DNA-binding domain in plant proteins such as APETALA2 and EREBPs
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g10690 |
| malus_domestica | MD04G1165400.v1.1 MD12G1179500.v1.1 |
| prunus_persica | Prupe.6G284400_v2.0.a1 Prupe.6G284400_v2.0.a1 |
| pyrus_communis | pycom04g14750 pycom12g16930 |
| rosa_chinensis | RchiOBHm_Chr3g0461691 RchiOBHm_Chr6g0312551 |
| rosa_laevigata | RLG00000010317 RLG00000024905 |
| rosa_multiflora | Rmu_co8045116.1_g000001 Rmu_co8349119.1_g000001 Rmu_sc0003094.1_g000012 Rmu_sc0008363.1_g000007 Rmu_sc0038320.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00048580 Rroxscaffold_2G00101990 Rroxscaffold_4G00310750 Rroxscaffold_6G00418040 |
| rosa_rugosa | Rorug05G0531400 Rorug05G0531400 Rorug06G0396500 |
| rosa_samantha | Rh3AG111200 Rh3BG114200 Rh3CG116400 Rh3DG116100 Rh4DG219100 Rh6AG513900 Rh6AG514000 Rh6BG525800 Rh6BG525900 Rh6CG530900 Rh6CG531000 Rh6DG516200 Rh6DG516300 |
| rosa_wichuraiana | Rw3G009410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1665 |
| AatII | GACGTC | 1 cut(s) | 290 |
| AccB1I | GGYRCC | 1 cut(s) | 546 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1505 |
| AccI | GTMKAC | 1 cut(s) | 1042 |
| AccII | CGCG | 1 cut(s) | 133 |
| AciI | CCGC | 2 cut(s) | 131, 1637 |
| AcoI | YGGCCR | 1 cut(s) | 1426 |
| AcsI | RAATTY | 8 cut(s) | 91, 193, 252, 464, 1082, 1268, 1388, 1733 |
| AcuI | CTGAAG | 3 cut(s) | 789, 984, 1055 |
| AcyI | GRCGYC | 2 cut(s) | 5, 287 |
| AfaI | GTAC | 6 cut(s) | 83, 261, 319, 1095, 1105, 1148 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 149, 1505 |
| AflIII | ACRYGT | 1 cut(s) | 1236 |
| AjiI | CACGTC | 1 cut(s) | 1239 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 794, 826 |
| Alw26I | GTCTC | 3 cut(s) | 428, 1287, 1584 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 863 |
| Ama87I | CYCGRG | 1 cut(s) | 783 |
| AoxI | GGCC | 7 cut(s) | 44, 185, 369, 779, 1426, 1488, 1642 |
| ApeKI | GCWGC | 4 cut(s) | 341, 362, 1029, 1375 |
| ApoI | RAATTY | 8 cut(s) | 91, 193, 252, 464, 1082, 1268, 1388, 1733 |
| AspS9I | GGNCC | 4 cut(s) | 45, 185, 380, 823 |
| AsuC2I | CCSGG | 1 cut(s) | 551 |
| AsuHPI | GGTGA | 5 cut(s) | 130, 494, 1367, 1454, 1742 |
| AvaI | CYCGRG | 1 cut(s) | 783 |
| AvaII | GGWCC | 2 cut(s) | 380, 823 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 318, 351 |
| BalI | TGGCCA | 1 cut(s) | 1428 |
| BanI | GGYRCC | 1 cut(s) | 546 |
| BbvI | GCAGC | 4 cut(s) | 328, 349, 1041, 1362 |
| BccI | CCATC | 3 cut(s) | 104, 467, 1634 |
| BceAI | ACGGC | 1 cut(s) | 998 |
| BcnI | CCSGG | 1 cut(s) | 551 |
| BcoDI | GTCTC | 3 cut(s) | 428, 1287, 1584 |
| BfaI | CTAG | 4 cut(s) | 156, 1098, 1700, 1788 |
| BfmI | CTRYAG | 2 cut(s) | 333, 1492 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1434 |
| BglII | AGATCT | 1 cut(s) | 1502 |
| BisI | GCNGC | 5 cut(s) | 131, 342, 363, 1030, 1376 |
| BlpI | GCTNAGC | 1 cut(s) | 1170 |
| BlsI | GCNGC | 5 cut(s) | 132, 343, 364, 1031, 1377 |
| Bme1390I | CCNGG | 1 cut(s) | 551 |
| Bme18I | GGWCC | 2 cut(s) | 380, 823 |
| BmeT110I | CYCGRG | 1 cut(s) | 783 |
| BmgBI | CACGTC | 1 cut(s) | 1239 |
| BmgT120I | GGNCC | 4 cut(s) | 45, 185, 380, 823 |
| BmiI | GGNNCC | 5 cut(s) | 548, 765, 789, 906, 1766 |
| BmrFI | CCNGG | 1 cut(s) | 551 |
| BmsI | GCATC | 5 cut(s) | 117, 129, 505, 1156, 1518 |
| BpmI | CTGGAG | 1 cut(s) | 1311 |
| Bpu10I | CCTNAGC | 1 cut(s) | 936 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1170 |
| BpuMI | CCSGG | 1 cut(s) | 551 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1065, 1695 |
| BsaHI | GRCGYC | 2 cut(s) | 5, 287 |
| BsaI | GGTCTC | 2 cut(s) | 428, 1584 |
| BsaJI | CCNNGG | 4 cut(s) | 147, 533, 782, 1257 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 149, 1505 |
| Bse1I | ACTGG | 1 cut(s) | 630 |
| Bse3DI | GCAATG | 2 cut(s) | 987, 1748 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1065, 1695 |
| BseDI | CCNNGG | 4 cut(s) | 147, 533, 782, 1257 |
| BseGI | GGATG | 7 cut(s) | 61, 132, 144, 436, 478, 712, 1645 |
| BseJI | GATNNNNATC | 2 cut(s) | 1065, 1695 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 149, 1505 |
| BseMI | GCAATG | 2 cut(s) | 987, 1748 |
| BseMII | CTCAG | 4 cut(s) | 180, 693, 950, 1161 |
| BseNI | ACTGG | 1 cut(s) | 630 |
| BseRI | GAGGAG | 1 cut(s) | 1013 |
| BseXI | GCAGC | 4 cut(s) | 328, 349, 1041, 1362 |
| BsgI | GTGCAG | 1 cut(s) | 327 |
| Bsh1236I | CGCG | 1 cut(s) | 133 |
| BshFI | GGCC | 7 cut(s) | 46, 187, 371, 781, 1428, 1490, 1644 |
| BshNI | GGYRCC | 1 cut(s) | 546 |
| BsiHKCI | CYCGRG | 1 cut(s) | 783 |
| BsiSI | CCGG | 1 cut(s) | 550 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 149, 1505 |
| BsmAI | GTCTC | 3 cut(s) | 428, 1287, 1584 |
| BsmI | GAATGC | 1 cut(s) | 664 |
| BsnI | GGCC | 7 cut(s) | 46, 187, 371, 781, 1428, 1490, 1644 |
| Bso31I | GGTCTC | 2 cut(s) | 428, 1584 |
| BsoBI | CYCGRG | 1 cut(s) | 783 |
| Bsp143I | GATC | 2 cut(s) | 1502, 1545 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1170 |
| Bsp19I | CCATGG | 1 cut(s) | 1257 |
| BspACI | CCGC | 2 cut(s) | 131, 1637 |
| BspANI | GGCC | 7 cut(s) | 46, 187, 371, 781, 1428, 1490, 1644 |
| BspCNI | CTCAG | 4 cut(s) | 181, 694, 949, 1162 |
| BspFNI | CGCG | 1 cut(s) | 133 |
| BspLI | GGNNCC | 5 cut(s) | 548, 765, 789, 906, 1766 |
| BspQI | GCTCTTC | 1 cut(s) | 480 |
| BspT107I | GGYRCC | 1 cut(s) | 546 |
| BspTNI | GGTCTC | 2 cut(s) | 428, 1584 |
| BsrDI | GCAATG | 2 cut(s) | 987, 1748 |
| BsrI | ACTGG | 1 cut(s) | 630 |
| BssECI | CCNNGG | 4 cut(s) | 147, 533, 782, 1257 |
| BssMI | GATC | 2 cut(s) | 1502, 1545 |
| BssNI | GRCGYC | 2 cut(s) | 5, 287 |
| BssT1I | CCWWGG | 2 cut(s) | 533, 1257 |
| Bst6I | CTCTTC | 2 cut(s) | 480, 1734 |
| BstACI | GRCGYC | 2 cut(s) | 5, 287 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 863 |
| BstC8I | GCNNGC | 3 cut(s) | 1330, 1456, 1460 |
| BstDEI | CTNAG | 7 cut(s) | 189, 675, 702, 909, 936, 1162, 1170 |
| BstDSI | CCRYGG | 2 cut(s) | 147, 1257 |
| BstF5I | GGATG | 7 cut(s) | 61, 132, 144, 436, 478, 712, 1645 |
| BstFNI | CGCG | 1 cut(s) | 133 |
| BstKTI | GATC | 2 cut(s) | 1505, 1548 |
| BstMAI | GTCTC | 3 cut(s) | 428, 1287, 1584 |
| BstMBI | GATC | 2 cut(s) | 1502, 1545 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 139, 338, 347, 368, 863, 1434, 1560 |
| BstNSI | RCATGY | 1 cut(s) | 350 |
| BstSCI | CCNGG | 1 cut(s) | 549 |
| BstSFI | CTRYAG | 2 cut(s) | 333, 1492 |
| BstUI | CGCG | 1 cut(s) | 133 |
| BstV1I | GCAGC | 4 cut(s) | 328, 349, 1041, 1362 |
| BstX2I | RGATCY | 1 cut(s) | 1502 |
| BstYI | RGATCY | 1 cut(s) | 1502 |
| BsuRI | GGCC | 7 cut(s) | 46, 187, 371, 781, 1428, 1490, 1644 |
| BtgI | CCRYGG | 2 cut(s) | 147, 1257 |
| BtrI | CACGTC | 1 cut(s) | 1239 |
| BtsCI | GGATG | 7 cut(s) | 61, 132, 144, 436, 478, 712, 1645 |
| BtsI | GCAGTG | 2 cut(s) | 861, 905 |
| BtsIMutI | CAGTG | 2 cut(s) | 861, 905 |
| Cac8I | GCNNGC | 3 cut(s) | 1330, 1456, 1460 |
| CaiI | CAGNNNCTG | 1 cut(s) | 863 |
| Cfr13I | GGNCC | 4 cut(s) | 45, 185, 380, 823 |
| CseI | GACGC | 2 cut(s) | 13, 447 |
| Csp6I | GTAC | 6 cut(s) | 82, 260, 318, 1094, 1104, 1147 |
| CviAII | CATG | 7 cut(s) | 278, 347, 373, 1046, 1258, 1469, 1761 |
| CviQI | GTAC | 6 cut(s) | 82, 260, 318, 1094, 1104, 1147 |
| DdeI | CTNAG | 7 cut(s) | 189, 675, 702, 909, 936, 1162, 1170 |
| DpnI | GATC | 2 cut(s) | 1504, 1547 |
| DpnII | GATC | 2 cut(s) | 1502, 1545 |
| EaeI | YGGCCR | 1 cut(s) | 1426 |
| Eam1104I | CTCTTC | 2 cut(s) | 480, 1734 |
| EarI | CTCTTC | 2 cut(s) | 480, 1734 |
| Eco130I | CCWWGG | 2 cut(s) | 533, 1257 |
| Eco31I | GGTCTC | 2 cut(s) | 428, 1584 |
| Eco47I | GGWCC | 2 cut(s) | 380, 823 |
| Eco57I | CTGAAG | 3 cut(s) | 789, 984, 1055 |
| Eco88I | CYCGRG | 1 cut(s) | 783 |
| EcoO109I | RGGNCCY | 1 cut(s) | 185 |
| EcoT14I | CCWWGG | 2 cut(s) | 533, 1257 |
| ErhI | CCWWGG | 2 cut(s) | 533, 1257 |
| FaeI | CATG | 7 cut(s) | 281, 350, 376, 1049, 1261, 1472, 1764 |
| FatI | CATG | 7 cut(s) | 277, 346, 372, 1045, 1257, 1468, 1760 |
| FauNDI | CATATG | 1 cut(s) | 1594 |
| FblI | GTMKAC | 1 cut(s) | 1042 |
| Fnu4HI | GCNGC | 5 cut(s) | 131, 342, 363, 1030, 1376 |
| FokI | GGATG | 7 cut(s) | 68, 139, 151, 443, 485, 719, 1652 |
| Fsp4HI | GCNGC | 5 cut(s) | 131, 342, 363, 1030, 1376 |
| FspBI | CTAG | 4 cut(s) | 156, 1098, 1700, 1788 |
| GluI | GCNGC | 5 cut(s) | 131, 342, 363, 1030, 1376 |
| GsuI | CTGGAG | 1 cut(s) | 1311 |
| HaeIII | GGCC | 7 cut(s) | 46, 187, 371, 781, 1428, 1490, 1644 |
| HapII | CCGG | 1 cut(s) | 550 |
| HgaI | GACGC | 2 cut(s) | 13, 447 |
| Hin1I | GRCGYC | 2 cut(s) | 5, 287 |
| Hin1II | CATG | 7 cut(s) | 281, 350, 376, 1049, 1261, 1472, 1764 |
| HincII | GTYRAC | 1 cut(s) | 1234 |
| HindII | GTYRAC | 1 cut(s) | 1234 |
| HindIII | AAGCTT | 1 cut(s) | 1654 |
| HinfI | GANTC | 8 cut(s) | 121, 407, 443, 647, 1088, 1279, 1286, 1757 |
| HpaII | CCGG | 1 cut(s) | 550 |
| HphI | GGTGA | 5 cut(s) | 130, 494, 1367, 1454, 1742 |
| Hpy166II | GTNNAC | 2 cut(s) | 1043, 1234 |
| Hpy188I | TCNGA | 7 cut(s) | 19, 126, 250, 430, 463, 670, 1132 |
| Hpy188III | TCNNGA | 7 cut(s) | 291, 785, 938, 1283, 1290, 1583, 1700 |
| Hpy8I | GTNNAC | 2 cut(s) | 1043, 1234 |
| Hpy99I | CGWCG | 2 cut(s) | 292, 1243 |
| HpyAV | CCTTC | 2 cut(s) | 1224, 1527 |
| HpyCH4IV | ACGT | 3 cut(s) | 287, 1238, 1323 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 139, 338, 347, 368, 863, 1434, 1560 |
| HpyF3I | CTNAG | 7 cut(s) | 189, 675, 702, 909, 936, 1162, 1170 |
| HpySE526I | ACGT | 3 cut(s) | 287, 1238, 1323 |
| Hsp92I | GRCGYC | 2 cut(s) | 5, 287 |
| Hsp92II | CATG | 7 cut(s) | 281, 350, 376, 1049, 1261, 1472, 1764 |
| Kzo9I | GATC | 2 cut(s) | 1502, 1545 |
| LguI | GCTCTTC | 1 cut(s) | 480 |
| LmnI | GCTCC | 3 cut(s) | 152, 763, 1037 |
| Lsp1109I | GCAGC | 4 cut(s) | 328, 349, 1041, 1362 |
| LweI | GCATC | 5 cut(s) | 117, 129, 505, 1156, 1518 |
| MaeI | CTAG | 4 cut(s) | 156, 1098, 1700, 1788 |
| MaeII | ACGT | 3 cut(s) | 287, 1238, 1323 |
| MaeIII | GTNAC | 4 cut(s) | 832, 859, 1225, 1342 |
| MalI | GATC | 2 cut(s) | 1504, 1547 |
| MboI | GATC | 2 cut(s) | 1502, 1545 |
| MflI | RGATCY | 1 cut(s) | 1502 |
| MlsI | TGGCCA | 1 cut(s) | 1428 |
| MluNI | TGGCCA | 1 cut(s) | 1428 |
| MlyI | GAGTC | 1 cut(s) | 656 |
| MmeI | TCCRAC | 2 cut(s) | 408, 1059 |
| Mox20I | TGGCCA | 1 cut(s) | 1428 |
| MscI | TGGCCA | 1 cut(s) | 1428 |
| MseI | TTAA | 7 cut(s) | 69, 396, 567, 600, 1320, 1659, 1695 |
| MslI | CAYNNNNRTG | 1 cut(s) | 351 |
| Msp20I | TGGCCA | 1 cut(s) | 1428 |
| MspI | CCGG | 1 cut(s) | 550 |
| MspR9I | CCNGG | 1 cut(s) | 551 |
| Mva1269I | GAATGC | 1 cut(s) | 664 |
| MvnI | CGCG | 1 cut(s) | 133 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 139, 338, 347, 368, 863, 1434, 1560 |
| NciI | CCSGG | 1 cut(s) | 551 |
| NcoI | CCATGG | 1 cut(s) | 1257 |
| NdeI | CATATG | 1 cut(s) | 1594 |
| NdeII | GATC | 2 cut(s) | 1502, 1545 |
| NlaIII | CATG | 7 cut(s) | 281, 350, 376, 1049, 1261, 1472, 1764 |
| NlaIV | GGNNCC | 5 cut(s) | 548, 765, 789, 906, 1766 |
| NmeAIII | GCCGAG | 1 cut(s) | 370 |
| NmuCI | GTSAC | 1 cut(s) | 859 |
| NspI | RCATGY | 1 cut(s) | 350 |
| PciSI | GCTCTTC | 1 cut(s) | 480 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 130 |
| PctI | GAATGC | 1 cut(s) | 664 |
| PfeI | GAWTC | 7 cut(s) | 121, 407, 443, 1088, 1279, 1286, 1757 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1505 |
| PkrI | GCNGC | 5 cut(s) | 132, 343, 364, 1031, 1377 |
| PleI | GAGTC | 1 cut(s) | 655 |
| PpsI | GAGTC | 1 cut(s) | 655 |
| PsiI | TTATAA | 1 cut(s) | 1665 |
| PspN4I | GGNNCC | 5 cut(s) | 548, 765, 789, 906, 1766 |
| PspPI | GGNCC | 4 cut(s) | 45, 185, 380, 823 |
| PstNI | CAGNNNCTG | 1 cut(s) | 863 |
| PsuI | RGATCY | 1 cut(s) | 1502 |
| RsaI | GTAC | 6 cut(s) | 83, 261, 319, 1095, 1105, 1148 |
| RsaNI | GTAC | 6 cut(s) | 82, 260, 318, 1094, 1104, 1147 |
| RseI | CAYNNNNRTG | 1 cut(s) | 351 |
| SapI | GCTCTTC | 1 cut(s) | 480 |
| SaqAI | TTAA | 7 cut(s) | 69, 396, 567, 600, 1320, 1659, 1695 |
| SatI | GCNGC | 5 cut(s) | 131, 342, 363, 1030, 1376 |
| Sau3AI | GATC | 2 cut(s) | 1502, 1545 |
| Sau96I | GGNCC | 4 cut(s) | 45, 185, 380, 823 |
| SchI | GAGTC | 1 cut(s) | 656 |
| ScrFI | CCNGG | 1 cut(s) | 551 |
| SfaNI | GCATC | 5 cut(s) | 117, 129, 505, 1156, 1518 |
| SfcI | CTRYAG | 2 cut(s) | 333, 1492 |
| SinI | GGWCC | 2 cut(s) | 380, 823 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 351 |
| SsiI | CCGC | 2 cut(s) | 131, 1637 |
| SspMI | CTAG | 4 cut(s) | 156, 1098, 1700, 1788 |
| StyD4I | CCNGG | 1 cut(s) | 549 |
| StyI | CCWWGG | 2 cut(s) | 533, 1257 |
| TaiI | ACGT | 3 cut(s) | 290, 1241, 1326 |
| TaqI | TCGA | 5 cut(s) | 256, 290, 1548, 1689, 1709 |
| TatI | WGTACW | 1 cut(s) | 81 |
| TauI | GCSGC | 1 cut(s) | 133 |
| TfiI | GAWTC | 7 cut(s) | 121, 407, 443, 1088, 1279, 1286, 1757 |
| Tru1I | TTAA | 7 cut(s) | 69, 396, 567, 600, 1320, 1659, 1695 |
| Tru9I | TTAA | 7 cut(s) | 69, 396, 567, 600, 1320, 1659, 1695 |
| TscAI | CASTG | 2 cut(s) | 868, 905 |
| TseFI | GTSAC | 1 cut(s) | 859 |
| TseI | GCWGC | 4 cut(s) | 341, 362, 1029, 1375 |
| Tsp45I | GTSAC | 1 cut(s) | 859 |
| TspGWI | ACGGA | 2 cut(s) | 1492, 1794 |
| TspRI | CASTG | 2 cut(s) | 868, 905 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1505 |
| VpaK11BI | GGWCC | 2 cut(s) | 380, 823 |
| XapI | RAATTY | 8 cut(s) | 91, 193, 252, 464, 1082, 1268, 1388, 1733 |
| XbaI | TCTAGA | 1 cut(s) | 1699 |
| XceI | RCATGY | 1 cut(s) | 350 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 540, 1436 |
| XmiI | GTMKAC | 1 cut(s) | 1042 |
| XspI | CTAG | 4 cut(s) | 156, 1098, 1700, 1788 |
| ZraI | GACGTC | 1 cut(s) | 288 |