Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003276

Physical Location & Seq

Genomic Coordinates Forward (+)

68405975 .. 68406424

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG513900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGATGCCTGAGAGTTCAGACGGGGATAGACAAATGGGCAAGAGGCCCAGAGTTGATGATACTTTGGTTAAATGGGACAAGTACAATGAAAATTCTGATTTTGCAAAAGATGGATTTGTCAATCGAATGCCACATAAAATGCCAACCACAGGAGCTAGAAAGGGTTGTATGAGAGGAAAAGGGGGGCCTGAGAATTTAAATTCCAGTTATAGAGGTGTTAGCCAGGGGATTTGGGGCAAATGGGTTTCTGAAAGTCGAGTGCCAAGTAGTAATACACATGGTCTGACGTTGAAGAAGGTTGCTCGTTCATGGCTTGGTACTTTTGATACTGCTGTTGAAGTTGCACTTGCTTATGATAAAGCTGCAAAGGCCATGTATGGTCCTGTGGCTAGGCTTAACTTCCCCAAGTCTTTGGAAACATCAATCTCGGATGAGACCACAGAATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

149

Amino Acids

16.49

Weight (kDa)

9.38

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	69 - 127	7.5e-09	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10690
malus_domestica	MD04G1165400.v1.1 MD12G1179500.v1.1
prunus_persica	Prupe.6G284400_v2.0.a1 Prupe.6G284400_v2.0.a1
pyrus_communis	pycom04g14750 pycom12g16930
rosa_chinensis	RchiOBHm_Chr3g0461691 RchiOBHm_Chr6g0312551
rosa_laevigata	RLG00000010317 RLG00000024905
rosa_multiflora	Rmu_co8045116.1_g000001 Rmu_co8349119.1_g000001 Rmu_sc0003094.1_g000012 Rmu_sc0008363.1_g000007 Rmu_sc0038320.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048580 Rroxscaffold_2G00101990 Rroxscaffold_4G00310750 Rroxscaffold_6G00418040
rosa_rugosa	Rorug05G0531400 Rorug05G0531400 Rorug06G0396500
rosa_samantha	Rh3AG111200 Rh3BG114200 Rh3CG116400 Rh3DG116100 Rh4DG219100 Rh6AG513900 Rh6AG514000 Rh6BG525800 Rh6BG525900 Rh6CG530900 Rh6CG531000 Rh6DG516200 Rh6DG516300
rosa_wichuraiana	Rw3G009410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	91, 193, 199
AfaI	GTAC	2 cut(s)	83, 319
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	2 cut(s)	292, 338
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	2 cut(s)	155, 362
AluI	AGCT	2 cut(s)	155, 362
Alw26I	GTCTC	1 cut(s)	428
AoxI	GGCC	3 cut(s)	44, 185, 369
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	3 cut(s)	91, 193, 199
AspS9I	GGNCC	3 cut(s)	45, 185, 380
AvaII	GGWCC	1 cut(s)	380
BaeI	ACNNNNGTAYC	4 cut(s)	51, 84, 318, 351
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	2 cut(s)	156, 390
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	3 cut(s)	45, 185, 380
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	349
BshFI	GGCC	3 cut(s)	46, 187, 371
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	428
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	132
BsnI	GGCC	3 cut(s)	46, 187, 371
Bso31I	GGTCTC	1 cut(s)	428
BspANI	GGCC	3 cut(s)	46, 187, 371
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	186
BspTNI	GGTCTC	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	224
BstDEI	CTNAG	2 cut(s)	9, 189
BstF5I	GGATG	1 cut(s)	436
BstMAI	GTCTC	1 cut(s)	428
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	349
BstXI	CCANNNNNNTGG	1 cut(s)	412
BsuRI	GGCC	3 cut(s)	46, 187, 371
BtsCI	GGATG	1 cut(s)	436
Cfr13I	GGNCC	3 cut(s)	45, 185, 380
Csp6I	GTAC	2 cut(s)	82, 318
CviAII	CATG	3 cut(s)	278, 309, 373
CviJI	RGCY	9 cut(s)	46, 155, 187, 222, 313, 362, 371, 389, 394
CviKI_1	RGCY	9 cut(s)	46, 155, 187, 222, 313, 362, 371, 389, 394
CviQI	GTAC	2 cut(s)	82, 318
DdeI	CTNAG	2 cut(s)	9, 189
DraI	TTTAAA	1 cut(s)	198
Eco31I	GGTCTC	1 cut(s)	428
Eco47I	GGWCC	1 cut(s)	380
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	222
FaeI	CATG	3 cut(s)	281, 312, 376
FaiI	YATR	8 cut(s)	135, 170, 210, 279, 310, 354, 374, 378
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	3 cut(s)	277, 308, 372
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	1 cut(s)	443
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	2 cut(s)	156, 390
GluI	GCNGC	1 cut(s)	363
HaeIII	GGCC	3 cut(s)	46, 187, 371
Hin1II	CATG	3 cut(s)	281, 312, 376
HinfI	GANTC	1 cut(s)	443
Hpy188I	TCNGA	5 cut(s)	19, 97, 250, 285, 430
Hpy188III	TCNNGA	1 cut(s)	447
HpyAV	CCTTC	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	3 cut(s)	104, 344, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	2 cut(s)	9, 189
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	3 cut(s)	281, 312, 376
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	8 cut(s)	21, 61, 135, 201, 209, 217, 236, 396
Lsp1109I	GCAGC	1 cut(s)	349
MaeI	CTAG	2 cut(s)	156, 390
MaeII	ACGT	1 cut(s)	287
MboII	GAAGA	1 cut(s)	304
MluCI	AATT	3 cut(s)	91, 193, 199
MnlI	CCTC	3 cut(s)	36, 167, 206
MseI	TTAA	3 cut(s)	69, 197, 396
MspR9I	CCNGG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	368
NlaIII	CATG	3 cut(s)	281, 312, 376
NlaIV	GGNNCC	1 cut(s)	186
PctI	GAATGC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	443
PkrI	GCNGC	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	3 cut(s)	45, 185, 380
RsaI	GTAC	2 cut(s)	83, 319
RsaNI	GTAC	2 cut(s)	82, 318
SaqAI	TTAA	3 cut(s)	69, 197, 396
SatI	GCNGC	1 cut(s)	363
Sau96I	GGNCC	3 cut(s)	45, 185, 380
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	5 cut(s)	157, 217, 290, 300, 364
SinI	GGWCC	1 cut(s)	380
SmiI	ATTTAAAT	1 cut(s)	198
Sse9I	AATT	3 cut(s)	91, 193, 199
SspMI	CTAG	2 cut(s)	156, 390
StyD4I	CCNGG	1 cut(s)	222
SwaI	ATTTAAAT	1 cut(s)	198
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	2 cut(s)	124, 256
TasI	AATT	3 cut(s)	91, 193, 199
TatI	WGTACW	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	3 cut(s)	69, 197, 396
Tru9I	TTAA	3 cut(s)	69, 197, 396
TseI	GCWGC	1 cut(s)	362
TspDTI	ATGAA	2 cut(s)	102, 297
VpaK11BI	GGWCC	1 cut(s)	380
XapI	RAATTY	3 cut(s)	91, 193, 199
XspI	CTAG	2 cut(s)	156, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.