Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003276

Physical Location & Seq

Genomic Coordinates Reverse (-)

71975566 .. 71979827

Gene Structure 4262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0531400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1917 bp

ATGGCTTCTCCCTTGGTTCAGTCGAATAAGAGTATGAAAAGGTTGGAATCAAAAAAGTCTCATTCCTGGTGGTGGGACAGTCACATCAGTCCCAAAAACTCTAAGTGGCTTGCAGAGAATCTCGAGGAGATGGACAGGTGCATCAAGCGGATGCTGAAGCTGGTTGAAGAAGATGGGGATTCATTTGCAAAAAAGGCTGAAATGTATTATCAAAAGAGGCCTGAATTGATTTCTCATGTTGAAGATTTTTATCGCTTGTACCGGTCTCTAGCCGAACGTTATGATCATGTGACAGGAGAGCTAAGGAAGAATGTGACCTCAGATCTCCAATCCATGAGCTCATGCATTTCTGACGGTGGTTCAGAACTGCCATCTGCATGGTCCTCTCCTGATCTCCAATCTCAGAGGCTGAGTCGTCGTAAATCTGGCCCTCGTGCTGCTGGCTTTGATTTCTTCCTTGGCCCCAGTGGAAACAGCTCGGATAATTACCAGAAAGAAGGGGAAGAATCATCTTCGTTAACAGATTCTGAGCCAGAATCTGATGACGATGATTCTTCAGTCAACAATTACTCTGGGGTGTTGTCAAATGGAGGTGATCAAGGGCAGCAGAAGAAGATAATTCAATTGGAAATCGAGCTTCGTGAAGCGAGGGAGAAGCTTCGGCTGCAGGAAGAGAATGCAGATAGTCCATTGAGGGGGTCAAAAAATGAGAAGTCCGAGGAATTTTCTGCAAAAATTGCAGAATATGCTCAAGAGCTGATGATTGCAAATGAAAAATTACAGGCCTCAGAGGAACAGATTTCCAGGTTGAACATTGAGCTCAAATGGTATAAATCATCAGAAAATGGCAATGCCTTTGAGGCCGGTCTTGAATCATCGGAACATAAAGAGGTCAAGAGGCATGAGAGTGAGCCAGACATGGAGGTAAATGAAGCATTTGAGACACCTAGGTCGGGAGAAGTTCAAGACCCTGATAACAAGATAGAGGCATTGGTGGAAGAGCTGAGAATCACAAAAGATAGGCTTCAGCATTCACAGAAAGAGATTGCAAGTTTGAGACAAGAACTTGAGAGTAATAAAGCCTCAAGATTGAATCATGAACAGGATAGTAATAAAGCCTCTGAGAAAATTCATCTGTTGCAGGGTCAGCTTGAATCTGCTAAGAAGGACATTGCTACGTGGAAAACAAAGCTTAACTCAGAGAAAAGAGAGGTTTCGAAGCTGCAGGAACGAATCGCAAGGTTAAAAACTAGTTTATCAGACAGGGATCATGAGGTCATGGATTTGAAAATAGCGGTATCTGATGCTGAGGAGAAGATATTCCCAGAGAAGGCACAGGTAAAGGCCGAAATATCTAGACTGTATTCGGAACGGACGCAACTGGAGGAGCAGATTAGAGACTGGGAGTCTCGAGGACGCTCTTTGGAGGATGAAATCAGAATGATTAAGGCTGGGAAAGCAGAAATGGAGGAGAGACTTACTAGCGAAATTGAGCAGTTAAAGGCGGAAATCTTTGAGATAGGCAATCACATCGGCAACTTACATAAGGCCCTTGATGCTATGAAAGCAGAAGGAGATGAGCTTAGCACAAAAGTTGTAACACTTAAAGCAGAAGTTAGTTATAGAGATGATAAGATAAATGAGATGGACATTCAGCTGCAGCAGTTGCACAAGGAGCAAGTGGAACTGGTTTCCGGGGCCGAAGGGGCATGGAAATTGGTGGAGGAGCTAACAGCAAGAACAAAAGAACTCGAAGAGGAGATTCAGAGGCAAAGAGTCATGATTTTAGAAGGAGCAGAAGAAAAGAGAGAAGCTATAAGGCAGTTGTGCTTCTCACTTGAACATTATAGGAACGGTTATCACAGGCTTCGACAGGCTTGCATGGGACACAAGAGAGTTCCGGTTTTGGCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

638

Amino Acids

73.34

Weight (kDa)

5.28

Isoelectric Point (pI)

64.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIP1	PF07765	22 - 95	4.1e-37	KIP1-like protein
CCDC39	PF24161	329 - 591	5e-07	Coiled-coil domain-containing protein 39

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10690
malus_domestica	MD04G1165400.v1.1 MD12G1179500.v1.1
prunus_persica	Prupe.6G284400_v2.0.a1 Prupe.6G284400_v2.0.a1
pyrus_communis	pycom04g14750 pycom12g16930
rosa_chinensis	RchiOBHm_Chr3g0461691 RchiOBHm_Chr6g0312551
rosa_laevigata	RLG00000010317 RLG00000024905
rosa_multiflora	Rmu_co8045116.1_g000001 Rmu_co8349119.1_g000001 Rmu_sc0003094.1_g000012 Rmu_sc0008363.1_g000007 Rmu_sc0038320.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048580 Rroxscaffold_2G00101990 Rroxscaffold_4G00310750 Rroxscaffold_6G00418040
rosa_rugosa	Rorug05G0531400 Rorug05G0531400 Rorug06G0396500
rosa_samantha	Rh3AG111200 Rh3BG114200 Rh3CG116400 Rh3DG116100 Rh4DG219100 Rh6AG513900 Rh6AG514000 Rh6BG525800 Rh6BG525900 Rh6CG530900 Rh6CG531000 Rh6DG516200 Rh6DG516300
rosa_wichuraiana	Rw3G009410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	949
AciI	CCGC	3 cut(s)	148, 1295, 1505
AclI	AACGTT	1 cut(s)	277
AclWI	GGATC	1 cut(s)	1275
AcsI	RAATTY	2 cut(s)	722, 1128
AcuI	CTGAAG	3 cut(s)	176, 540, 1010
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	4 cut(s)	72, 695, 953, 1330
AgeI	ACCGGT	1 cut(s)	261
AhdI	GACNNNNNGTC	1 cut(s)	1405
AhlI	ACTAGT	1 cut(s)	1250
AjnI	CCWGG	2 cut(s)	65, 803
Alw21I	GWGCWC	2 cut(s)	341, 822
Alw26I	GTCTC	7 cut(s)	63, 270, 935, 1051, 1392, 1413, 1468
AlwI	GGATC	1 cut(s)	1275
AlwNI	CAGNNNCTG	3 cut(s)	409, 527, 539
Ama87I	CYCGRG	2 cut(s)	122, 1410
AoxI	GGCC	8 cut(s)	218, 427, 460, 783, 861, 1344, 1548, 1698
ApeKI	GCWGC	6 cut(s)	437, 604, 664, 1222, 1657, 1660
ApoI	RAATTY	2 cut(s)	722, 1128
AsiGI	ACCGGT	1 cut(s)	261
Asp700I	GAANNNNTTC	1 cut(s)	1319
AspA2I	CCTAGG	1 cut(s)	947
AspS9I	GGNCC	5 cut(s)	381, 428, 461, 1549, 1698
AsuC2I	CCSGG	1 cut(s)	1696
AsuHPI	GGTGA	1 cut(s)	605
AsuII	TTCGAA	1 cut(s)	1217
AvaI	CYCGRG	2 cut(s)	122, 1410
AvaII	GGWCC	1 cut(s)	381
AvrII	CCTAGG	1 cut(s)	947
BanII	GRGCYC	2 cut(s)	341, 822
BauI	CACGAG	1 cut(s)	432
Bbv12I	GWGCWC	2 cut(s)	341, 822
BbvCI	CCTCAGC	1 cut(s)	1308
BbvI	GCAGC	6 cut(s)	424, 616, 651, 1209, 1644, 1672
BccI	CCATC	4 cut(s)	124, 167, 379, 1639
BcgI	CGANNNNNNTGC	4 cut(s)	1513, 1547, 1860, 1894
BciT130I	CCWGG	2 cut(s)	67, 805
BclI	TGATCA	2 cut(s)	283, 595
BcnI	CCSGG	1 cut(s)	1696
BcoDI	GTCTC	7 cut(s)	63, 270, 935, 1051, 1392, 1413, 1468
BcuI	ACTAGT	1 cut(s)	1250
BfaI	CTAG	5 cut(s)	269, 948, 1251, 1356, 1482
BfmI	CTRYAG	3 cut(s)	665, 1223, 1658
BglI	GCCNNNNNGGC	2 cut(s)	860, 1706
BglII	AGATCT	1 cut(s)	322
BisI	GCNGC	6 cut(s)	438, 605, 665, 1223, 1658, 1661
BlnI	CCTAGG	1 cut(s)	947
BlpI	GCTNAGC	1 cut(s)	1583
BlsI	GCNGC	6 cut(s)	439, 606, 666, 1224, 1659, 1662
Bme1390I	CCNGG	3 cut(s)	67, 805, 1696
Bme18I	GGWCC	1 cut(s)	381
BmeRI	GACNNNNNGTC	1 cut(s)	1405
BmeT110I	CYCGRG	2 cut(s)	122, 1410
BmgT120I	GGNCC	5 cut(s)	381, 428, 461, 1549, 1698
BmiI	GGNNCC	2 cut(s)	463, 1699
BmrFI	CCNGG	3 cut(s)	67, 805, 1696
BmrI	ACTGGG	2 cut(s)	459, 1411
BmsI	GCATC	4 cut(s)	141, 150, 1294, 1546
BmuI	ACTGGG	2 cut(s)	459, 1411
BpmI	CTGGAG	1 cut(s)	1403
Bpu10I	CCTNAGC	2 cut(s)	302, 1308
Bpu1102I	GCTNAGC	1 cut(s)	1583
Bpu14I	TTCGAA	1 cut(s)	1217
BpuEI	CTTGAG	3 cut(s)	735, 1069, 1088
BpuMI	CCSGG	1 cut(s)	1696
BsaAI	YACGTR	1 cut(s)	1179
BsaBI	GATNNNNATC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	270
BsaJI	CCNNGG	5 cut(s)	12, 457, 717, 947, 1695
BsaWI	WCCGGW	2 cut(s)	261, 1900
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 695, 953, 1330
Bse118I	RCCGGY	2 cut(s)	261, 863
Bse1I	ACTGG	4 cut(s)	465, 1386, 1406, 1692
Bse3DI	GCAATG	2 cut(s)	856, 1170
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	2 cut(s)	67, 805
BseDI	CCNNGG	5 cut(s)	12, 457, 717, 947, 1695
BseGI	GGATG	2 cut(s)	156, 1435
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	4 cut(s)	72, 695, 953, 1330
BseMI	GCAATG	2 cut(s)	856, 1170
BseMII	CTCAG	9 cut(s)	333, 401, 416, 519, 801, 995, 1113, 1212, 1299
BseNI	ACTGG	4 cut(s)	465, 1386, 1406, 1692
BseRI	GAGGAG	6 cut(s)	140, 1325, 1400, 1484, 1739, 1772
BseXI	GCAGC	6 cut(s)	424, 616, 651, 1209, 1644, 1672
BseYI	CCCAGC	1 cut(s)	1451
BshFI	GGCC	8 cut(s)	220, 429, 462, 785, 863, 1346, 1550, 1700
BshTI	ACCGGT	1 cut(s)	261
BsiHKAI	GWGCWC	2 cut(s)	341, 822
BsiHKCI	CYCGRG	2 cut(s)	122, 1410
BsiSI	CCGG	4 cut(s)	262, 864, 1695, 1901
BslFI	GGGAC	3 cut(s)	75, 89, 1899
BslI	CCNNNNNNNGG	4 cut(s)	72, 695, 953, 1330
BsmAI	GTCTC	7 cut(s)	63, 270, 935, 1051, 1392, 1413, 1468
BsmFI	GGGAC	3 cut(s)	75, 89, 1899
BsmI	GAATGC	2 cut(s)	682, 1030
BsnI	GGCC	8 cut(s)	220, 429, 462, 785, 863, 1346, 1550, 1700
Bso31I	GGTCTC	1 cut(s)	270
BsoBI	CYCGRG	2 cut(s)	122, 1410
Bsp119I	TTCGAA	1 cut(s)	1217
Bsp1286I	GDGCHC	2 cut(s)	341, 822
Bsp143I	GATC	5 cut(s)	283, 322, 391, 595, 1267
Bsp1720I	GCTNAGC	1 cut(s)	1583
BspACI	CCGC	3 cut(s)	148, 1295, 1505
BspANI	GGCC	8 cut(s)	220, 429, 462, 785, 863, 1346, 1550, 1700
BspCNI	CTCAG	9 cut(s)	332, 402, 415, 520, 800, 996, 1114, 1211, 1300
BspHI	TCATGA	3 cut(s)	1096, 1270, 1779
BspLI	GGNNCC	2 cut(s)	463, 1699
BspMAI	CTGCAG	3 cut(s)	669, 1227, 1662
BspPI	GGATC	1 cut(s)	1275
BspQI	GCTCTTC	1 cut(s)	993
BspT104I	TTCGAA	1 cut(s)	1217
BspTNI	GGTCTC	1 cut(s)	270
BsrDI	GCAATG	2 cut(s)	856, 1170
BsrFI	RCCGGY	2 cut(s)	261, 863
BsrI	ACTGG	4 cut(s)	465, 1386, 1406, 1692
BssAI	RCCGGY	2 cut(s)	261, 863
BssECI	CCNNGG	5 cut(s)	12, 457, 717, 947, 1695
BssMI	GATC	5 cut(s)	283, 322, 391, 595, 1267
BssSI	CACGAG	1 cut(s)	432
BssT1I	CCWWGG	3 cut(s)	12, 457, 947
Bst2BI	CACGAG	1 cut(s)	432
Bst2UI	CCWGG	2 cut(s)	67, 805
Bst4CI	ACNGT	4 cut(s)	80, 356, 1362, 1856
Bst6I	CTCTTC	3 cut(s)	666, 993, 1749
BstAPI	GCANNNNNTGC	3 cut(s)	737, 746, 1666
BstBAI	YACGTR	1 cut(s)	1179
BstBI	TTCGAA	1 cut(s)	1217
BstC8I	GCNNGC	3 cut(s)	111, 442, 1879
BstF5I	GGATG	2 cut(s)	156, 1435
BstKTI	GATC	5 cut(s)	286, 325, 394, 598, 1270
BstMAI	GTCTC	7 cut(s)	63, 270, 935, 1051, 1392, 1413, 1468
BstMBI	GATC	5 cut(s)	283, 322, 391, 595, 1267
BstNI	CCWGG	2 cut(s)	67, 805
BstSCI	CCNGG	3 cut(s)	65, 803, 1694
BstSFI	CTRYAG	3 cut(s)	665, 1223, 1658
BstV1I	GCAGC	6 cut(s)	424, 616, 651, 1209, 1644, 1672
BstX2I	RGATCY	1 cut(s)	322
BstXI	CCANNNNNNTGG	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	8 cut(s)	220, 429, 462, 785, 863, 1346, 1550, 1700
BtsCI	GGATG	2 cut(s)	156, 1435
BtsIMutI	CAGTG	1 cut(s)	472
Cac8I	GCNNGC	3 cut(s)	111, 442, 1879
CaiI	CAGNNNCTG	3 cut(s)	409, 527, 539
CciI	TCATGA	3 cut(s)	1096, 1270, 1779
Cfr10I	RCCGGY	2 cut(s)	261, 863
Cfr13I	GGNCC	5 cut(s)	381, 428, 461, 1549, 1698
CseI	GACGC	2 cut(s)	1384, 1425
Csp6I	GTAC	1 cut(s)	259
CspAI	ACCGGT	1 cut(s)	261
CviQI	GTAC	1 cut(s)	259
DpnI	GATC	5 cut(s)	285, 324, 393, 597, 1269
DpnII	GATC	5 cut(s)	283, 322, 391, 595, 1267
DrdI	GACNNNNNNGTC	1 cut(s)	949
DriI	GACNNNNNGTC	1 cut(s)	1405
DseDI	GACNNNNNNGTC	1 cut(s)	949
Eam1104I	CTCTTC	3 cut(s)	666, 993, 1749
Eam1105I	GACNNNNNGTC	1 cut(s)	1405
EarI	CTCTTC	3 cut(s)	666, 993, 1749
EciI	GGCGGA	1 cut(s)	1520
Ecl136II	GAGCTC	2 cut(s)	339, 820
Eco130I	CCWWGG	3 cut(s)	12, 457, 947
Eco147I	AGGCCT	2 cut(s)	220, 785
Eco24I	GRGCYC	2 cut(s)	341, 822
Eco31I	GGTCTC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	381
Eco53kI	GAGCTC	2 cut(s)	339, 820
Eco57I	CTGAAG	3 cut(s)	176, 540, 1010
Eco88I	CYCGRG	2 cut(s)	122, 1410
EcoICRI	GAGCTC	2 cut(s)	339, 820
EcoO109I	RGGNCCY	1 cut(s)	1549
EcoRII	CCWGG	2 cut(s)	65, 803
EcoT14I	CCWWGG	3 cut(s)	12, 457, 947
EcoT22I	ATGCAT	1 cut(s)	347
EcoT38I	GRGCYC	2 cut(s)	341, 822
ErhI	CCWWGG	3 cut(s)	12, 457, 947
FalI	AAGNNNNNCTT	2 cut(s)	1008, 1040
FaqI	GGGAC	3 cut(s)	75, 89, 1899
FbaI	TGATCA	2 cut(s)	283, 595
Fnu4HI	GCNGC	6 cut(s)	438, 605, 665, 1223, 1658, 1661
FokI	GGATG	2 cut(s)	163, 1442
FriOI	GRGCYC	2 cut(s)	341, 822
Fsp4HI	GCNGC	6 cut(s)	438, 605, 665, 1223, 1658, 1661
FspBI	CTAG	5 cut(s)	269, 948, 1251, 1356, 1482
GluI	GCNGC	6 cut(s)	438, 605, 665, 1223, 1658, 1661
GsaI	CCCAGC	1 cut(s)	1455
GsuI	CTGGAG	1 cut(s)	1403
HaeIII	GGCC	8 cut(s)	220, 429, 462, 785, 863, 1346, 1550, 1700
HapII	CCGG	4 cut(s)	262, 864, 1695, 1901
HgaI	GACGC	2 cut(s)	1384, 1425
HincII	GTYRAC	2 cut(s)	519, 562
HindII	GTYRAC	2 cut(s)	519, 562
HindIII	AAGCTT	2 cut(s)	656, 1190
HpaI	GTTAAC	1 cut(s)	519
HpaII	CCGG	4 cut(s)	262, 864, 1695, 1901
HphI	GGTGA	1 cut(s)	605
Hpy166II	GTNNAC	2 cut(s)	519, 562
Hpy8I	GTNNAC	2 cut(s)	519, 562
Hpy99I	CGWCG	1 cut(s)	420
HpyAV	CCTTC	6 cut(s)	491, 1159, 1324, 1565, 1697, 1784
HpyCH4III	ACNGT	4 cut(s)	80, 356, 1362, 1856
HpyCH4IV	ACGT	2 cut(s)	277, 1178
HpySE526I	ACGT	2 cut(s)	277, 1178
Ksp22I	TGATCA	2 cut(s)	283, 595
KspAI	GTTAAC	1 cut(s)	519
Kzo9I	GATC	5 cut(s)	283, 322, 391, 595, 1267
LguI	GCTCTTC	1 cut(s)	993
LmnI	GCTCC	4 cut(s)	1387, 1675, 1726, 1793
Lsp1109I	GCAGC	6 cut(s)	424, 616, 651, 1209, 1644, 1672
LweI	GCATC	4 cut(s)	141, 150, 1294, 1546
MaeI	CTAG	5 cut(s)	269, 948, 1251, 1356, 1482
MaeII	ACGT	2 cut(s)	277, 1178
MaeIII	GTNAC	4 cut(s)	80, 289, 313, 1597
MalI	GATC	5 cut(s)	285, 324, 393, 597, 1269
MboI	GATC	5 cut(s)	283, 322, 391, 595, 1267
MfeI	CAATTG	1 cut(s)	623
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	2 cut(s)	341, 822
MlyI	GAGTC	3 cut(s)	421, 1415, 1785
MmeI	TCCRAC	1 cut(s)	24
Mph1103I	ATGCAT	1 cut(s)	347
MroXI	GAANNNNTTC	1 cut(s)	1319
MseI	TTAA	7 cut(s)	518, 1194, 1244, 1446, 1499, 1605, 1915
MslI	CAYNNNNRTG	2 cut(s)	376, 906
MspA1I	CMGCKG	1 cut(s)	1657
MspI	CCGG	4 cut(s)	262, 864, 1695, 1901
MspR9I	CCNGG	3 cut(s)	67, 805, 1696
MunI	CAATTG	1 cut(s)	623
Mva1269I	GAATGC	2 cut(s)	682, 1030
MvaI	CCWGG	2 cut(s)	67, 805
NciI	CCSGG	1 cut(s)	1696
NdeII	GATC	5 cut(s)	283, 322, 391, 595, 1267
NlaIV	GGNNCC	2 cut(s)	463, 1699
NmuCI	GTSAC	3 cut(s)	80, 289, 313
NsiI	ATGCAT	1 cut(s)	347
NspV	TTCGAA	1 cut(s)	1217
PaeR7I	CTCGAG	2 cut(s)	122, 1410
PagI	TCATGA	3 cut(s)	1096, 1270, 1779
PceI	AGGCCT	2 cut(s)	220, 785
PciSI	GCTCTTC	1 cut(s)	993
PctI	GAATGC	2 cut(s)	682, 1030
PdmI	GAANNNNTTC	1 cut(s)	1319
PinAI	ACCGGT	1 cut(s)	261
PkrI	GCNGC	6 cut(s)	439, 606, 666, 1224, 1659, 1662
PleI	GAGTC	3 cut(s)	420, 1414, 1784
PpsI	GAGTC	3 cut(s)	420, 1414, 1784
Ppu21I	YACGTR	1 cut(s)	1179
Psp124BI	GAGCTC	2 cut(s)	341, 822
Psp1406I	AACGTT	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	65, 803
PspFI	CCCAGC	1 cut(s)	1451
PspGI	CCWGG	2 cut(s)	65, 803
PspN4I	GGNNCC	2 cut(s)	463, 1699
PspPI	GGNCC	5 cut(s)	381, 428, 461, 1549, 1698
PstI	CTGCAG	3 cut(s)	669, 1227, 1662
PstNI	CAGNNNCTG	3 cut(s)	409, 527, 539
PsuI	RGATCY	1 cut(s)	322
PvuII	CAGCTG	1 cut(s)	1657
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	2 cut(s)	376, 906
SacI	GAGCTC	2 cut(s)	341, 822
SapI	GCTCTTC	1 cut(s)	993
SaqAI	TTAA	7 cut(s)	518, 1194, 1244, 1446, 1499, 1605, 1915
SatI	GCNGC	6 cut(s)	438, 605, 665, 1223, 1658, 1661
Sau3AI	GATC	5 cut(s)	283, 322, 391, 595, 1267
Sau96I	GGNCC	5 cut(s)	381, 428, 461, 1549, 1698
SchI	GAGTC	3 cut(s)	421, 1415, 1785
ScrFI	CCNGG	3 cut(s)	67, 805, 1696
SduI	GDGCHC	2 cut(s)	341, 822
SfaNI	GCATC	4 cut(s)	141, 150, 1294, 1546
SfcI	CTRYAG	3 cut(s)	665, 1223, 1658
Sfr274I	CTCGAG	2 cut(s)	122, 1410
SfuI	TTCGAA	1 cut(s)	1217
SinI	GGWCC	1 cut(s)	381
SlaI	CTCGAG	2 cut(s)	122, 1410
SmiMI	CAYNNNNRTG	2 cut(s)	376, 906
SmlI	CTYRAG	5 cut(s)	122, 750, 1067, 1084, 1410
SmoI	CTYRAG	5 cut(s)	122, 750, 1067, 1084, 1410
SpeI	ACTAGT	1 cut(s)	1250
SseBI	AGGCCT	2 cut(s)	220, 785
SsiI	CCGC	3 cut(s)	148, 1295, 1505
SspMI	CTAG	5 cut(s)	269, 948, 1251, 1356, 1482
SstI	GAGCTC	2 cut(s)	341, 822
StuI	AGGCCT	2 cut(s)	220, 785
StyD4I	CCNGG	3 cut(s)	65, 803, 1694
StyI	CCWWGG	3 cut(s)	12, 457, 947
TaaI	ACNGT	4 cut(s)	80, 356, 1362, 1856
TaiI	ACGT	2 cut(s)	280, 1181
TaqI	TCGA	7 cut(s)	23, 123, 633, 1217, 1411, 1752, 1870
Tru1I	TTAA	7 cut(s)	518, 1194, 1244, 1446, 1499, 1605, 1915
Tru9I	TTAA	7 cut(s)	518, 1194, 1244, 1446, 1499, 1605, 1915
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	3 cut(s)	80, 289, 313
TseI	GCWGC	6 cut(s)	437, 604, 664, 1222, 1657, 1660
Tsp45I	GTSAC	3 cut(s)	80, 289, 313
TspDTI	ATGAA	8 cut(s)	50, 171, 786, 945, 1113, 1121, 1446, 1577
TspGWI	ACGGA	1 cut(s)	1387
TspRI	CASTG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	381
XapI	RAATTY	2 cut(s)	722, 1128
XbaI	TCTAGA	1 cut(s)	1355
XhoI	CTCGAG	2 cut(s)	122, 1410
XmaJI	CCTAGG	1 cut(s)	947
XmnI	GAANNNNTTC	1 cut(s)	1319
XspI	CTAG	5 cut(s)	269, 948, 1251, 1356, 1482
Zsp2I	ATGCAT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.