Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8045116.1

Orthogroup ID

OG0003276

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 503

Gene Structure 502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8045116.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 502 bp

atgggcaagaggcccagagtggatgaaactgtcgttaaatgggagaagtacagtaaaaattttgattttgctaaagatggattggtgaatcggatgccacgtaggatgccaaccgtgggagctagaaagggtcgtatgagaggaaaaggagggcctgagaatttgaattgcagttatagaggtgttaggcagaggatttggggcaagtgggtttctgaaattcgagtaccaaatgctaatacacatggtttgacgtcgagaaaggttggtcgtctgtggcttggtacttttgatactgctgtagaagctgcacatgcttatgataaagctgcaaaggccatgtatggtcctgtggctcggcttaatttccccgaatctttggaaacatcaatgtcggatgagaccacagaatcgtgtgataatgcgtctgaatttgaggatggtgtgggtgaagagccaaagcaggaagatgaggtgtttgatgcaactgtaaaagagccaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

167

Amino Acids

18.82

Weight (kDa)

8.52

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10690
malus_domestica	MD04G1165400.v1.1 MD12G1179500.v1.1
prunus_persica	Prupe.6G284400_v2.0.a1 Prupe.6G284400_v2.0.a1
pyrus_communis	pycom04g14750 pycom12g16930
rosa_chinensis	RchiOBHm_Chr3g0461691 RchiOBHm_Chr6g0312551
rosa_laevigata	RLG00000010317 RLG00000024905
rosa_multiflora	Rmu_co8045116.1_g000001 Rmu_co8349119.1_g000001 Rmu_sc0003094.1_g000012 Rmu_sc0008363.1_g000007 Rmu_sc0038320.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048580 Rroxscaffold_2G00101990 Rroxscaffold_4G00310750 Rroxscaffold_6G00418040
rosa_rugosa	Rorug05G0531400 Rorug05G0531400 Rorug06G0396500
rosa_samantha	Rh3AG111200 Rh3BG114200 Rh3CG116400 Rh3DG116100 Rh4DG219100 Rh6AG513900 Rh6AG514000 Rh6BG525800 Rh6BG525900 Rh6CG530900 Rh6CG531000 Rh6DG516200 Rh6DG516300
rosa_wichuraiana	Rw3G009410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	257
AcsI	RAATTY	4 cut(s)	58, 160, 219, 431
AcyI	GRCGYC	1 cut(s)	254
AfaI	GTAC	3 cut(s)	50, 228, 286
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	166
AluBI	AGCT	3 cut(s)	122, 308, 329
AluI	AGCT	3 cut(s)	122, 308, 329
Alw26I	GTCTC	1 cut(s)	395
AoxI	GGCC	3 cut(s)	11, 152, 336
ApeKI	GCWGC	2 cut(s)	308, 329
ApoI	RAATTY	4 cut(s)	58, 160, 219, 431
AspS9I	GGNCC	3 cut(s)	12, 152, 347
AsuHPI	GGTGA	2 cut(s)	97, 461
AvaII	GGWCC	1 cut(s)	347
BaeI	ACNNNNGTAYC	2 cut(s)	285, 318
BbvI	GCAGC	2 cut(s)	295, 316
BccI	CCATC	2 cut(s)	71, 434
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	300
BisI	GCNGC	2 cut(s)	309, 330
BlsI	GCNGC	2 cut(s)	310, 331
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	3 cut(s)	12, 152, 347
BmsI	GCATC	3 cut(s)	84, 96, 472
BsaAI	YACGTR	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	5 cut(s)	28, 99, 111, 403, 445
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	295, 316
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	3 cut(s)	13, 154, 338
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	395
BsnI	GGCC	3 cut(s)	13, 154, 338
Bso31I	GGTCTC	1 cut(s)	395
BspANI	GGCC	3 cut(s)	13, 154, 338
BspCNI	CTCAG	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	447
BspTNI	GGTCTC	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	114
BssNI	GRCGYC	1 cut(s)	254
Bst4CI	ACNGT	4 cut(s)	31, 53, 115, 490
Bst6I	CTCTTC	1 cut(s)	447
BstACI	GRCGYC	1 cut(s)	254
BstBAI	YACGTR	1 cut(s)	101
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	5 cut(s)	28, 99, 111, 403, 445
BstMAI	GTCTC	1 cut(s)	395
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 314, 335
BstNSI	RCATGY	1 cut(s)	317
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	295, 316
BsuRI	GGCC	3 cut(s)	13, 154, 338
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	5 cut(s)	28, 99, 111, 403, 445
Cfr13I	GGNCC	3 cut(s)	12, 152, 347
CseI	GACGC	1 cut(s)	414
Csp6I	GTAC	3 cut(s)	49, 227, 285
CviAII	CATG	3 cut(s)	245, 314, 340
CviQI	GTAC	3 cut(s)	49, 227, 285
DdeI	CTNAG	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	152
FaeI	CATG	3 cut(s)	248, 317, 343
FaiI	YATR	7 cut(s)	137, 177, 246, 315, 321, 341, 345
FatI	CATG	3 cut(s)	244, 313, 339
Fnu4HI	GCNGC	2 cut(s)	309, 330
FokI	GGATG	5 cut(s)	35, 106, 118, 410, 452
Fsp4HI	GCNGC	2 cut(s)	309, 330
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	2 cut(s)	309, 330
HaeIII	GGCC	3 cut(s)	13, 154, 338
HgaI	GACGC	1 cut(s)	414
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	3 cut(s)	248, 317, 343
HinfI	GANTC	3 cut(s)	88, 374, 410
HphI	GGTGA	2 cut(s)	97, 461
Hpy188I	TCNGA	4 cut(s)	93, 217, 397, 430
Hpy188III	TCNNGA	1 cut(s)	258
Hpy99I	CGWCG	1 cut(s)	259
HpyCH4III	ACNGT	4 cut(s)	31, 53, 115, 490
HpyCH4IV	ACGT	2 cut(s)	100, 254
HpyCH4V	TGCA	4 cut(s)	171, 311, 332, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 314, 335
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	2 cut(s)	100, 254
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	3 cut(s)	248, 317, 343
LguI	GCTCTTC	1 cut(s)	447
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	4 cut(s)	28, 168, 363, 449
Lsp1109I	GCAGC	2 cut(s)	295, 316
LweI	GCATC	3 cut(s)	84, 96, 472
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	2 cut(s)	100, 254
MboII	GAAGA	2 cut(s)	464, 479
MluCI	AATT	6 cut(s)	58, 160, 166, 219, 364, 431
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	7 cut(s)	3, 134, 143, 173, 186, 430, 466
MseI	TTAA	2 cut(s)	36, 363
MslI	CAYNNNNRTG	1 cut(s)	318
MwoI	GCNNNNNNNGC	3 cut(s)	305, 314, 335
NlaIII	CATG	3 cut(s)	248, 317, 343
NmeAIII	GCCGAG	1 cut(s)	337
NspI	RCATGY	1 cut(s)	317
PciSI	GCTCTTC	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	97
PfeI	GAWTC	3 cut(s)	88, 374, 410
PkrI	GCNGC	2 cut(s)	310, 331
Ppu21I	YACGTR	1 cut(s)	101
PspPI	GGNCC	3 cut(s)	12, 152, 347
RsaI	GTAC	3 cut(s)	50, 228, 286
RsaNI	GTAC	3 cut(s)	49, 227, 285
RseI	CAYNNNNRTG	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	447
SaqAI	TTAA	2 cut(s)	36, 363
SatI	GCNGC	2 cut(s)	309, 330
Sau96I	GGNCC	3 cut(s)	12, 152, 347
SetI	ASST	8 cut(s)	103, 124, 184, 257, 267, 310, 331, 477
SfaNI	GCATC	3 cut(s)	84, 96, 472
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	6 cut(s)	58, 160, 166, 219, 364, 431
SspMI	CTAG	1 cut(s)	123
TaaI	ACNGT	4 cut(s)	31, 53, 115, 490
TaiI	ACGT	2 cut(s)	103, 257
TaqI	TCGA	2 cut(s)	223, 257
TasI	AATT	6 cut(s)	58, 160, 166, 219, 364, 431
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	3 cut(s)	88, 374, 410
Tru1I	TTAA	2 cut(s)	36, 363
Tru9I	TTAA	2 cut(s)	36, 363
TseI	GCWGC	2 cut(s)	308, 329
TspDTI	ATGAA	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	347
XapI	RAATTY	4 cut(s)	58, 160, 219, 431
XceI	RCATGY	1 cut(s)	317
XspI	CTAG	1 cut(s)	123
ZraI	GACGTC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.