Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002523

Physical Location & Seq

Genomic Coordinates Forward (+)

28934349 .. 28936317

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g26360.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAGATTTTTGGACGCCGTCGACGGCAAAGGAGGACTCTTGGGTAAGGTTGTTTCAATGGAGGATGCACAAGAAGTATCTGATACAATGTCAGACAAAGCTTCTGAGAATACGCAGGAAACTCGCGATGAAATGCTTTCTAGGCACAGGAAAGAGATATCAAAACTTCAGGACAAGGAAACTGGAATGAAAAAGGCAGCTGCCAAAGGGAGCAAGGCTGAACAAAAAACTAAGAAAAAGCAGGTGGAGGAAGAGATTACTCAGCTTTCTGCTAATCTCAAAGAAAAACAGGCCGCAGAACTTGCTTCCTTAGGCTATAGCGCTAGTAACGGAAATGAGAAGAACAAACTCGACACTTTAGTCAAGGCTATAGCTGGTGTTTCTGTCACCAGTCAACCTGAACATGCAAAGCCCAGCAAGAGTTCAAAGAGGCGAGAAAAGAGGGCTCAGCAAGATGCAGCTAGGGAGCAAAGAATTCAAGAAGAGCAGAGCAACCTAGTAAGTGATCGAGTGATTGAGGATGAGAAACTAGAGAAAAAGCTCGAACCCTTTGGCTTGACCATTAAAGAAATAAAGCCCGATGGACATTGCCTCTACCGAGCTATCCAGGATCAGCTGGCCCACCTTTCAGGAGGTTCATCACCTTACACGTACCAACAGCTTCGAGAAATGGTGGCTGCTTATATGAGGAAGCATGCATCTGATTTTCTCCCATTTTTCTTATCGGAGAATCCGGCAGATGGAGATTCTGATGATTCACTTGCAGCGAGGTTTGAGAACTACTGTAAAGAAGTGGAGTCAACAGCAGCATGGGGGGGACAGCTAGAGCTTGGTGCCTTAACTCACTGCCTCAAAAAGCCTATCAAGATATACTCAGGATCGATCCCTGATGTGGAGATGGGCAAGGAGTACAAATCCGATAGCGCGACTGGTTCTTCCGATTCGCGGATTATGTTGTCATACCATAAGCATGCATTTGGGCTTGGTGAGCACTATAATTCTGTAGTTCCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

339

Amino Acids

37.48

Weight (kDa)

6.35

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62940 AT3G62940 AT3G62940 AT3G62940 AT3G62940
fragaria_vesca	FvH4_2g14201 FvH4_2g14201 FvH4_2g14201
malus_domestica	MD03G1278200.v1.1 MD11G1300200.v1.1
prunus_persica	Prupe.2G090200_v2.0.a1 Prupe.2G090200_v2.0.a1 Prupe.8G254400_v2.0.a1 Prupe.8G254400_v2.0.a1 Prupe.8G254400_v2.0.a1
pyrus_communis	pycom03g22160 pycom11g26360
rosa_chinensis	RchiOBHm_Chr3g0496291 RchiOBHm_Chr5g0001231 RchiOBHm_Chr5g0082561 RchiOBHm_Chr6g0247511 RchiOBHm_Chr6g0292881
rosa_laevigata	RLG00000011983 RLG00000015114 RLG00000015120
rosa_multiflora	Rmu_sc0000147.1_g000079 Rmu_sc0000391.1_g000019 Rmu_sc0000391.1_g000020 Rmu_sc0000639.1_g000016 Rmu_ssc0000454.1_g000017
rosa_roxburghii	Rroxscaffold_4G00287890 Rroxscaffold_6G00416780 Rroxscaffold_7G00174620 Rroxscaffold_7G00186560
rosa_rugosa	Rorug06G0230500
rosa_samantha	Rh3CG361400 Rh6AG343800 Rh6BG351000 Rh6CG358000 Rh6DG343900
rosa_wichuraiana	Rw6G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	232
AasI	GACNNNNNNGTC	1 cut(s)	359
Acc36I	ACCTGC	1 cut(s)	232
AccB1I	GGYRCC	1 cut(s)	833
AccI	GTMKAC	1 cut(s)	21
AccII	CGCG	3 cut(s)	126, 926, 946
AciI	CCGC	2 cut(s)	294, 946
AclWI	GGATC	3 cut(s)	618, 877, 886
AcsI	RAATTY	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	2 cut(s)	653, 911
AfeI	AGCGCT	1 cut(s)	322
AfiI	CCNNNNNNNGG	3 cut(s)	740, 892, 945
AflIII	ACRYGT	1 cut(s)	648
AgsI	TTSAA	3 cut(s)	57, 426, 479
AjnI	CCWGG	1 cut(s)	606
Alw21I	GWGCWC	1 cut(s)	993
AlwI	GGATC	3 cut(s)	618, 877, 886
Aor51HI	AGCGCT	1 cut(s)	322
AoxI	GGCC	2 cut(s)	291, 618
ApeKI	GCWGC	6 cut(s)	197, 200, 458, 677, 764, 806
ApoI	RAATTY	1 cut(s)	474
AspLEI	GCGC	2 cut(s)	323, 926
AspS9I	GGNCC	1 cut(s)	619
AsuHPI	GGTGA	3 cut(s)	379, 633, 998
AxyI	CCTNAGG	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	833
BanII	GRGCYC	1 cut(s)	448
Bbv12I	GWGCWC	1 cut(s)	993
BbvI	GCAGC	6 cut(s)	187, 209, 470, 664, 776, 818
BccI	CCATC	3 cut(s)	575, 734, 892
BceAI	ACGGC	2 cut(s)	2, 40
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	1 cut(s)	608
BfaI	CTAG	6 cut(s)	141, 324, 462, 497, 530, 824
BfmI	CTRYAG	3 cut(s)	316, 369, 1002
BfoI	RGCGCY	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	232
BisI	GCNGC	7 cut(s)	198, 201, 294, 459, 678, 765, 807
BlpI	GCTNAGC	1 cut(s)	447
BlsI	GCNGC	7 cut(s)	199, 202, 295, 460, 679, 766, 808
Bme1390I	CCNGG	1 cut(s)	608
BmgT120I	GGNCC	1 cut(s)	619
BmiI	GGNNCC	1 cut(s)	835
BmrFI	CCNGG	1 cut(s)	608
BmsI	GCATC	3 cut(s)	55, 445, 707
Bpu1102I	GCTNAGC	1 cut(s)	447
Bsa29I	ATCGAT	1 cut(s)	881
BsaAI	YACGTR	1 cut(s)	651
BsaHI	GRCGYC	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	3 cut(s)	740, 892, 945
Bse1I	ACTGG	3 cut(s)	187, 390, 934
Bse21I	CCTNAGG	1 cut(s)	310
Bse3DI	GCAATG	1 cut(s)	586
BseBI	CCWGG	1 cut(s)	608
BseCI	ATCGAT	1 cut(s)	881
BseGI	GGATG	2 cut(s)	70, 526
BseLI	CCNNNNNNNGG	3 cut(s)	740, 892, 945
BseMI	GCAATG	1 cut(s)	586
BseMII	CTCAG	4 cut(s)	96, 275, 461, 888
BseNI	ACTGG	3 cut(s)	187, 390, 934
BseXI	GCAGC	6 cut(s)	187, 209, 470, 664, 776, 818
BseYI	CCCAGC	1 cut(s)	413
Bsh1236I	CGCG	3 cut(s)	126, 926, 946
BshFI	GGCC	2 cut(s)	293, 620
BshNI	GGYRCC	1 cut(s)	833
BshVI	ATCGAT	1 cut(s)	881
BsiHKAI	GWGCWC	1 cut(s)	993
BsiSI	CCGG	1 cut(s)	734
BslFI	GGGAC	1 cut(s)	831
BslI	CCNNNNNNNGG	3 cut(s)	740, 892, 945
BsmFI	GGGAC	1 cut(s)	831
BsnI	GGCC	2 cut(s)	293, 620
Bsp1286I	GDGCHC	2 cut(s)	448, 993
Bsp143I	GATC	4 cut(s)	505, 610, 878, 882
Bsp1720I	GCTNAGC	1 cut(s)	447
Bsp68I	TCGCGA	1 cut(s)	126
BspACI	CCGC	2 cut(s)	294, 946
BspANI	GGCC	2 cut(s)	293, 620
BspCNI	CTCAG	4 cut(s)	97, 274, 460, 887
BspDI	ATCGAT	1 cut(s)	881
BspFNI	CGCG	3 cut(s)	126, 926, 946
BspLI	GGNNCC	1 cut(s)	835
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	3 cut(s)	618, 877, 886
BspQI	GCTCTTC	1 cut(s)	477
BspT107I	GGYRCC	1 cut(s)	833
BsrDI	GCAATG	1 cut(s)	586
BsrI	ACTGG	3 cut(s)	187, 390, 934
BssMI	GATC	4 cut(s)	505, 610, 878, 882
BssNI	GRCGYC	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	608
Bst4CI	ACNGT	1 cut(s)	785
Bst6I	CTCTTC	2 cut(s)	246, 477
BstACI	GRCGYC	1 cut(s)	15
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstBAI	YACGTR	1 cut(s)	651
BstC8I	GCNNGC	3 cut(s)	618, 696, 972
BstDEI	CTNAG	6 cut(s)	105, 231, 261, 310, 447, 874
BstF5I	GGATG	2 cut(s)	70, 526
BstFNI	CGCG	3 cut(s)	126, 926, 946
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	2 cut(s)	323, 926
BstKTI	GATC	4 cut(s)	508, 613, 881, 885
BstMBI	GATC	4 cut(s)	505, 610, 878, 882
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 302, 988
BstNI	CCWGG	1 cut(s)	608
BstNSI	RCATGY	3 cut(s)	407, 698, 974
BstSCI	CCNGG	1 cut(s)	606
BstSFI	CTRYAG	3 cut(s)	316, 369, 1002
BstUI	CGCG	3 cut(s)	126, 926, 946
BstV1I	GCAGC	6 cut(s)	187, 209, 470, 664, 776, 818
Bsu15I	ATCGAT	1 cut(s)	881
Bsu36I	CCTNAGG	1 cut(s)	310
BsuRI	GGCC	2 cut(s)	293, 620
BsuTUI	ATCGAT	1 cut(s)	881
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	70, 526
BtsI	GCAGTG	1 cut(s)	844
BtsIMutI	CAGTG	1 cut(s)	844
BtuMI	TCGCGA	1 cut(s)	126
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	3 cut(s)	618, 696, 972
CfoI	GCGC	2 cut(s)	323, 926
Cfr13I	GGNCC	1 cut(s)	619
ClaI	ATCGAT	1 cut(s)	881
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	652, 910
CviAII	CATG	4 cut(s)	404, 695, 810, 971
CviQI	GTAC	2 cut(s)	652, 910
DdeI	CTNAG	6 cut(s)	105, 231, 261, 310, 447, 874
DpnI	GATC	4 cut(s)	507, 612, 880, 884
DpnII	GATC	4 cut(s)	505, 610, 878, 882
DrdI	GACNNNNNNGTC	1 cut(s)	359
DseDI	GACNNNNNNGTC	1 cut(s)	359
Eam1104I	CTCTTC	2 cut(s)	246, 477
EarI	CTCTTC	2 cut(s)	246, 477
Eco24I	GRGCYC	1 cut(s)	448
Eco32I	GATATC	1 cut(s)	159
Eco47III	AGCGCT	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	152
Eco81I	CCTNAGG	1 cut(s)	310
EcoRI	GAATTC	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	606
EcoRV	GATATC	1 cut(s)	159
EcoT22I	ATGCAT	2 cut(s)	700, 976
EcoT38I	GRGCYC	1 cut(s)	448
FaeI	CATG	4 cut(s)	407, 698, 813, 974
FaqI	GGGAC	1 cut(s)	831
FatI	CATG	4 cut(s)	403, 694, 809, 970
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	7 cut(s)	198, 201, 294, 459, 678, 765, 807
FokI	GGATG	2 cut(s)	77, 533
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	7 cut(s)	198, 201, 294, 459, 678, 765, 807
FspBI	CTAG	6 cut(s)	141, 324, 462, 497, 530, 824
GlaI	GCGC	2 cut(s)	322, 925
GluI	GCNGC	7 cut(s)	198, 201, 294, 459, 678, 765, 807
GsaI	CCCAGC	1 cut(s)	417
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	293, 620
HapII	CCGG	1 cut(s)	734
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	2 cut(s)	323, 926
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	4 cut(s)	407, 698, 813, 974
Hin6I	GCGC	2 cut(s)	321, 924
HinP1I	GCGC	2 cut(s)	321, 924
HincII	GTYRAC	3 cut(s)	22, 395, 801
HindII	GTYRAC	3 cut(s)	22, 395, 801
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	6 cut(s)	36, 730, 746, 755, 797, 941
HpaII	CCGG	1 cut(s)	734
HphI	GGTGA	3 cut(s)	379, 633, 998
Hpy166II	GTNNAC	3 cut(s)	22, 395, 801
Hpy188I	TCNGA	8 cut(s)	82, 94, 106, 703, 727, 751, 919, 940
Hpy188III	TCNNGA	7 cut(s)	125, 170, 479, 630, 665, 865, 876
Hpy8I	GTNNAC	3 cut(s)	22, 395, 801
Hpy99I	CGWCG	2 cut(s)	23, 26
HpyCH4III	ACNGT	1 cut(s)	785
HpyCH4IV	ACGT	1 cut(s)	650
HpyCH4V	TGCA	6 cut(s)	68, 407, 458, 698, 764, 974
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 302, 988
HpyF3I	CTNAG	6 cut(s)	105, 231, 261, 310, 447, 874
HpySE526I	ACGT	1 cut(s)	650
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	4 cut(s)	407, 698, 813, 974
HspAI	GCGC	2 cut(s)	321, 924
Kzo9I	GATC	4 cut(s)	505, 610, 878, 882
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	2 cut(s)	210, 466
Lsp1109I	GCAGC	6 cut(s)	187, 209, 470, 664, 776, 818
LweI	GCATC	3 cut(s)	55, 445, 707
MaeI	CTAG	6 cut(s)	141, 324, 462, 497, 530, 824
MaeII	ACGT	1 cut(s)	650
MaeIII	GTNAC	2 cut(s)	326, 385
MalI	GATC	4 cut(s)	507, 612, 880, 884
MboI	GATC	4 cut(s)	505, 610, 878, 882
MboII	GAAGA	4 cut(s)	263, 352, 494, 927
MhlI	GDGCHC	2 cut(s)	448, 993
MluCI	AATT	2 cut(s)	474, 997
MlyI	GAGTC	2 cut(s)	30, 806
Mph1103I	ATGCAT	2 cut(s)	700, 976
MseI	TTAA	2 cut(s)	564, 839
MslI	CAYNNNNRTG	1 cut(s)	969
MspA1I	CMGCKG	2 cut(s)	200, 616
MspI	CCGG	1 cut(s)	734
MspR9I	CCNGG	1 cut(s)	608
MvaI	CCWGG	1 cut(s)	608
MvnI	CGCG	3 cut(s)	126, 926, 946
MwoI	GCNNNNNNNGC	3 cut(s)	142, 302, 988
NdeII	GATC	4 cut(s)	505, 610, 878, 882
NlaIII	CATG	4 cut(s)	407, 698, 813, 974
NlaIV	GGNNCC	1 cut(s)	835
NmuCI	GTSAC	1 cut(s)	385
NruI	TCGCGA	1 cut(s)	126
NsiI	ATGCAT	2 cut(s)	700, 976
NspI	RCATGY	3 cut(s)	407, 698, 974
PaeI	GCATGC	2 cut(s)	698, 974
PaqCI	CACCTGC	1 cut(s)	232
PciSI	GCTCTTC	1 cut(s)	477
PfeI	GAWTC	4 cut(s)	730, 746, 755, 941
PflFI	GACNNNGTC	1 cut(s)	17
PfoI	TCCNGGA	1 cut(s)	606
PkrI	GCNGC	7 cut(s)	199, 202, 295, 460, 679, 766, 808
PleI	GAGTC	2 cut(s)	30, 805
PpsI	GAGTC	2 cut(s)	30, 805
Ppu21I	YACGTR	1 cut(s)	651
Psp6I	CCWGG	1 cut(s)	606
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	606
PspN4I	GGNNCC	1 cut(s)	835
PspPI	GGNCC	1 cut(s)	619
PsyI	GACNNNGTC	1 cut(s)	17
PvuII	CAGCTG	2 cut(s)	200, 616
RruI	TCGCGA	1 cut(s)	126
RsaI	GTAC	2 cut(s)	653, 911
RsaNI	GTAC	2 cut(s)	652, 910
RseI	CAYNNNNRTG	1 cut(s)	969
SalI	GTCGAC	1 cut(s)	20
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	2 cut(s)	564, 839
SatI	GCNGC	7 cut(s)	198, 201, 294, 459, 678, 765, 807
Sau3AI	GATC	4 cut(s)	505, 610, 878, 882
Sau96I	GGNCC	1 cut(s)	619
SchI	GAGTC	2 cut(s)	30, 806
ScrFI	CCNGG	1 cut(s)	608
SduI	GDGCHC	2 cut(s)	448, 993
SfaNI	GCATC	3 cut(s)	55, 445, 707
SfcI	CTRYAG	3 cut(s)	316, 369, 1002
SgrDI	CGTCGACG	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	969
SphI	GCATGC	2 cut(s)	698, 974
Sse9I	AATT	2 cut(s)	474, 997
SsiI	CCGC	2 cut(s)	294, 946
SspMI	CTAG	6 cut(s)	141, 324, 462, 497, 530, 824
StyD4I	CCNGG	1 cut(s)	606
TaaI	ACNGT	1 cut(s)	785
TaiI	ACGT	1 cut(s)	653
TaqI	TCGA	6 cut(s)	21, 351, 508, 543, 664, 881
TasI	AATT	2 cut(s)	474, 997
TatI	WGTACW	1 cut(s)	909
TauI	GCSGC	1 cut(s)	296
TfiI	GAWTC	4 cut(s)	730, 746, 755, 941
Tru1I	TTAA	2 cut(s)	564, 839
Tru9I	TTAA	2 cut(s)	564, 839
TscAI	CASTG	1 cut(s)	851
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	6 cut(s)	197, 200, 458, 677, 764, 806
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	3 cut(s)	144, 203, 627
TspGWI	ACGGA	1 cut(s)	345
TspRI	CASTG	1 cut(s)	851
Tth111I	GACNNNGTC	1 cut(s)	17
XapI	RAATTY	1 cut(s)	474
XceI	RCATGY	3 cut(s)	407, 698, 974
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	6 cut(s)	141, 324, 462, 497, 530, 824
Zsp2I	ATGCAT	2 cut(s)	700, 976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.