Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003276

Physical Location & Seq

Genomic Coordinates Reverse (-)

26423592 .. 26426110

Gene Structure 2519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G284400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGACGTCTGAGGCTTCTGACGGGGATAAAAAATTGCCCAAGAGACGTAATGGTTGTGATTCAATTGAGGACACTCTGGCTAAATGGAAGAATTACAATGACAGATTTGATTTTGCAAAAGATGGAGTGAAAAAGAAGCGGAAGGCCCCATCTAAGGGGTCCAAAAAGGGATGTATGAAAGGGAAAGGAGGGCCTGAGAACTCAGATTGTGTTTATAGAGGTGTTAGGCAGAGGACTTGGGGCAAGTGGGTAGCTGAAATTCGAGAACCAAATAATTTTAGTGGTGTGTCAAAGAAGAACAGTCGTCTTTGGCTTGGTACTTTCCCTACAGCCTATGATGCTGCTTTTGCTTATGATGAAGCTGCAAGGGCCATGTATGGTGGTTTGGCCAGGCTCAACTTTCCACAAAACACTATGAAATTGAAGGAGTATTCTAATTCTGTGTATTCTGGAACAACTAAAACAACAACATCATCATCATATGAGTCTTCAACAACATATAATAATGGGGATGAGGCAGAGGGATTGGACATGAGCAGCAAGTGTGCTATGGAAAGCTCTCGATTTGTGGTAGGCAAATCAAAGGAAAGTTATGACTTCTTTGAGGATTGTGTGCATAAAGAGCCGAAGCAAGAAACTGATTGTTCTGTGGGTTTTGCGTCACAGGATTTAGAGGTGTTAGATGCTACTCTAAGAGAAGCTAAAGATGTGAAATGTGAATTGGAAACTGAGTATGAGCTTGCCAGAAATGATGCTGAAGAAACTAGTGTTTTTCAAACCGGGAGTTATGAAAGCTTCAACCATAGGCCTGATTACTTGCATAATGAGCTACAGGTTGTGAATCTTGATTCAGTACCTGATGGGAAGCCTTATTATAATGATTGGGAATCTTTGGAGACTTTTTTGAGGTCCAACAACGATTACTTAAATAATGAGCTTGTAGATGCGGAATGCAATGGAAGAAATGATTGCAACCCTTCAGAGGATGTTAATGTTGAGAAACCTGTAACGAGCGAAGCCATGGAGAAAGAATTTCCCATGATTCTGGAATCCGGAAGTCACAATGGCCTAGATGATAGCTGCCACTATATGCATAATGAGCAGACAAATGTGGCCAGCAATCTGGTAACAGCCGATTTTGAGCCATCTAACGATGAAATTAAGAGATCAATGACGGATCAAGAATTGCGGGGAGGTCTTGTAGAAACTACGAACTTAAATGGCCATAATGGCTTCATAGATAGTTATGCTTGCTTAGATGACATTAGGCCTTCAAATGATATAAAAATGCAGGAGAACAGACTTGCCAACTTGCATAATTGGTCTGTAGAAGAATCATATGGCATTGATGCTCAGAACCAACAAGGGGAAAGGCTGCCTAATCTCCCTAACCAATCACAGACACAACCACAGGGTAACATACCAGGAAGGTTGGCTCATACGGAGGAAGCAAGTTTAGACATCGATTTCGATGTAGATTTGTTCAGGCAAAATTATGATTCAGGTGTATTAGAAGAGCAGGTGTTTCATGGTTCATGGTTCCCTTACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

518

Amino Acids

58.37

Weight (kDa)

4.74

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10690
malus_domestica	MD04G1165400.v1.1 MD12G1179500.v1.1
prunus_persica	Prupe.6G284400_v2.0.a1 Prupe.6G284400_v2.0.a1
pyrus_communis	pycom04g14750 pycom12g16930
rosa_chinensis	RchiOBHm_Chr3g0461691 RchiOBHm_Chr6g0312551
rosa_laevigata	RLG00000010317 RLG00000024905
rosa_multiflora	Rmu_co8045116.1_g000001 Rmu_co8349119.1_g000001 Rmu_sc0003094.1_g000012 Rmu_sc0008363.1_g000007 Rmu_sc0038320.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048580 Rroxscaffold_2G00101990 Rroxscaffold_4G00310750 Rroxscaffold_6G00418040
rosa_rugosa	Rorug05G0531400 Rorug05G0531400 Rorug06G0396500
rosa_samantha	Rh3AG111200 Rh3BG114200 Rh3CG116400 Rh3DG116100 Rh4DG219100 Rh6AG513900 Rh6AG514000 Rh6BG525800 Rh6BG525900 Rh6CG530900 Rh6CG531000 Rh6DG516200 Rh6DG516300
rosa_wichuraiana	Rw3G009410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	876
AarI	CACCTGC	1 cut(s)	1510
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	1510
AccIII	TCCGGA	1 cut(s)	1052
AciI	CCGC	3 cut(s)	139, 947, 1189
AclWI	GGATC	1 cut(s)	1185
AcoI	YGGCCR	3 cut(s)	387, 1113, 1222
AcsI	RAATTY	2 cut(s)	258, 1031
AcuI	CTGAAG	2 cut(s)	777, 963
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	319, 855
AfiI	CCNNNNNNNGG	4 cut(s)	154, 155, 982, 1366
AgsI	TTSAA	6 cut(s)	63, 424, 492, 776, 799, 1275
AhlI	ACTAGT	1 cut(s)	764
AjnI	CCWGG	2 cut(s)	389, 1423
AjuI	GAANNNNNNNTTGG	2 cut(s)	704, 736
AluBI	AGCT	9 cut(s)	254, 362, 558, 701, 739, 795, 829, 937, 1080
AluI	AGCT	9 cut(s)	254, 362, 558, 701, 739, 795, 829, 937, 1080
Alw26I	GTCTC	2 cut(s)	37, 890
AlwI	GGATC	1 cut(s)	1185
AlwNI	CAGNNNCTG	1 cut(s)	857
Aor13HI	TCCGGA	1 cut(s)	1052
AoxI	GGCC	9 cut(s)	144, 191, 369, 387, 806, 1066, 1113, 1222, 1268
ApeKI	GCWGC	5 cut(s)	341, 362, 537, 1080, 1375
ApoI	RAATTY	2 cut(s)	258, 1031
ArsI	GACNNNNNNTTYG	2 cut(s)	1451, 1483
AspS9I	GGNCC	5 cut(s)	145, 159, 191, 369, 909
AsuC2I	CCSGG	1 cut(s)	781
AvaII	GGWCC	2 cut(s)	159, 909
BalI	TGGCCA	3 cut(s)	389, 1115, 1224
BbsI	GAAGAC	1 cut(s)	480
BbvI	GCAGC	5 cut(s)	328, 349, 549, 1067, 1362
BccI	CCATC	4 cut(s)	116, 157, 854, 1153
BciT130I	CCWGG	2 cut(s)	391, 1425
BcnI	CCSGG	1 cut(s)	781
BcoDI	GTCTC	2 cut(s)	37, 890
BcuI	ACTAGT	1 cut(s)	764
BfaI	CTAG	2 cut(s)	765, 1070
BfmI	CTRYAG	3 cut(s)	327, 830, 1326
BfuAI	ACCTGC	1 cut(s)	1510
BglI	GCCNNNNNGGC	1 cut(s)	1230
BisI	GCNGC	5 cut(s)	342, 363, 538, 1081, 1376
BlsI	GCNGC	5 cut(s)	343, 364, 539, 1082, 1377
Bme1390I	CCNGG	3 cut(s)	391, 781, 1425
Bme18I	GGWCC	2 cut(s)	159, 909
BmgT120I	GGNCC	5 cut(s)	145, 159, 191, 369, 909
BmiI	GGNNCC	3 cut(s)	147, 160, 1541
BmrFI	CCNGG	3 cut(s)	391, 781, 1425
BmsI	GCATC	5 cut(s)	328, 673, 742, 934, 1339
BpiI	GAAGAC	1 cut(s)	480
BpuMI	CCSGG	1 cut(s)	781
Bsa29I	ATCGAT	1 cut(s)	1464
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	1020
BsaWI	WCCGGW	1 cut(s)	1052
BsaXI	ACNNNNNCTCC	2 cut(s)	1185, 1215
Bsc4I	CCNNNNNNNGG	4 cut(s)	154, 155, 982, 1366
Bse3DI	GCAATG	1 cut(s)	961
BseAI	TCCGGA	1 cut(s)	1052
BseBI	CCWGG	2 cut(s)	391, 1425
BseCI	ATCGAT	1 cut(s)	1464
BseDI	CCNNGG	1 cut(s)	1020
BseGI	GGATG	3 cut(s)	176, 517, 991
BseLI	CCNNNNNNNGG	4 cut(s)	154, 155, 982, 1366
BseMI	GCAATG	1 cut(s)	961
BseMII	CTCAG	4 cut(s)	186, 216, 720, 1367
BseXI	GCAGC	5 cut(s)	328, 349, 549, 1067, 1362
BshFI	GGCC	9 cut(s)	146, 193, 371, 389, 808, 1068, 1115, 1224, 1270
BshVI	ATCGAT	1 cut(s)	1464
BsiSI	CCGG	2 cut(s)	780, 1053
BslI	CCNNNNNNNGG	4 cut(s)	154, 155, 982, 1366
BsmAI	GTCTC	2 cut(s)	37, 890
BsmBI	CGTCTC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	956
BsnI	GGCC	9 cut(s)	146, 193, 371, 389, 808, 1068, 1115, 1224, 1270
Bsp13I	TCCGGA	1 cut(s)	1052
Bsp143I	GATC	2 cut(s)	1166, 1177
Bsp19I	CCATGG	1 cut(s)	1020
BspACI	CCGC	3 cut(s)	139, 947, 1189
BspANI	GGCC	9 cut(s)	146, 193, 371, 389, 808, 1068, 1115, 1224, 1270
BspCNI	CTCAG	4 cut(s)	187, 215, 721, 1366
BspDI	ATCGAT	1 cut(s)	1464
BspEI	TCCGGA	1 cut(s)	1052
BspLI	GGNNCC	3 cut(s)	147, 160, 1541
BspMI	ACCTGC	1 cut(s)	1510
BspPI	GGATC	1 cut(s)	1185
BspQI	GCTCTTC	1 cut(s)	1509
BsrDI	GCAATG	1 cut(s)	961
BssECI	CCNNGG	1 cut(s)	1020
BssMI	GATC	2 cut(s)	1166, 1177
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	1020
Bst2UI	CCWGG	2 cut(s)	391, 1425
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	1 cut(s)	1509
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	3 cut(s)	741, 1117, 1252
BstDEI	CTNAG	9 cut(s)	9, 153, 195, 202, 692, 729, 1255, 1353, 1551
BstDSI	CCRYGG	1 cut(s)	1020
BstF5I	GGATG	3 cut(s)	176, 517, 991
BstKTI	GATC	2 cut(s)	1169, 1180
BstMAI	GTCTC	2 cut(s)	37, 890
BstMBI	GATC	2 cut(s)	1166, 1177
BstMWI	GCNNNNNNNGC	7 cut(s)	338, 347, 368, 622, 826, 1099, 1230
BstNI	CCWGG	2 cut(s)	391, 1425
BstSCI	CCNGG	3 cut(s)	389, 779, 1423
BstSFI	CTRYAG	3 cut(s)	327, 830, 1326
BstV1I	GCAGC	5 cut(s)	328, 349, 549, 1067, 1362
BstV2I	GAAGAC	1 cut(s)	480
BstXI	CCANNNNNNTGG	2 cut(s)	1045, 1123
Bsu15I	ATCGAT	1 cut(s)	1464
BsuRI	GGCC	9 cut(s)	146, 193, 371, 389, 808, 1068, 1115, 1224, 1270
BsuTUI	ATCGAT	1 cut(s)	1464
BtgI	CCRYGG	1 cut(s)	1020
BtsCI	GGATG	3 cut(s)	176, 517, 991
BveI	ACCTGC	1 cut(s)	1510
Cac8I	GCNNGC	3 cut(s)	741, 1117, 1252
CaiI	CAGNNNCTG	1 cut(s)	857
Cfr13I	GGNCC	5 cut(s)	145, 159, 191, 369, 909
ClaI	ATCGAT	1 cut(s)	1464
CseI	GACGC	1 cut(s)	648
Csp6I	GTAC	2 cut(s)	318, 854
CviAII	CATG	6 cut(s)	373, 532, 1021, 1039, 1529, 1536
CviQI	GTAC	2 cut(s)	318, 854
DdeI	CTNAG	9 cut(s)	9, 153, 195, 202, 692, 729, 1255, 1353, 1551
DpnI	GATC	2 cut(s)	1168, 1179
DpnII	GATC	2 cut(s)	1166, 1177
EaeI	YGGCCR	3 cut(s)	387, 1113, 1222
Eam1104I	CTCTTC	1 cut(s)	1509
EarI	CTCTTC	1 cut(s)	1509
Eco130I	CCWWGG	1 cut(s)	1020
Eco147I	AGGCCT	2 cut(s)	808, 1270
Eco47I	GGWCC	2 cut(s)	159, 909
Eco57I	CTGAAG	2 cut(s)	777, 963
EcoO109I	RGGNCCY	2 cut(s)	145, 191
EcoRII	CCWGG	2 cut(s)	389, 1423
EcoT14I	CCWWGG	1 cut(s)	1020
EcoT22I	ATGCAT	1 cut(s)	1095
ErhI	CCWWGG	1 cut(s)	1020
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	6 cut(s)	376, 535, 1024, 1042, 1532, 1539
FatI	CATG	6 cut(s)	372, 531, 1020, 1038, 1528, 1535
FauI	CCCGC	1 cut(s)	1182
FauNDI	CATATG	2 cut(s)	481, 1339
Fnu4HI	GCNGC	5 cut(s)	342, 363, 538, 1081, 1376
FokI	GGATG	3 cut(s)	183, 524, 998
Fsp4HI	GCNGC	5 cut(s)	342, 363, 538, 1081, 1376
FspBI	CTAG	2 cut(s)	765, 1070
GluI	GCNGC	5 cut(s)	342, 363, 538, 1081, 1376
HaeIII	GGCC	9 cut(s)	146, 193, 371, 389, 808, 1068, 1115, 1224, 1270
HapII	CCGG	2 cut(s)	780, 1053
HgaI	GACGC	1 cut(s)	648
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	376, 535, 1024, 1042, 1532, 1539
HindIII	AAGCTT	1 cut(s)	793
HinfI	GANTC	9 cut(s)	59, 485, 841, 848, 887, 1042, 1049, 1334, 1499
HpaII	CCGG	2 cut(s)	780, 1053
Hpy188I	TCNGA	5 cut(s)	10, 19, 205, 982, 1356
Hpy188III	TCNNGA	7 cut(s)	263, 450, 561, 845, 1046, 1053, 1181
HpyAV	CCTTC	5 cut(s)	136, 418, 987, 1281, 1422
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	2 cut(s)	5, 46
HpyCH4V	TGCA	9 cut(s)	116, 365, 616, 820, 954, 972, 1093, 1291, 1315
HpyF10VI	GCNNNNNNNGC	7 cut(s)	338, 347, 368, 622, 826, 1099, 1230
HpyF3I	CTNAG	9 cut(s)	9, 153, 195, 202, 692, 729, 1255, 1353, 1551
HpySE526I	ACGT	2 cut(s)	5, 46
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	376, 535, 1024, 1042, 1532, 1539
Kpn2I	TCCGGA	1 cut(s)	1052
Kzo9I	GATC	2 cut(s)	1166, 1177
LguI	GCTCTTC	1 cut(s)	1509
Lsp1109I	GCAGC	5 cut(s)	328, 349, 549, 1067, 1362
LweI	GCATC	5 cut(s)	328, 673, 742, 934, 1339
MaeI	CTAG	2 cut(s)	765, 1070
MaeII	ACGT	2 cut(s)	5, 46
MaeIII	GTNAC	5 cut(s)	660, 1006, 1058, 1126, 1415
MalI	GATC	2 cut(s)	1168, 1179
MboI	GATC	2 cut(s)	1166, 1177
MboII	GAAGA	7 cut(s)	100, 307, 480, 770, 972, 1343, 1526
MfeI	CAATTG	1 cut(s)	63
MlsI	TGGCCA	3 cut(s)	389, 1115, 1224
MluNI	TGGCCA	3 cut(s)	389, 1115, 1224
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	936
Mox20I	TGGCCA	3 cut(s)	389, 1115, 1224
Mph1103I	ATGCAT	1 cut(s)	1095
MroI	TCCGGA	1 cut(s)	1052
MscI	TGGCCA	3 cut(s)	389, 1115, 1224
MseI	TTAA	4 cut(s)	926, 990, 1161, 1217
Msp20I	TGGCCA	3 cut(s)	389, 1115, 1224
MspI	CCGG	2 cut(s)	780, 1053
MspR9I	CCNGG	3 cut(s)	391, 781, 1425
MunI	CAATTG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	956
MvaI	CCWGG	2 cut(s)	391, 1425
MwoI	GCNNNNNNNGC	7 cut(s)	338, 347, 368, 622, 826, 1099, 1230
NciI	CCSGG	1 cut(s)	781
NcoI	CCATGG	1 cut(s)	1020
NdeI	CATATG	2 cut(s)	481, 1339
NdeII	GATC	2 cut(s)	1166, 1177
NlaIII	CATG	6 cut(s)	376, 535, 1024, 1042, 1532, 1539
NlaIV	GGNNCC	3 cut(s)	147, 160, 1541
NmuCI	GTSAC	2 cut(s)	660, 1058
NsiI	ATGCAT	1 cut(s)	1095
PaqCI	CACCTGC	1 cut(s)	1510
PceI	AGGCCT	2 cut(s)	808, 1270
PciSI	GCTCTTC	1 cut(s)	1509
PctI	GAATGC	1 cut(s)	956
PfeI	GAWTC	8 cut(s)	59, 841, 848, 887, 1042, 1049, 1334, 1499
PkrI	GCNGC	5 cut(s)	343, 364, 539, 1082, 1377
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
PsiI	TTATAA	1 cut(s)	876
Psp6I	CCWGG	2 cut(s)	389, 1423
PspGI	CCWGG	2 cut(s)	389, 1423
PspN4I	GGNNCC	3 cut(s)	147, 160, 1541
PspPI	GGNCC	5 cut(s)	145, 159, 191, 369, 909
PstNI	CAGNNNCTG	1 cut(s)	857
RsaI	GTAC	2 cut(s)	319, 855
RsaNI	GTAC	2 cut(s)	318, 854
SapI	GCTCTTC	1 cut(s)	1509
SaqAI	TTAA	4 cut(s)	926, 990, 1161, 1217
SatI	GCNGC	5 cut(s)	342, 363, 538, 1081, 1376
Sau3AI	GATC	2 cut(s)	1166, 1177
Sau96I	GGNCC	5 cut(s)	145, 159, 191, 369, 909
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	3 cut(s)	391, 781, 1425
SfaNI	GCATC	5 cut(s)	328, 673, 742, 934, 1339
SfcI	CTRYAG	3 cut(s)	327, 830, 1326
SinI	GGWCC	2 cut(s)	159, 909
SpeI	ACTAGT	1 cut(s)	764
SseBI	AGGCCT	2 cut(s)	808, 1270
SsiI	CCGC	3 cut(s)	139, 947, 1189
SspMI	CTAG	2 cut(s)	765, 1070
StuI	AGGCCT	2 cut(s)	808, 1270
StyD4I	CCNGG	3 cut(s)	389, 779, 1423
StyI	CCWWGG	1 cut(s)	1020
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	2 cut(s)	8, 49
TaqI	TCGA	4 cut(s)	262, 562, 1464, 1470
TfiI	GAWTC	8 cut(s)	59, 841, 848, 887, 1042, 1049, 1334, 1499
Tru1I	TTAA	4 cut(s)	926, 990, 1161, 1217
Tru9I	TTAA	4 cut(s)	926, 990, 1161, 1217
TseFI	GTSAC	2 cut(s)	660, 1058
TseI	GCWGC	5 cut(s)	341, 362, 537, 1080, 1375
Tsp45I	GTSAC	2 cut(s)	660, 1058
TspDTI	ATGAA	8 cut(s)	191, 372, 431, 804, 1170, 1225, 1517, 1524
TspGWI	ACGGA	2 cut(s)	1190, 1457
VpaK11BI	GGWCC	2 cut(s)	159, 909
XapI	RAATTY	2 cut(s)	258, 1031
XspI	CTAG	2 cut(s)	765, 1070
ZraI	GACGTC	1 cut(s)	6
Zsp2I	ATGCAT	1 cut(s)	1095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.