC	3 cut(s)	251, 327, 460
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	3 cut(s)	7, 394, 422
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	1 cut(s)	237
CaiI	CAGNNNCTG	1 cut(s)	340
CfoI	GCGC	2 cut(s)	458, 526
Cfr10I	RCCGGY	2 cut(s)	418, 477
Cfr13I	GGNCC	2 cut(s)	5, 368
CpoI	CGGWCCG	1 cut(s)	368
CseI	GACGC	2 cut(s)	41, 153
Csp6I	GTAC	4 cut(s)	296, 463, 475, 481
CspAI	ACCGGT	1 cut(s)	477
CspCI	CAANNNNNGTGG	2 cut(s)	440, 475
CspI	CGGWCCG	1 cut(s)	368
CviAII	CATG	2 cut(s)	355, 388
CviJI	RGCY	7 cut(s)	7, 17, 85, 242, 256, 394, 422
CviKI_1	RGCY	7 cut(s)	7, 17, 85, 242, 256, 394, 422
CviQI	GTAC	4 cut(s)	296, 463, 475, 481
DdeI	CTNAG	5 cut(s)	198, 224, 243, 279, 333
DpnI	GATC	2 cut(s)	24, 302
DpnII	GATC	2 cut(s)	22, 300
EaeI	YGGCCR	1 cut(s)	420
EciI	GGCGGA	2 cut(s)	15, 149
Eco130I	CCWWGG	1 cut(s)	354
Eco31I	GGTCTC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	368
EcoNI	CCTNNNNNAGG	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	2 cut(s)	358, 391
FaiI	YATR	6 cut(s)	161, 305, 356, 389, 522, 534
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	2 cut(s)	354, 387
FauI	CCCGC	1 cut(s)	106
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	9 cut(s)	50, 111, 132, 240, 341, 395, 398, 401, 449
FokI	GGATG	1 cut(s)	91
Fsp4HI	GCNGC	9 cut(s)	50, 111, 132, 240, 341, 395, 398, 401, 449
FspAI	RTGCGCAY	1 cut(s)	525
FspI	TGCGCA	1 cut(s)	525
GlaI	GCGC	2 cut(s)	457, 525
GluI	GCNGC	9 cut(s)	50, 111, 132, 240, 341, 395, 398, 401, 449
GsuI	CTGGAG	2 cut(s)	39, 276
HaeIII	GGCC	3 cut(s)	7, 394, 422
HapII	CCGG	2 cut(s)	419, 478
HgaI	GACGC	2 cut(s)	41, 153
HhaI	GCGC	2 cut(s)	458, 526
Hin1I	GRCGYC	1 cut(s)	164
Hin1II	CATG	2 cut(s)	358, 391
Hin6I	GCGC	2 cut(s)	456, 524
HinP1I	GCGC	2 cut(s)	456, 524
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HinfI	GANTC	3 cut(s)	319, 359, 494
HpaII	CCGG	2 cut(s)	419, 478
HphI	GGTGA	2 cut(s)	115, 259
Hpy166II	GTNNAC	2 cut(s)	146, 285
Hpy188I	TCNGA	2 cut(s)	199, 493
Hpy188III	TCNNGA	1 cut(s)	349
Hpy8I	GTNNAC	2 cut(s)	146, 285
Hpy99I	CGWCG	3 cut(s)	169, 178, 505
HpyAV	CCTTC	1 cut(s)	267
HpyCH4V	TGCA	1 cut(s)	343
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 170, 262, 379, 400
HpyF3I	CTNAG	5 cut(s)	198, 224, 243, 279, 333
Hsp92I	GRCGYC	1 cut(s)	164
Hsp92II	CATG	2 cut(s)	358, 391
HspAI	GCGC	2 cut(s)	456, 524
KpnI	GGTACC	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	22, 300
LmnI	GCTCC	1 cut(s)	90
Lsp1109I	GCAGC	3 cut(s)	251, 327, 460
MaeIII	GTNAC	2 cut(s)	103, 316
MalI	GATC	2 cut(s)	24, 302
MboI	GATC	2 cut(s)	22, 300
MflI	RGATCY	1 cut(s)	22
MluCI	AATT	4 cut(s)	70, 137, 274, 344
MlyI	GAGTC	2 cut(s)	313, 503
MnlI	CCTC	8 cut(s)	3, 69, 94, 384, 516, 519, 522, 525
MseI	TTAA	2 cut(s)	206, 541
MspA1I	CMGCKG	2 cut(s)	110, 131
MspI	CCGG	2 cut(s)	419, 478
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
MvnI	CGCG	2 cut(s)	52, 458
MwoI	GCNNNNNNNGC	5 cut(s)	55, 170, 262, 379, 400
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	2 cut(s)	22, 300
NlaIII	CATG	2 cut(s)	358, 391
NlaIV	GGNNCC	3 cut(s)	6, 432, 482
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	2 cut(s)	103, 316
NsbI	TGCGCA	1 cut(s)	525
PfeI	GAWTC	1 cut(s)	359
PinAI	ACCGGT	1 cut(s)	477
PkrI	GCNGC	9 cut(s)	51, 112, 133, 241, 342, 396, 399, 402, 450
PleI	GAGTC	2 cut(s)	313, 502
PpsI	GAGTC	2 cut(s)	313, 502
PsiI	TTATAA	1 cut(s)	534
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	3 cut(s)	6, 432, 482
PspPI	GGNCC	2 cut(s)	5, 368
PstNI	CAGNNNCTG	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	4 cut(s)	297, 464, 476, 482
RsaNI	GTAC	4 cut(s)	296, 463, 475, 481
Rsr2I	CGGWCCG	1 cut(s)	368
RsrII	CGGWCCG	1 cut(s)	368
SalI	GTCGAC	1 cut(s)	283
SaqAI	TTAA	2 cut(s)	206, 541
SatI	GCNGC	9 cut(s)	50, 111, 132, 240, 341, 395, 398, 401, 449
Sau3AI	GATC	2 cut(s)	22, 300
Sau96I	GGNCC	2 cut(s)	5, 368
SchI	GAGTC	2 cut(s)	313, 503
ScrFI	CCNGG	1 cut(s)	66
SetI	ASST	8 cut(s)	19, 70, 87, 105, 244, 249, 328, 339
SinI	GGWCC	1 cut(s)	368
Sse9I	AATT	4 cut(s)	70, 137, 274, 344
SspI	AATATT	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	1 cut(s)	354
TaqI	TCGA	4 cut(s)	93, 167, 284, 348
TasI	AATT	4 cut(s)	70, 137, 274, 344
TauI	GCSGC	6 cut(s)	52, 113, 134, 397, 400, 403
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	2 cut(s)	206, 541
Tru9I	TTAA	2 cut(s)	206, 541
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	2 cut(s)	103, 316
TseI	GCWGC	3 cut(s)	239, 340, 448
Tsp45I	GTSAC	2 cut(s)	103, 316
TspDTI	ATGAA	2 cut(s)	27, 95
TspGWI	ACGGA	3 cut(s)	131, 191, 381
TspRI	CASTG	1 cut(s)	321
VpaK11BI	GGWCC	1 cut(s)	368
XagI	CCTNNNNNAGG	1 cut(s)	63
XapI	RAATTY	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.