Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003276

Physical Location & Seq

Genomic Coordinates Reverse (-)

25593675 .. 25596164

Gene Structure 2490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1165400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAGTCCGAGGCTTCGGACGGGGAAAGGAAATTGCGGAAGAGGCGCAACGGGTGCGAATCGATAGAGGACACACTGACCAAGTGGAAGAACTACAATGAGAGGCTTGATTCTGGGAAAGATGGAGGGAAGAAGACTCGGGCTCCGGCGAAGGGCTCCAGAAAAGGCTGCATGAGGGGGAAAGGAGGGCCGGAGAACTCAGATTGTGTATTTAGGGGTGTTAGGCAGAGGACTTGGGGAAAATGGGTGGCGGAAATTCGAGAACCAATTCGAGCTAGAGCCGGTTCTGTACCTACGAAGAAGAATAGGCGTCTTTGGCTTGGTACTTTCCCTACAGCCTATGAAGCTGCTCTTGCTTATGATAAAGCTGCTAGAGCAATTTATGGTGCTTTGGCCCGGCTCAACTTCCCCGACAATGCTGTGGACTCGAAGGACTACTACTCTAATTCTGTGTCATCTAAAACACCATCGTCGCATGAGTCCTCATTGACATACAATAATGCGGATGCGGCAGGGGGAAGATCAGGATTCTTTGAGGATTGTGTGGCCAAAGAGCAAAAGCAGGAAACGGATTGTTCTGTATCAGAGGAATTACATGTTTTACAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

204

Amino Acids

22.61

Weight (kDa)

9.43

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	70 - 129	2.2e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10690
malus_domestica	MD04G1165400.v1.1 MD12G1179500.v1.1
prunus_persica	Prupe.6G284400_v2.0.a1 Prupe.6G284400_v2.0.a1
pyrus_communis	pycom04g14750 pycom12g16930
rosa_chinensis	RchiOBHm_Chr3g0461691 RchiOBHm_Chr6g0312551
rosa_laevigata	RLG00000010317 RLG00000024905
rosa_multiflora	Rmu_co8045116.1_g000001 Rmu_co8349119.1_g000001 Rmu_sc0003094.1_g000012 Rmu_sc0008363.1_g000007 Rmu_sc0038320.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048580 Rroxscaffold_2G00101990 Rroxscaffold_4G00310750 Rroxscaffold_6G00418040
rosa_rugosa	Rorug05G0531400 Rorug05G0531400 Rorug06G0396500
rosa_samantha	Rh3AG111200 Rh3BG114200 Rh3CG116400 Rh3DG116100 Rh4DG219100 Rh6AG513900 Rh6AG514000 Rh6BG525800 Rh6BG525900 Rh6CG530900 Rh6CG531000 Rh6DG516200 Rh6DG516300
rosa_wichuraiana	Rw3G009410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	37, 251, 503, 509
AcoI	YGGCCR	1 cut(s)	546
AcsI	RAATTY	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	310
AfaI	GTAC	2 cut(s)	291, 325
AfiI	CCNNNNNNNGG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	595
AluBI	AGCT	3 cut(s)	275, 347, 368
AluI	AGCT	3 cut(s)	275, 347, 368
Ama87I	CYCGRG	1 cut(s)	138
AoxI	GGCC	3 cut(s)	188, 393, 546
ApeKI	GCWGC	3 cut(s)	168, 347, 368
ApoI	RAATTY	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	2 cut(s)	188, 394
AsuC2I	CCSGG	1 cut(s)	397
AvaI	CYCGRG	1 cut(s)	138
BalI	TGGCCA	1 cut(s)	548
BanII	GRGCYC	2 cut(s)	145, 158
BarI	GAAGNNNNNNTAC	2 cut(s)	422, 454
BbsI	GAAGAC	1 cut(s)	140
BbvI	GCAGC	3 cut(s)	155, 334, 355
BccI	CCATC	2 cut(s)	116, 475
BcnI	CCSGG	1 cut(s)	397
BfaI	CTAG	2 cut(s)	276, 372
BfmI	CTRYAG	1 cut(s)	333
BisI	GCNGC	4 cut(s)	169, 348, 369, 510
BlsI	GCNGC	4 cut(s)	170, 349, 370, 511
Bme1390I	CCNGG	1 cut(s)	397
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	2 cut(s)	188, 394
BmiI	GGNNCC	2 cut(s)	144, 157
BmrFI	CCNGG	1 cut(s)	397
BmsI	GCATC	1 cut(s)	496
BpiI	GAAGAC	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	397
Bsa29I	ATCGAT	1 cut(s)	62
BsaHI	GRCGYC	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse118I	RCCGGY	1 cut(s)	281
BseCI	ATCGAT	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMII	CTCAG	1 cut(s)	213
BseXI	GCAGC	3 cut(s)	155, 334, 355
BshFI	GGCC	3 cut(s)	190, 395, 548
BshVI	ATCGAT	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	4 cut(s)	146, 191, 282, 397
BslI	CCNNNNNNNGG	1 cut(s)	152
BsnI	GGCC	3 cut(s)	190, 395, 548
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	2 cut(s)	145, 158
Bsp143I	GATC	1 cut(s)	521
BspACI	CCGC	4 cut(s)	37, 251, 503, 509
BspANI	GGCC	3 cut(s)	190, 395, 548
BspCNI	CTCAG	1 cut(s)	212
BspDI	ATCGAT	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	144, 157
BsrFI	RCCGGY	1 cut(s)	281
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	1 cut(s)	521
BssNI	GRCGYC	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	310
BstAPI	GCANNNNNTGC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	1 cut(s)	524
BstMBI	GATC	1 cut(s)	521
BstMWI	GCNNNNNNNGC	7 cut(s)	43, 54, 316, 344, 353, 374, 509
BstNSI	RCATGY	1 cut(s)	599
BstSCI	CCNGG	1 cut(s)	395
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	3 cut(s)	155, 334, 355
BstV2I	GAAGAC	1 cut(s)	140
Bsu15I	ATCGAT	1 cut(s)	62
BsuRI	GGCC	3 cut(s)	190, 395, 548
BsuTUI	ATCGAT	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	188, 394
ClaI	ATCGAT	1 cut(s)	62
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	2 cut(s)	290, 324
CviAII	CATG	3 cut(s)	172, 476, 596
CviQI	GTAC	2 cut(s)	290, 324
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	1 cut(s)	523
DpnII	GATC	1 cut(s)	521
EaeI	YGGCCR	1 cut(s)	546
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
EciI	GGCGGA	1 cut(s)	266
Eco24I	GRGCYC	2 cut(s)	145, 158
Eco88I	CYCGRG	1 cut(s)	138
EcoT38I	GRGCYC	2 cut(s)	145, 158
FaeI	CATG	3 cut(s)	175, 479, 599
FaiI	YATR	7 cut(s)	173, 342, 360, 384, 477, 493, 597
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FatI	CATG	3 cut(s)	171, 475, 595
Fnu4HI	GCNGC	4 cut(s)	169, 348, 369, 510
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	2 cut(s)	145, 158
Fsp4HI	GCNGC	4 cut(s)	169, 348, 369, 510
FspBI	CTAG	2 cut(s)	276, 372
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	4 cut(s)	169, 348, 369, 510
GsuI	CTGGAG	1 cut(s)	142
HaeIII	GGCC	3 cut(s)	190, 395, 548
HapII	CCGG	4 cut(s)	146, 191, 282, 397
HgaI	GACGC	1 cut(s)	299
HhaI	GCGC	1 cut(s)	48
Hin1I	GRCGYC	1 cut(s)	310
Hin1II	CATG	3 cut(s)	175, 479, 599
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	7 cut(s)	5, 59, 110, 136, 425, 479, 528
HpaII	CCGG	4 cut(s)	146, 191, 282, 397
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	4 cut(s)	10, 19, 202, 586
Hpy188III	TCNNGA	3 cut(s)	159, 260, 525
Hpy8I	GTNNAC	1 cut(s)	424
Hpy99I	CGWCG	1 cut(s)	475
HpyAV	CCTTC	2 cut(s)	145, 424
HpyCH4V	TGCA	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	7 cut(s)	43, 54, 316, 344, 353, 374, 509
HpyF3I	CTNAG	1 cut(s)	199
Hsp92I	GRCGYC	1 cut(s)	310
Hsp92II	CATG	3 cut(s)	175, 479, 599
HspAI	GCGC	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	521
LmnI	GCTCC	2 cut(s)	148, 161
LpnPI	CCDG	9 cut(s)	99, 159, 172, 204, 295, 410, 498, 510, 548
Lsp1109I	GCAGC	3 cut(s)	155, 334, 355
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	2 cut(s)	276, 372
MalI	GATC	1 cut(s)	523
MboI	GATC	1 cut(s)	521
MboII	GAAGA	7 cut(s)	52, 100, 142, 145, 310, 313, 531
MhlI	GDGCHC	2 cut(s)	145, 158
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	6 cut(s)	32, 255, 267, 378, 445, 590
MluNI	TGGCCA	1 cut(s)	548
MlyI	GAGTC	4 cut(s)	14, 130, 419, 488
Mox20I	TGGCCA	1 cut(s)	548
MroXI	GAANNNNTTC	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	548
Msp20I	TGGCCA	1 cut(s)	548
MspI	CCGG	4 cut(s)	146, 191, 282, 397
MspR9I	CCNGG	1 cut(s)	397
MwoI	GCNNNNNNNGC	7 cut(s)	43, 54, 316, 344, 353, 374, 509
NciI	CCSGG	1 cut(s)	397
NdeII	GATC	1 cut(s)	521
NlaIII	CATG	3 cut(s)	175, 479, 599
NlaIV	GGNNCC	2 cut(s)	144, 157
NspI	RCATGY	1 cut(s)	599
PciI	ACATGT	1 cut(s)	595
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	3 cut(s)	59, 110, 528
PkrI	GCNGC	4 cut(s)	170, 349, 370, 511
PleI	GAGTC	4 cut(s)	13, 130, 419, 487
PpsI	GAGTC	4 cut(s)	13, 130, 419, 487
PscI	ACATGT	1 cut(s)	595
PspN4I	GGNNCC	2 cut(s)	144, 157
PspPI	GGNCC	2 cut(s)	188, 394
RsaI	GTAC	2 cut(s)	291, 325
RsaNI	GTAC	2 cut(s)	290, 324
SatI	GCNGC	4 cut(s)	169, 348, 369, 510
Sau3AI	GATC	1 cut(s)	521
Sau96I	GGNCC	2 cut(s)	188, 394
SchI	GAGTC	4 cut(s)	14, 130, 419, 488
ScrFI	CCNGG	1 cut(s)	397
SduI	GDGCHC	2 cut(s)	145, 158
SetI	ASST	4 cut(s)	277, 295, 349, 370
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	1 cut(s)	333
Sse9I	AATT	6 cut(s)	32, 255, 267, 378, 445, 590
SsiI	CCGC	4 cut(s)	37, 251, 503, 509
SspMI	CTAG	2 cut(s)	276, 372
StyD4I	CCNGG	1 cut(s)	395
TaqI	TCGA	4 cut(s)	62, 259, 271, 428
TasI	AATT	6 cut(s)	32, 255, 267, 378, 445, 590
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	3 cut(s)	59, 110, 528
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	3 cut(s)	168, 347, 368
TspDTI	ATGAA	1 cut(s)	357
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	1 cut(s)	81
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	1 cut(s)	599
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	2 cut(s)	276, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.