Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8349119.1

Orthogroup ID

OG0003276

Physical Location & Seq

Genomic Coordinates Reverse (-)

371 .. 919

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8349119.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgagcaaacccatggagaaagaatttgctttgattctggaatctggagacaacaatctgcataatgaaccgattaacgtggcaagcaacaatctggtaactaatctgggtgaatatgaaaagactgtgctgcctcctaatgaatttcagggcgatattgcagaaactatgaaaccaaatggccataatggctttggtgataataatgcttgcttgcaggaacatgacgaacggataaatgtggcctacagtccaagatctggcatcaagccttcaacagatattgaaacgcagaaagagatcgacagcaaacttggcgacttgcatagttggtctcttgataaaacatatggcattgagctacataatcttcctaatcagttgcagatagcggatggcctatatggaagctttaattataaggaggaagaatgtttaggtgtcgattttaatctagattggtcgaggcaaaattacttttcgggtgaatttgaagagagtgcattgcctgattcatggttcccatactatcacggaggctctagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

182

Amino Acids

20.52

Weight (kDa)

4.44

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10690
malus_domestica	MD04G1165400.v1.1 MD12G1179500.v1.1
prunus_persica	Prupe.6G284400_v2.0.a1 Prupe.6G284400_v2.0.a1
pyrus_communis	pycom04g14750 pycom12g16930
rosa_chinensis	RchiOBHm_Chr3g0461691 RchiOBHm_Chr6g0312551
rosa_laevigata	RLG00000010317 RLG00000024905
rosa_multiflora	Rmu_co8045116.1_g000001 Rmu_co8349119.1_g000001 Rmu_sc0003094.1_g000012 Rmu_sc0008363.1_g000007 Rmu_sc0038320.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048580 Rroxscaffold_2G00101990 Rroxscaffold_4G00310750 Rroxscaffold_6G00418040
rosa_rugosa	Rorug05G0531400 Rorug05G0531400 Rorug06G0396500
rosa_samantha	Rh3AG111200 Rh3BG114200 Rh3CG116400 Rh3DG116100 Rh4DG219100 Rh6AG513900 Rh6AG514000 Rh6BG525800 Rh6BG525900 Rh6CG530900 Rh6CG531000 Rh6DG516200 Rh6DG516300
rosa_wichuraiana	Rw3G009410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	420
AccB7I	CCANNNNNTGG	1 cut(s)	260
AciI	CCGC	1 cut(s)	392
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	3 cut(s)	23, 143, 488
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	3 cut(s)	276, 287, 494
AluBI	AGCT	3 cut(s)	361, 411, 546
AluI	AGCT	3 cut(s)	361, 411, 546
Alw26I	GTCTC	2 cut(s)	42, 339
AoxI	GGCC	3 cut(s)	181, 243, 397
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	3 cut(s)	23, 143, 488
AsuHPI	GGTGA	3 cut(s)	122, 209, 497
BalI	TGGCCA	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	1 cut(s)	389
BcoDI	GTCTC	2 cut(s)	42, 339
BfaI	CTAG	2 cut(s)	455, 543
BfmI	CTRYAG	1 cut(s)	247
BglI	GCCNNNNNGGC	1 cut(s)	189
BglII	AGATCT	1 cut(s)	257
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	521
BmsI	GCATC	1 cut(s)	273
BpmI	CTGGAG	1 cut(s)	66
BsaBI	GATNNNNATC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	503
Bse8I	GATNNNNATC	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	400
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	503
BseXI	GCAGC	1 cut(s)	117
BshFI	GGCC	3 cut(s)	183, 245, 399
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	2 cut(s)	42, 339
BsnI	GGCC	3 cut(s)	183, 245, 399
Bso31I	GGTCTC	1 cut(s)	339
Bsp143I	GATC	2 cut(s)	257, 300
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	1 cut(s)	392
BspANI	GGCC	3 cut(s)	183, 245, 399
BspLI	GGNNCC	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	503
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	2 cut(s)	257, 300
BssT1I	CCWWGG	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	127, 251
Bst6I	CTCTTC	1 cut(s)	489
BstC8I	GCNNGC	3 cut(s)	85, 211, 215
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	400
BstKTI	GATC	2 cut(s)	260, 303
BstMAI	GTCTC	2 cut(s)	42, 339
BstMBI	GATC	2 cut(s)	257, 300
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 315
BstSFI	CTRYAG	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
BsuRI	GGCC	3 cut(s)	183, 245, 399
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	400
Cac8I	GCNNGC	3 cut(s)	85, 211, 215
CviAII	CATG	3 cut(s)	13, 224, 516
CviJI	RGCY	9 cut(s)	183, 192, 245, 271, 361, 399, 411, 540, 546
CviKI_1	RGCY	9 cut(s)	183, 192, 245, 271, 361, 399, 411, 540, 546
DpnI	GATC	2 cut(s)	259, 302
DpnII	GATC	2 cut(s)	257, 300
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
Eco130I	CCWWGG	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	3 cut(s)	16, 227, 519
FatI	CATG	3 cut(s)	12, 223, 515
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	1 cut(s)	407
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	2 cut(s)	455, 543
GluI	GCNGC	1 cut(s)	131
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	3 cut(s)	183, 245, 399
Hin1II	CATG	3 cut(s)	16, 227, 519
HindIII	AAGCTT	1 cut(s)	409
HinfI	GANTC	3 cut(s)	34, 41, 512
HphI	GGTGA	3 cut(s)	122, 209, 497
Hpy188III	TCNNGA	4 cut(s)	38, 45, 338, 455
HpyAV	CCTTC	1 cut(s)	282
HpyCH4III	ACNGT	2 cut(s)	127, 251
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	6 cut(s)	61, 161, 217, 325, 385, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 315
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	3 cut(s)	16, 227, 519
Kzo9I	GATC	2 cut(s)	257, 300
LpnPI	CCDG	8 cut(s)	23, 30, 80, 92, 134, 203, 246, 522
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	1 cut(s)	273
MaeI	CTAG	2 cut(s)	455, 543
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	2 cut(s)	259, 302
MboI	GATC	2 cut(s)	257, 300
MboII	GAAGA	3 cut(s)	362, 440, 506
MflI	RGATCY	1 cut(s)	257
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	5 cut(s)	23, 143, 415, 472, 488
MluNI	TGGCCA	1 cut(s)	183
MnlI	CCTC	4 cut(s)	144, 418, 459, 530
Mox20I	TGGCCA	1 cut(s)	183
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	3 cut(s)	75, 414, 450
Msp20I	TGGCCA	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	189, 315
NcoI	CCATGG	1 cut(s)	12
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	2 cut(s)	257, 300
NlaIII	CATG	3 cut(s)	16, 227, 519
NlaIV	GGNNCC	1 cut(s)	521
PfeI	GAWTC	3 cut(s)	34, 41, 512
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	132
PsiI	TTATAA	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	257
SaqAI	TTAA	3 cut(s)	75, 414, 450
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	2 cut(s)	257, 300
SetI	ASST	5 cut(s)	81, 363, 413, 442, 548
SfaNI	GCATC	1 cut(s)	273
SfcI	CTRYAG	1 cut(s)	247
Sse9I	AATT	5 cut(s)	23, 143, 415, 472, 488
SsiI	CCGC	1 cut(s)	392
SspMI	CTAG	2 cut(s)	455, 543
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	127, 251
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	3 cut(s)	303, 444, 464
TasI	AATT	5 cut(s)	23, 143, 415, 472, 488
TfiI	GAWTC	3 cut(s)	34, 41, 512
Tru1I	TTAA	3 cut(s)	75, 414, 450
Tru9I	TTAA	3 cut(s)	75, 414, 450
TseI	GCWGC	1 cut(s)	130
TspDTI	ATGAA	5 cut(s)	81, 132, 156, 185, 504
TspGWI	ACGGA	2 cut(s)	247, 549
Van91I	CCANNNNNTGG	1 cut(s)	260
XapI	RAATTY	3 cut(s)	23, 143, 488
XbaI	TCTAGA	1 cut(s)	454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	191
XspI	CTAG	2 cut(s)	455, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.