Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003276

Physical Location & Seq

Genomic Coordinates Reverse (-)

39593203 .. 39594957

Gene Structure 1755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00418040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1755 bp

ATGGGCAAGAGGCCCAGAGTGGATGAAACTGTGGTTGAATGGGAGAAGTACAGTGAAAATTTTGATTTTGCTAAAGATGGATTGGTGAATCGAATGCCACGTAGGATGCCAACCATGGGAGCTAGAAAGGGTCGTATGAGAGGAAAAGGAGGGCCTGAGAATTTAAATTGCAGTTATAGAGGTGTTAGGCAGAGGATTTGGGGCAAGTGGGTTTCTGAAATTCGAGTACCAAGTACTAATACACATGGTTTGACATCGAGAAAGGTTGGTCGTCTGTGGCTTGGCACTTTTGATACTGCTGTAGAAGCTGCACATGCTTATGATAAAGCTGCAAAGGCCATGTATGGTCCTGTGGCTCGGCTTAATTTCCCCGAATCTTTGGAACCATCAATGTCGGATGAGACCACAGAATCGTGTGATAATGCGTCTGAATTTGAGGATGGTGTGGGTGAAGAGCCAAAGCAGGAAGATGAGGTGTTTCATGCAACTGTAAAAGAGCCAAGTAATGAATGGCACTGGGAAGCTAACAGTATTAAATGCGAATTACAAATGGAGGACGAGCTTGTTAATAATGATGTAGAAGTTGAAGAACTGGCTATCAACAATGTAAGGGAGTCAGTAGATGAATGGCATTCAGAACCTAAGTATGTGAAATGTGAATTGCAAACTGAGGACCAGTTTGTTAATGTAGAAGTTGAAGCACTCGCTATGAACAATGTAAGGGAGCCTGAAGATGTATGGCCTTGGGAACCTAAGTATGTGAAATGTGATTTGGAAAATGAGGACCAGCATGTTACAAATGATGTTGAAGTTGAAGCAGTCACTACAAACAATGTAAGGGACTATGAAGATGTATGGCAGTGGGAACCTAAGTATGTAAAATGCGATTTGGAAGCTCAGGACGAGCTTCTTCAAAGTAAAGCTGAAGTCGAAAGACTTGCTATGAACAATGTAACAAAGGAGGAATTTCAAGCCGTGAGTTATGTTGGCAGCTCCAACCATAGACATGATAATCACTTGGATAATTATCTTCAGGTTGGGAAATTTGATTCAGTACCTAATGATACGCCTTGTACTAATTTGGACTTTTCAGATATTTTTTCGAGGTACAGTAATGATTACTTAGATGCTGAGCTTGTAGATGTGAAATGCAATCCAAAAAATGATTGCAACCCTTCAAATGATGTTACAGTTGACACGCCGGTAGTGAGCAAACCCATGGAGAAAGAATCTGTTGTGATTCTGGAATCTGGAGACAACAATCTGCATAATGAACCGATAAATGTGGCAAGCAACAATCTGGTAACTAATTTGGGTGAATCTGAAAAGACTGTGCTGCCTCCTAATGAATTTCAGGGTGATATTGCAGAAACTATGAAACCAAATGGCCATAATAGCTTTGGTGATAATAATGCTTGCTTGCAGGAACATTATGAACGGATAAATGTGGCCGACAGTCCAAGATCTAGCATCAAGCCTTCAACAGATATTGAAACGCAGAAACAGATCGACAGCAAACTCGGCTACTTGCATAGTTGGTCTCTTGATAAAACATATGGCATTGAGCTACATAATCTTCCTAATCAGTTGCAGATAGCGGATGGCCTATCTGGAAGCTTTAATTATATGGAGGAAGAATGTTCAGGTGTCGATTTTAATCTAGATTGGTCGAGGCAAAATTACTTTTCGGGTGACTTTGAAGAGAGTGCATTGCCTGATTCATGGTTCCCATACCATCACGGAGGCTCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

584

Amino Acids

66.57

Weight (kDa)

4.54

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	58 - 116	9.7e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10690
malus_domestica	MD04G1165400.v1.1 MD12G1179500.v1.1
prunus_persica	Prupe.6G284400_v2.0.a1 Prupe.6G284400_v2.0.a1
pyrus_communis	pycom04g14750 pycom12g16930
rosa_chinensis	RchiOBHm_Chr3g0461691 RchiOBHm_Chr6g0312551
rosa_laevigata	RLG00000010317 RLG00000024905
rosa_multiflora	Rmu_co8045116.1_g000001 Rmu_co8349119.1_g000001 Rmu_sc0003094.1_g000012 Rmu_sc0008363.1_g000007 Rmu_sc0038320.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048580 Rroxscaffold_2G00101990 Rroxscaffold_4G00310750 Rroxscaffold_6G00418040
rosa_rugosa	Rorug05G0531400 Rorug05G0531400 Rorug06G0396500
rosa_samantha	Rh3AG111200 Rh3BG114200 Rh3CG116400 Rh3DG116100 Rh4DG219100 Rh6AG513900 Rh6AG514000 Rh6BG525800 Rh6BG525900 Rh6CG530900 Rh6CG531000 Rh6DG516200 Rh6DG516300
rosa_wichuraiana	Rw3G009410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1598
AcoI	YGGCCR	2 cut(s)	1387, 1449
AcsI	RAATTY	7 cut(s)	58, 160, 219, 431, 965, 1043, 1349
AcuI	CTGAAG	3 cut(s)	750, 945, 1016
AfaI	GTAC	6 cut(s)	50, 228, 235, 1056, 1075, 1109
AfiI	CCNNNNNNNGG	1 cut(s)	116
AjuI	GAANNNNNNNTTGG	2 cut(s)	755, 787
Alw26I	GTCTC	3 cut(s)	395, 1248, 1545
AoxI	GGCC	7 cut(s)	11, 152, 336, 740, 1387, 1449, 1603
ApeKI	GCWGC	4 cut(s)	308, 329, 990, 1336
ApoI	RAATTY	7 cut(s)	58, 160, 219, 431, 965, 1043, 1349
AspS9I	GGNCC	5 cut(s)	12, 152, 347, 673, 784
AsuHPI	GGTGA	6 cut(s)	97, 461, 1328, 1370, 1415, 1703
AvaII	GGWCC	3 cut(s)	347, 673, 784
BaeI	ACNNNNGTAYC	2 cut(s)	285, 318
BalI	TGGCCA	1 cut(s)	1389
BbvI	GCAGC	4 cut(s)	295, 316, 1002, 1323
BccI	CCATC	5 cut(s)	71, 394, 434, 1595, 1743
BceAI	ACGGC	1 cut(s)	959
BcgI	CGANNNNNNTGC	2 cut(s)	920, 954
BcoDI	GTCTC	3 cut(s)	395, 1248, 1545
BfaI	CTAG	4 cut(s)	123, 1467, 1661, 1749
BfmI	CTRYAG	1 cut(s)	300
BglII	AGATCT	1 cut(s)	1463
BisI	GCNGC	4 cut(s)	309, 330, 991, 1337
BlpI	GCTNAGC	1 cut(s)	1131
BlsI	GCNGC	4 cut(s)	310, 331, 992, 1338
BmcAI	AGTACT	1 cut(s)	235
Bme18I	GGWCC	3 cut(s)	347, 673, 784
BmgT120I	GGNCC	5 cut(s)	12, 152, 347, 673, 784
BmiI	GGNNCC	5 cut(s)	384, 726, 750, 867, 1727
BmrI	ACTGGG	1 cut(s)	526
BmsI	GCATC	3 cut(s)	96, 1117, 1479
BmuI	ACTGGG	1 cut(s)	526
BpmI	CTGGAG	1 cut(s)	1272
Bpu10I	CCTNAGC	1 cut(s)	897
Bpu1102I	GCTNAGC	1 cut(s)	1131
BsaAI	YACGTR	1 cut(s)	101
BsaBI	GATNNNNATC	2 cut(s)	1026, 1656
BsaI	GGTCTC	2 cut(s)	395, 1545
BsaJI	CCNNGG	3 cut(s)	114, 743, 1218
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse118I	RCCGGY	1 cut(s)	1201
Bse1I	ACTGG	3 cut(s)	521, 597, 676
Bse3DI	GCAATG	1 cut(s)	1709
Bse8I	GATNNNNATC	2 cut(s)	1026, 1656
BseDI	CCNNGG	3 cut(s)	114, 743, 1218
BseGI	GGATG	5 cut(s)	28, 111, 403, 445, 1606
BseJI	GATNNNNATC	2 cut(s)	1026, 1656
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	1709
BseMII	CTCAG	4 cut(s)	147, 660, 911, 1122
BseNI	ACTGG	3 cut(s)	521, 597, 676
BseXI	GCAGC	4 cut(s)	295, 316, 1002, 1323
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	7 cut(s)	13, 154, 338, 742, 1389, 1451, 1605
BsiSI	CCGG	1 cut(s)	1202
BslFI	GGGAC	1 cut(s)	854
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	3 cut(s)	395, 1248, 1545
BsmFI	GGGAC	1 cut(s)	854
BsmI	GAATGC	2 cut(s)	99, 631
BsnI	GGCC	7 cut(s)	13, 154, 338, 742, 1389, 1451, 1605
Bso31I	GGTCTC	2 cut(s)	395, 1545
Bsp143I	GATC	2 cut(s)	1463, 1506
Bsp1720I	GCTNAGC	1 cut(s)	1131
Bsp19I	CCATGG	2 cut(s)	114, 1218
BspACI	CCGC	1 cut(s)	1598
BspANI	GGCC	7 cut(s)	13, 154, 338, 742, 1389, 1451, 1605
BspCNI	CTCAG	4 cut(s)	148, 661, 910, 1123
BspLI	GGNNCC	5 cut(s)	384, 726, 750, 867, 1727
BspQI	GCTCTTC	1 cut(s)	447
BspTNI	GGTCTC	2 cut(s)	395, 1545
BsrDI	GCAATG	1 cut(s)	1709
BsrFI	RCCGGY	1 cut(s)	1201
BsrI	ACTGG	3 cut(s)	521, 597, 676
BssAI	RCCGGY	1 cut(s)	1201
BssECI	CCNNGG	3 cut(s)	114, 743, 1218
BssMI	GATC	2 cut(s)	1463, 1506
BssT1I	CCWWGG	3 cut(s)	114, 743, 1218
Bst4CI	ACNGT	8 cut(s)	31, 53, 490, 530, 1112, 1192, 1333, 1457
Bst6I	CTCTTC	2 cut(s)	447, 1695
BstBAI	YACGTR	1 cut(s)	101
BstC8I	GCNNGC	3 cut(s)	1291, 1417, 1421
BstDEI	CTNAG	8 cut(s)	156, 642, 669, 753, 870, 897, 1123, 1131
BstDSI	CCRYGG	2 cut(s)	114, 1218
BstF5I	GGATG	5 cut(s)	28, 111, 403, 445, 1606
BstKTI	GATC	2 cut(s)	1466, 1509
BstMAI	GTCTC	3 cut(s)	395, 1248, 1545
BstMBI	GATC	2 cut(s)	1463, 1506
BstMWI	GCNNNNNNNGC	5 cut(s)	305, 314, 335, 1395, 1521
BstNSI	RCATGY	2 cut(s)	317, 794
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	4 cut(s)	295, 316, 1002, 1323
BstX2I	RGATCY	1 cut(s)	1463
BstYI	RGATCY	1 cut(s)	1463
BsuRI	GGCC	7 cut(s)	13, 154, 338, 742, 1389, 1451, 1605
BtgI	CCRYGG	2 cut(s)	114, 1218
BtsCI	GGATG	5 cut(s)	28, 111, 403, 445, 1606
BtsI	GCAGTG	1 cut(s)	866
BtsIMutI	CAGTG	3 cut(s)	58, 514, 866
Cac8I	GCNNGC	3 cut(s)	1291, 1417, 1421
Cfr10I	RCCGGY	1 cut(s)	1201
Cfr13I	GGNCC	5 cut(s)	12, 152, 347, 673, 784
CseI	GACGC	1 cut(s)	414
Csp6I	GTAC	6 cut(s)	49, 227, 234, 1055, 1074, 1108
CviAII	CATG	9 cut(s)	115, 245, 314, 340, 482, 791, 1007, 1219, 1722
CviQI	GTAC	6 cut(s)	49, 227, 234, 1055, 1074, 1108
DdeI	CTNAG	8 cut(s)	156, 642, 669, 753, 870, 897, 1123, 1131
DpnI	GATC	2 cut(s)	1465, 1508
DpnII	GATC	2 cut(s)	1463, 1506
DraI	TTTAAA	1 cut(s)	165
EaeI	YGGCCR	2 cut(s)	1387, 1449
Eam1104I	CTCTTC	2 cut(s)	447, 1695
EarI	CTCTTC	2 cut(s)	447, 1695
Eco130I	CCWWGG	3 cut(s)	114, 743, 1218
Eco31I	GGTCTC	2 cut(s)	395, 1545
Eco47I	GGWCC	3 cut(s)	347, 673, 784
Eco57I	CTGAAG	3 cut(s)	750, 945, 1016
EcoO109I	RGGNCCY	1 cut(s)	152
EcoT14I	CCWWGG	3 cut(s)	114, 743, 1218
ErhI	CCWWGG	3 cut(s)	114, 743, 1218
FaeI	CATG	9 cut(s)	118, 248, 317, 343, 485, 794, 1010, 1222, 1725
FaqI	GGGAC	1 cut(s)	854
FatI	CATG	9 cut(s)	114, 244, 313, 339, 481, 790, 1006, 1218, 1721
FauNDI	CATATG	1 cut(s)	1555
Fnu4HI	GCNGC	4 cut(s)	309, 330, 991, 1337
FokI	GGATG	5 cut(s)	35, 118, 410, 452, 1613
Fsp4HI	GCNGC	4 cut(s)	309, 330, 991, 1337
FspBI	CTAG	4 cut(s)	123, 1467, 1661, 1749
GluI	GCNGC	4 cut(s)	309, 330, 991, 1337
GsuI	CTGGAG	1 cut(s)	1272
HaeIII	GGCC	7 cut(s)	13, 154, 338, 742, 1389, 1451, 1605
HapII	CCGG	1 cut(s)	1202
HgaI	GACGC	1 cut(s)	414
Hin1II	CATG	9 cut(s)	118, 248, 317, 343, 485, 794, 1010, 1222, 1725
HincII	GTYRAC	1 cut(s)	1195
HindII	GTYRAC	1 cut(s)	1195
HindIII	AAGCTT	1 cut(s)	1615
HpaII	CCGG	1 cut(s)	1202
HphI	GGTGA	6 cut(s)	97, 461, 1328, 1370, 1415, 1703
Hpy166II	GTNNAC	1 cut(s)	1195
Hpy188I	TCNGA	6 cut(s)	217, 397, 430, 637, 1093, 1324
Hpy188III	TCNNGA	7 cut(s)	258, 899, 1244, 1251, 1544, 1611, 1661
Hpy8I	GTNNAC	1 cut(s)	1195
HpyAV	CCTTC	2 cut(s)	1185, 1488
HpyCH4III	ACNGT	8 cut(s)	31, 53, 490, 530, 1112, 1192, 1333, 1457
HpyCH4IV	ACGT	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	5 cut(s)	305, 314, 335, 1395, 1521
HpyF3I	CTNAG	8 cut(s)	156, 642, 669, 753, 870, 897, 1123, 1131
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	9 cut(s)	118, 248, 317, 343, 485, 794, 1010, 1222, 1725
Kzo9I	GATC	2 cut(s)	1463, 1506
LguI	GCTCTTC	1 cut(s)	447
LmnI	GCTCC	3 cut(s)	119, 724, 998
Lsp1109I	GCAGC	4 cut(s)	295, 316, 1002, 1323
LweI	GCATC	3 cut(s)	96, 1117, 1479
MaeI	CTAG	4 cut(s)	123, 1467, 1661, 1749
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	6 cut(s)	793, 820, 952, 1186, 1303, 1691
MalI	GATC	2 cut(s)	1465, 1508
MboI	GATC	2 cut(s)	1463, 1506
MflI	RGATCY	1 cut(s)	1463
MlsI	TGGCCA	1 cut(s)	1389
MluNI	TGGCCA	1 cut(s)	1389
MlyI	GAGTC	1 cut(s)	623
MmeI	TCCRAC	2 cut(s)	375, 1020
Mox20I	TGGCCA	1 cut(s)	1389
MscI	TGGCCA	1 cut(s)	1389
MseI	TTAA	7 cut(s)	164, 363, 534, 567, 684, 1620, 1656
MslI	CAYNNNNRTG	2 cut(s)	318, 1005
Msp20I	TGGCCA	1 cut(s)	1389
MspI	CCGG	1 cut(s)	1202
Mva1269I	GAATGC	2 cut(s)	99, 631
MwoI	GCNNNNNNNGC	5 cut(s)	305, 314, 335, 1395, 1521
NcoI	CCATGG	2 cut(s)	114, 1218
NdeI	CATATG	1 cut(s)	1555
NdeII	GATC	2 cut(s)	1463, 1506
NlaIII	CATG	9 cut(s)	118, 248, 317, 343, 485, 794, 1010, 1222, 1725
NlaIV	GGNNCC	5 cut(s)	384, 726, 750, 867, 1727
NmeAIII	GCCGAG	2 cut(s)	337, 1500
NmuCI	GTSAC	2 cut(s)	820, 1691
NspI	RCATGY	2 cut(s)	317, 794
PciSI	GCTCTTC	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	97
PctI	GAATGC	2 cut(s)	99, 631
PfeI	GAWTC	9 cut(s)	88, 374, 410, 1049, 1229, 1240, 1247, 1319, 1718
PkrI	GCNGC	4 cut(s)	310, 331, 992, 1338
PleI	GAGTC	1 cut(s)	622
PpsI	GAGTC	1 cut(s)	622
Ppu21I	YACGTR	1 cut(s)	101
PspN4I	GGNNCC	5 cut(s)	384, 726, 750, 867, 1727
PspPI	GGNCC	5 cut(s)	12, 152, 347, 673, 784
PsuI	RGATCY	1 cut(s)	1463
RsaI	GTAC	6 cut(s)	50, 228, 235, 1056, 1075, 1109
RsaNI	GTAC	6 cut(s)	49, 227, 234, 1055, 1074, 1108
RseI	CAYNNNNRTG	2 cut(s)	318, 1005
SapI	GCTCTTC	1 cut(s)	447
SaqAI	TTAA	7 cut(s)	164, 363, 534, 567, 684, 1620, 1656
SatI	GCNGC	4 cut(s)	309, 330, 991, 1337
Sau3AI	GATC	2 cut(s)	1463, 1506
Sau96I	GGNCC	5 cut(s)	12, 152, 347, 673, 784
ScaI	AGTACT	1 cut(s)	235
SchI	GAGTC	1 cut(s)	623
SfaNI	GCATC	3 cut(s)	96, 1117, 1479
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	3 cut(s)	347, 673, 784
SmiI	ATTTAAAT	1 cut(s)	165
SmiMI	CAYNNNNRTG	2 cut(s)	318, 1005
SsiI	CCGC	1 cut(s)	1598
SspMI	CTAG	4 cut(s)	123, 1467, 1661, 1749
StyI	CCWWGG	3 cut(s)	114, 743, 1218
SwaI	ATTTAAAT	1 cut(s)	165
TaaI	ACNGT	8 cut(s)	31, 53, 490, 530, 1112, 1192, 1333, 1457
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	8 cut(s)	91, 223, 257, 930, 1103, 1509, 1650, 1670
TatI	WGTACW	3 cut(s)	48, 233, 1073
TfiI	GAWTC	9 cut(s)	88, 374, 410, 1049, 1229, 1240, 1247, 1319, 1718
Tru1I	TTAA	7 cut(s)	164, 363, 534, 567, 684, 1620, 1656
Tru9I	TTAA	7 cut(s)	164, 363, 534, 567, 684, 1620, 1656
TscAI	CASTG	3 cut(s)	58, 521, 866
TseFI	GTSAC	2 cut(s)	820, 1691
TseI	GCWGC	4 cut(s)	308, 329, 990, 1336
Tsp45I	GTSAC	2 cut(s)	820, 1691
TspGWI	ACGGA	2 cut(s)	1453, 1755
TspRI	CASTG	3 cut(s)	58, 521, 866
VpaK11BI	GGWCC	3 cut(s)	347, 673, 784
XapI	RAATTY	7 cut(s)	58, 160, 219, 431, 965, 1043, 1349
XbaI	TCTAGA	1 cut(s)	1660
XceI	RCATGY	2 cut(s)	317, 794
XcmI	CCANNNNNNNNNTGG	2 cut(s)	507, 1397
XspI	CTAG	4 cut(s)	123, 1467, 1661, 1749
ZrmI	AGTACT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.