pycom04g14750

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
17559714 .. 17561198
1485 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g14750.2

Sequence Viewer

Length: 1425 bp
ATGGACACACTGGCCAAGTGGAAGAACTACAATGAGAGGCTTGATTTTGGAAAAGATGTAGGGAAGAAGACTCGGAGATCTCCGGCGAAGGGCTCCAGAAAAGGGTGCATGAGAGGGAAAGGAGGGCCGGAGAATTCAGATTGTGTATTTAGGGGTGTTAGGCAGAGGACTTGGGGAAAATGGGTGGCGGAAATTCGAGAACCAATTCGAGCTAGAGCCGGTTCTGTACCTAAGAAGAAGAATATGCGTCTTTGGCTTGGTACTTTCCCTACAGCCTATGAAGCTGCTCTTGCTTATGACAAAGCTGCTAGAGCAATGTATGGTGCTTTGGCCCGGCTCAACTTCCCCGACAATGCTGTGGACTCGAAGGACTACTACTCTAATTCTGTGTCATCTAAAACACCATCGTCGCATGAGTCCTCATCGACGTACAATAATGCGGATGAGGCAGAGGGAAGATCAGCTTTCTTTGAGGATTGTGTAGCGAAAGAGCAAAAGCAGGAAACGGATTGTTCTGTGTCAGAGGAATTACATGTTTTACGTGCTACCTCAAGAGAACCAAAAGCTGTGAAATGCGAATACGAAACTGAACGTGAGCTTGTTAAGAACGATGATGTTTTTCAGACCGGGAGCTATGGAAGCTTCGATCATAGGGGAGATTACTTGCCTAATGAGCCCCCAGTTGTGAATTTTGATTCGGTATTTGATCAGAAACCTTGTAACGATTGGGATCCTTTGGAGATATTTTTGAGGTCCAATTATGATTACTTAACTGAGGTTGTAGATGGGGAATGCAATCGGAGAAACAGTTGCAAGCCTTCAAATGATGTCAAAGTTGAGACACCGGCTATGAGGGAAGCCGCGGAGAAACCATTTCCGGTGATTCTGGAATCCGGAAGTCACAATGGGTTAGATGAGAAGTACAACTACATGCATGGTGAGCAAATAAACGCGGCCGAAAATCTTGTAACCAATTTTGAGCCTTCTGAGGATGTTGAAATGAAGTTATCGATGACGGATCAAGAATTGCAAGGAGGATTTGCAGAAACGACGAGATTAAATGGCCATAATCACGATGGCTTCATACATAGTTATGCTTGTTTAGATGATTTAGATGTGGCATACAGTCCGATATATGGCATTAATCCTTGGAATGATATCGGAATGCAGAAAGAGCTCGACGACAGACTTGACTACGTGCATAACTGGTCTGCAGAGGAAACCTATGGCATTGATGCTGCTGAGGACCAACAATGGGGGAGGACGCATAATCTCCCCACTCAGTTGCAGACACAACCACATCTCGACATAACTGGAAGCTCGAATCACGCAGAGTACGCACGTTTAGGCGTGGATTTCGATTCAGTCTTATTTCGACAGAGTTACGATTCTGGTGAAATGGAAGATCAGGGGCCGCCTAAATGA

Protein Analysis

475

Amino Acids

53.68

Weight (kDa)

4.96

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 863, 953
AccIII TCCGGA 1 cut(s) 893
AciI CCGC 6 cut(s) 188, 440, 861, 863, 953, 1415
AclWI GGATC 3 cut(s) 725, 738, 1026
AcoI YGGCCR 3 cut(s) 12, 954, 1063
AcsI RAATTY 3 cut(s) 133, 192, 688
AfaI GTAC 5 cut(s) 228, 262, 431, 923, 1337
AfiI CCNNNNNNNGG 4 cut(s) 89, 102, 1136, 1255
AflIII ACRYGT 1 cut(s) 532
AgsI TTSAA 2 cut(s) 822, 998
Alw21I GWGCWC 1 cut(s) 1179
Alw26I GTCTC 1 cut(s) 833
AlwI GGATC 3 cut(s) 725, 738, 1026
Aor13HI TCCGGA 1 cut(s) 893
AoxI GGCC 6 cut(s) 12, 125, 330, 954, 1063, 1412
ApeKI GCWGC 3 cut(s) 284, 305, 1238
ApoI RAATTY 3 cut(s) 133, 192, 688
AseI ATTAAT 1 cut(s) 1143
Asp700I GAANNNNTTC 1 cut(s) 204
AspS9I GGNCC 5 cut(s) 125, 331, 753, 1246, 1412
AsuC2I CCSGG 2 cut(s) 334, 628
AsuHPI GGTGA 3 cut(s) 892, 950, 1406
AvaII GGWCC 2 cut(s) 753, 1246
BalI TGGCCA 2 cut(s) 14, 1065
BamHI GGATCC 1 cut(s) 730
BanII GRGCYC 3 cut(s) 95, 678, 1179
BarI GAAGNNNNNNTAC 4 cut(s) 359, 391, 911, 943
BbsI GAAGAC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 1179
BbvCI CCTCAGC 1 cut(s) 1242
BbvI GCAGC 3 cut(s) 271, 292, 1225
BccI CCATC 3 cut(s) 412, 779, 1070
BclI TGATCA 1 cut(s) 706
BcnI CCSGG 2 cut(s) 334, 628
BcoDI GTCTC 1 cut(s) 833
BfaI CTAG 2 cut(s) 213, 309
BfmI CTRYAG 2 cut(s) 270, 1212
BglII AGATCT 1 cut(s) 77
BisI GCNGC 6 cut(s) 285, 306, 861, 954, 1239, 1415
BlsI GCNGC 6 cut(s) 286, 307, 862, 955, 1240, 1416
Bme1390I CCNGG 2 cut(s) 334, 628
Bme18I GGWCC 2 cut(s) 753, 1246
BmgT120I GGNCC 5 cut(s) 125, 331, 753, 1246, 1412
BmiI GGNNCC 3 cut(s) 94, 732, 1413
BmrFI CCNGG 2 cut(s) 334, 628
BmrI ACTGGG 1 cut(s) 674
BmsI GCATC 1 cut(s) 1225
BmuI ACTGGG 1 cut(s) 674
BpiI GAAGAC 1 cut(s) 74
BpmI CTGGAG 1 cut(s) 79
Bpu10I CCTNAGC 1 cut(s) 1242
BpuEI CTTGAG 1 cut(s) 535
BpuMI CCSGG 2 cut(s) 334, 628
Bsa29I ATCGAT 1 cut(s) 1010
BsaAI YACGTR 2 cut(s) 542, 1198
BsaBI GATNNNNATC 1 cut(s) 729
BsaJI CCNNGG 2 cut(s) 861, 1148
BsaWI WCCGGW 2 cut(s) 877, 893
BsaXI ACNNNNNCTCC 2 cut(s) 793, 823
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 102, 1136, 1255
Bse118I RCCGGY 2 cut(s) 218, 844
Bse1I ACTGG 4 cut(s) 15, 680, 1211, 1318
Bse3DI GCAATG 1 cut(s) 321
Bse8I GATNNNNATC 1 cut(s) 729
BseAI TCCGGA 1 cut(s) 893
BseCI ATCGAT 1 cut(s) 1010
BseDI CCNNGG 2 cut(s) 861, 1148
BseGI GGATG 2 cut(s) 448, 997
BseJI GATNNNNATC 1 cut(s) 729
BseLI CCNNNNNNNGG 4 cut(s) 89, 102, 1136, 1255
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 4 cut(s) 765, 978, 1233, 1295
BseNI ACTGG 4 cut(s) 15, 680, 1211, 1318
BseX3I CGGCCG 1 cut(s) 954
BseXI GCAGC 3 cut(s) 271, 292, 1225
Bsh1236I CGCG 2 cut(s) 863, 953
Bsh1285I CGRYCG 1 cut(s) 957
BshFI GGCC 6 cut(s) 14, 127, 332, 956, 1065, 1414
BshVI ATCGAT 1 cut(s) 1010
BsiEI CGRYCG 1 cut(s) 957
BsiHKAI GWGCWC 1 cut(s) 1179
BsiSI CCGG 8 cut(s) 83, 128, 219, 334, 627, 845, 878, 894
BslI CCNNNNNNNGG 4 cut(s) 89, 102, 1136, 1255
BsmAI GTCTC 1 cut(s) 833
BsmI GAATGC 2 cut(s) 797, 1170
BsnI GGCC 6 cut(s) 14, 127, 332, 956, 1065, 1414
Bsp1286I GDGCHC 3 cut(s) 95, 678, 1179
Bsp13I TCCGGA 1 cut(s) 893
Bsp143I GATC 7 cut(s) 77, 458, 646, 706, 730, 1018, 1405
BspACI CCGC 6 cut(s) 188, 440, 861, 863, 953, 1415
BspANI GGCC 6 cut(s) 14, 127, 332, 956, 1065, 1414
BspCNI CTCAG 4 cut(s) 766, 979, 1234, 1294
BspDI ATCGAT 1 cut(s) 1010
BspEI TCCGGA 1 cut(s) 893
BspFNI CGCG 2 cut(s) 863, 953
BspLI GGNNCC 3 cut(s) 94, 732, 1413
BspMAI CTGCAG 1 cut(s) 1216
BspPI GGATC 3 cut(s) 725, 738, 1026
BsrDI GCAATG 1 cut(s) 321
BsrFI RCCGGY 2 cut(s) 218, 844
BsrI ACTGG 4 cut(s) 15, 680, 1211, 1318
BssAI RCCGGY 2 cut(s) 218, 844
BssECI CCNNGG 2 cut(s) 861, 1148
BssMI GATC 7 cut(s) 77, 458, 646, 706, 730, 1018, 1405
BssT1I CCWWGG 1 cut(s) 1148
Bst4CI ACNGT 2 cut(s) 809, 1127
BstBAI YACGTR 2 cut(s) 542, 1198
BstC8I GCNNGC 1 cut(s) 815
BstDEI CTNAG 5 cut(s) 231, 774, 987, 1242, 1281
BstDSI CCRYGG 1 cut(s) 861
BstF5I GGATG 2 cut(s) 448, 997
BstFNI CGCG 2 cut(s) 863, 953
BstKTI GATC 7 cut(s) 80, 461, 649, 709, 733, 1021, 1408
BstMAI GTCTC 1 cut(s) 833
BstMBI GATC 7 cut(s) 77, 458, 646, 706, 730, 1018, 1405
BstMCI CGRYCG 1 cut(s) 957
BstNSI RCATGY 2 cut(s) 536, 934
BstSCI CCNGG 2 cut(s) 332, 626
BstSFI CTRYAG 2 cut(s) 270, 1212
BstUI CGCG 2 cut(s) 863, 953
BstV1I GCAGC 3 cut(s) 271, 292, 1225
BstV2I GAAGAC 1 cut(s) 74
BstX2I RGATCY 2 cut(s) 77, 730
BstYI RGATCY 2 cut(s) 77, 730
BstZI CGGCCG 1 cut(s) 954
Bsu15I ATCGAT 1 cut(s) 1010
BsuRI GGCC 6 cut(s) 14, 127, 332, 956, 1065, 1414
BsuTUI ATCGAT 1 cut(s) 1010
BtgI CCRYGG 1 cut(s) 861
BtsCI GGATG 2 cut(s) 448, 997
BtsIMutI CAGTG 1 cut(s) 8
Cac8I GCNNGC 1 cut(s) 815
Cfr10I RCCGGY 2 cut(s) 218, 844
Cfr13I GGNCC 5 cut(s) 125, 331, 753, 1246, 1412
Cfr42I CCGCGG 1 cut(s) 864
ClaI ATCGAT 1 cut(s) 1010
CseI GACGC 2 cut(s) 236, 1273
Csp6I GTAC 5 cut(s) 227, 261, 430, 922, 1336
CviAII CATG 5 cut(s) 109, 413, 533, 931, 935
CviQI GTAC 5 cut(s) 227, 261, 430, 922, 1336
DdeI CTNAG 5 cut(s) 231, 774, 987, 1242, 1281
DpnI GATC 7 cut(s) 79, 460, 648, 708, 732, 1020, 1407
DpnII GATC 7 cut(s) 77, 458, 646, 706, 730, 1018, 1405
EaeI YGGCCR 3 cut(s) 12, 954, 1063
EagI CGGCCG 1 cut(s) 954
EciI GGCGGA 1 cut(s) 203
Ecl136II GAGCTC 1 cut(s) 1177
EclXI CGGCCG 1 cut(s) 954
Eco130I CCWWGG 1 cut(s) 1148
Eco24I GRGCYC 3 cut(s) 95, 678, 1179
Eco32I GATATC 1 cut(s) 1159
Eco47I GGWCC 2 cut(s) 753, 1246
Eco52I CGGCCG 1 cut(s) 954
Eco53kI GAGCTC 1 cut(s) 1177
EcoICRI GAGCTC 1 cut(s) 1177
EcoRI GAATTC 1 cut(s) 133
EcoRV GATATC 1 cut(s) 1159
EcoT14I CCWWGG 1 cut(s) 1148
EcoT22I ATGCAT 1 cut(s) 936
EcoT38I GRGCYC 3 cut(s) 95, 678, 1179
ErhI CCWWGG 1 cut(s) 1148
FaeI CATG 5 cut(s) 112, 416, 536, 934, 938
FalI AAGNNNNNCTT 4 cut(s) 273, 305, 448, 480
FatI CATG 5 cut(s) 108, 412, 532, 930, 934
FbaI TGATCA 1 cut(s) 706
Fnu4HI GCNGC 6 cut(s) 285, 306, 861, 954, 1239, 1415
FokI GGATG 2 cut(s) 455, 1004
FriOI GRGCYC 3 cut(s) 95, 678, 1179
Fsp4HI GCNGC 6 cut(s) 285, 306, 861, 954, 1239, 1415
FspBI CTAG 2 cut(s) 213, 309
GluI GCNGC 6 cut(s) 285, 306, 861, 954, 1239, 1415
GsuI CTGGAG 1 cut(s) 79
HaeIII GGCC 6 cut(s) 14, 127, 332, 956, 1065, 1414
HapII CCGG 8 cut(s) 83, 128, 219, 334, 627, 845, 878, 894
HgaI GACGC 2 cut(s) 236, 1273
Hin1II CATG 5 cut(s) 112, 416, 536, 934, 938
HindIII AAGCTT 1 cut(s) 640
HinfI GANTC 9 cut(s) 70, 362, 416, 695, 883, 890, 1324, 1361, 1388
HpaII CCGG 8 cut(s) 83, 128, 219, 334, 627, 845, 878, 894
HphI GGTGA 3 cut(s) 892, 950, 1406
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 9 cut(s) 75, 139, 523, 624, 711, 801, 988, 1131, 1163
Hpy188III TCNNGA 8 cut(s) 96, 197, 552, 887, 894, 1022, 1073, 1304
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 4 cut(s) 412, 430, 1054, 1184
HpyAV CCTTC 4 cut(s) 82, 361, 828, 993
HpyCH4III ACNGT 2 cut(s) 809, 1127
HpyCH4IV ACGT 5 cut(s) 428, 541, 592, 1197, 1342
HpyF3I CTNAG 5 cut(s) 231, 774, 987, 1242, 1281
HpySE526I ACGT 5 cut(s) 428, 541, 592, 1197, 1342
Hsp92II CATG 5 cut(s) 112, 416, 536, 934, 938
Kpn2I TCCGGA 1 cut(s) 893
Ksp22I TGATCA 1 cut(s) 706
KspI CCGCGG 1 cut(s) 864
Kzo9I GATC 7 cut(s) 77, 458, 646, 706, 730, 1018, 1405
LmnI GCTCC 2 cut(s) 98, 630
Lsp1109I GCAGC 3 cut(s) 271, 292, 1225
LweI GCATC 1 cut(s) 1225
MaeI CTAG 2 cut(s) 213, 309
MaeII ACGT 5 cut(s) 428, 541, 592, 1197, 1342
MaeIII GTNAC 4 cut(s) 719, 899, 967, 1382
MalI GATC 7 cut(s) 79, 460, 648, 708, 732, 1020, 1407
MboI GATC 7 cut(s) 77, 458, 646, 706, 730, 1018, 1405
MboII GAAGA 7 cut(s) 34, 76, 79, 247, 250, 468, 1415
MflI RGATCY 2 cut(s) 77, 730
MhlI GDGCHC 3 cut(s) 95, 678, 1179
MlsI TGGCCA 2 cut(s) 14, 1065
MluCI AATT 9 cut(s) 133, 192, 204, 382, 527, 688, 757, 973, 1025
MluNI TGGCCA 2 cut(s) 14, 1065
MlyI GAGTC 3 cut(s) 64, 356, 425
Mox20I TGGCCA 2 cut(s) 14, 1065
Mph1103I ATGCAT 1 cut(s) 936
MroI TCCGGA 1 cut(s) 893
MroXI GAANNNNTTC 1 cut(s) 204
MscI TGGCCA 2 cut(s) 14, 1065
MseI TTAA 4 cut(s) 603, 770, 1058, 1143
MslI CAYNNNNRTG 1 cut(s) 1092
Msp20I TGGCCA 2 cut(s) 14, 1065
MspA1I CMGCKG 1 cut(s) 863
MspI CCGG 8 cut(s) 83, 128, 219, 334, 627, 845, 878, 894
MspR9I CCNGG 2 cut(s) 334, 628
Mva1269I GAATGC 2 cut(s) 797, 1170
MvnI CGCG 2 cut(s) 863, 953
NciI CCSGG 2 cut(s) 334, 628
NdeII GATC 7 cut(s) 77, 458, 646, 706, 730, 1018, 1405
NlaIII CATG 5 cut(s) 112, 416, 536, 934, 938
NlaIV GGNNCC 3 cut(s) 94, 732, 1413
NmuCI GTSAC 1 cut(s) 899
NsiI ATGCAT 1 cut(s) 936
NspI RCATGY 2 cut(s) 536, 934
PciI ACATGT 1 cut(s) 532
PctI GAATGC 2 cut(s) 797, 1170
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 6 cut(s) 695, 883, 890, 1324, 1361, 1388
PkrI GCNGC 6 cut(s) 286, 307, 862, 955, 1240, 1416
PleI GAGTC 3 cut(s) 64, 356, 424
PpsI GAGTC 3 cut(s) 64, 356, 424
Ppu21I YACGTR 2 cut(s) 542, 1198
PscI ACATGT 1 cut(s) 532
PshBI ATTAAT 1 cut(s) 1143
Psp124BI GAGCTC 1 cut(s) 1179
PspN4I GGNNCC 3 cut(s) 94, 732, 1413
PspPI GGNCC 5 cut(s) 125, 331, 753, 1246, 1412
PstI CTGCAG 1 cut(s) 1216
PsuI RGATCY 2 cut(s) 77, 730
RsaI GTAC 5 cut(s) 228, 262, 431, 923, 1337
RsaNI GTAC 5 cut(s) 227, 261, 430, 922, 1336
RseI CAYNNNNRTG 1 cut(s) 1092
SacI GAGCTC 1 cut(s) 1179
SacII CCGCGG 1 cut(s) 864
SaqAI TTAA 4 cut(s) 603, 770, 1058, 1143
SatI GCNGC 6 cut(s) 285, 306, 861, 954, 1239, 1415
Sau3AI GATC 7 cut(s) 77, 458, 646, 706, 730, 1018, 1405
Sau96I GGNCC 5 cut(s) 125, 331, 753, 1246, 1412
SchI GAGTC 3 cut(s) 64, 356, 425
ScrFI CCNGG 2 cut(s) 334, 628
SduI GDGCHC 3 cut(s) 95, 678, 1179
SfaNI GCATC 1 cut(s) 1225
SfcI CTRYAG 2 cut(s) 270, 1212
Sfr303I CCGCGG 1 cut(s) 864
SgrBI CCGCGG 1 cut(s) 864
SinI GGWCC 2 cut(s) 753, 1246
SmiMI CAYNNNNRTG 1 cut(s) 1092
SmlI CTYRAG 1 cut(s) 550
SmoI CTYRAG 1 cut(s) 550
Sse9I AATT 9 cut(s) 133, 192, 204, 382, 527, 688, 757, 973, 1025
SsiI CCGC 6 cut(s) 188, 440, 861, 863, 953, 1415
SspMI CTAG 2 cut(s) 213, 309
SstI GAGCTC 1 cut(s) 1179
StyD4I CCNGG 2 cut(s) 332, 626
StyI CCWWGG 1 cut(s) 1148
TaaI ACNGT 2 cut(s) 809, 1127
TaiI ACGT 5 cut(s) 431, 544, 595, 1200, 1345
TasI AATT 9 cut(s) 133, 192, 204, 382, 527, 688, 757, 973, 1025
TatI WGTACW 1 cut(s) 921
TauI GCSGC 3 cut(s) 863, 956, 1417
TfiI GAWTC 6 cut(s) 695, 883, 890, 1324, 1361, 1388
Tru1I TTAA 4 cut(s) 603, 770, 1058, 1143
Tru9I TTAA 4 cut(s) 603, 770, 1058, 1143
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 899
TseI GCWGC 3 cut(s) 284, 305, 1238
Tsp45I GTSAC 1 cut(s) 899
TspDTI ATGAA 3 cut(s) 294, 1016, 1072
TspGWI ACGGA 2 cut(s) 521, 1031
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 2 cut(s) 753, 1246
VspI ATTAAT 1 cut(s) 1143
XapI RAATTY 3 cut(s) 133, 192, 688
XceI RCATGY 2 cut(s) 536, 934
XcmI CCANNNNNNNNNTGG 1 cut(s) 1073
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 2 cut(s) 213, 309
Zsp2I ATGCAT 1 cut(s) 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.