Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003276

Physical Location & Seq

Genomic Coordinates Reverse (-)

68451026 .. 68451463

Gene Structure 438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG531000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGATGCCTGAGAGTTCAGACGGGGATAGACAAATGGGCAAGAGGCCCAGAGTTGATGATACTTTGGTTAAATGGGACAAGTACAATGAAAATTCTGATTTTGCAAAAGATGGATTTGTGAATCAAATGCCAACCACAGGAGCTAGAAAGGGTTGTATGAGAGGAAAAGGGGAGCCTGAGAATTTAAATTCCAGTTATAGAGGTGTTAGCCAGGGGATTTGGGGCAAATGGGTTTCTGAAAGTCGAGTGCCAAGTAGTAATACACATGGTCTGACGTTGAAGAAGGTTGCTCGTTTATGGCTTGGTACTTTTGATACTGCTGTTGAAGTTGCACTTGCTTATGATAAAACTGCAAAGGCCATGTATGGTCCTGTGGCTAGGCTTAACTTCCCCAAGTCTTTGGAAACATCAATCTCGGATGAGACCACAGAATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

145

Amino Acids

16.1

Weight (kDa)

8.66

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	65 - 123	6.2e-09	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10690
malus_domestica	MD04G1165400.v1.1 MD12G1179500.v1.1
prunus_persica	Prupe.6G284400_v2.0.a1 Prupe.6G284400_v2.0.a1
pyrus_communis	pycom04g14750 pycom12g16930
rosa_chinensis	RchiOBHm_Chr3g0461691 RchiOBHm_Chr6g0312551
rosa_laevigata	RLG00000010317 RLG00000024905
rosa_multiflora	Rmu_co8045116.1_g000001 Rmu_co8349119.1_g000001 Rmu_sc0003094.1_g000012 Rmu_sc0008363.1_g000007 Rmu_sc0038320.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048580 Rroxscaffold_2G00101990 Rroxscaffold_4G00310750 Rroxscaffold_6G00418040
rosa_rugosa	Rorug05G0531400 Rorug05G0531400 Rorug06G0396500
rosa_samantha	Rh3AG111200 Rh3BG114200 Rh3CG116400 Rh3DG116100 Rh4DG219100 Rh6AG513900 Rh6AG514000 Rh6BG525800 Rh6BG525900 Rh6CG530900 Rh6CG531000 Rh6DG516200 Rh6DG516300
rosa_wichuraiana	Rw3G009410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	91, 181, 187
AfaI	GTAC	2 cut(s)	83, 307
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	280, 326
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	416
AoxI	GGCC	2 cut(s)	44, 357
ApoI	RAATTY	3 cut(s)	91, 181, 187
AspS9I	GGNCC	2 cut(s)	45, 368
AvaII	GGWCC	1 cut(s)	368
BaeI	ACNNNNGTAYC	4 cut(s)	51, 84, 306, 339
BccI	CCATC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	2 cut(s)	144, 378
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	2 cut(s)	45, 368
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	46, 359
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	46, 359
Bso31I	GGTCTC	1 cut(s)	416
BspANI	GGCC	2 cut(s)	46, 359
BspCNI	CTCAG	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	174
BspTNI	GGTCTC	1 cut(s)	416
BsrI	ACTGG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	212
BstDEI	CTNAG	2 cut(s)	9, 177
BstF5I	GGATG	1 cut(s)	424
BstMAI	GTCTC	1 cut(s)	416
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstXI	CCANNNNNNTGG	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	46, 359
BtsCI	GGATG	1 cut(s)	424
Cfr13I	GGNCC	2 cut(s)	45, 368
Csp6I	GTAC	2 cut(s)	82, 306
CviAII	CATG	2 cut(s)	266, 361
CviJI	RGCY	8 cut(s)	46, 143, 175, 210, 301, 359, 377, 382
CviKI_1	RGCY	8 cut(s)	46, 143, 175, 210, 301, 359, 377, 382
CviQI	GTAC	2 cut(s)	82, 306
DdeI	CTNAG	2 cut(s)	9, 177
DraI	TTTAAA	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	416
Eco47I	GGWCC	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	210
FaeI	CATG	2 cut(s)	269, 364
FaiI	YATR	7 cut(s)	158, 198, 267, 298, 342, 362, 366
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	2 cut(s)	265, 360
FokI	GGATG	1 cut(s)	431
FspBI	CTAG	2 cut(s)	144, 378
HaeIII	GGCC	2 cut(s)	46, 359
Hin1II	CATG	2 cut(s)	269, 364
HinfI	GANTC	2 cut(s)	121, 431
Hpy188I	TCNGA	5 cut(s)	19, 97, 238, 273, 418
Hpy188III	TCNNGA	1 cut(s)	435
HpyAV	CCTTC	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	3 cut(s)	104, 332, 353
HpyF3I	CTNAG	2 cut(s)	9, 177
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	2 cut(s)	269, 364
LmnI	GCTCC	2 cut(s)	140, 172
LpnPI	CCDG	8 cut(s)	21, 61, 123, 189, 197, 205, 224, 384
MaeI	CTAG	2 cut(s)	144, 378
MaeII	ACGT	1 cut(s)	275
MboII	GAAGA	1 cut(s)	292
MluCI	AATT	3 cut(s)	91, 181, 187
MnlI	CCTC	3 cut(s)	36, 155, 194
MseI	TTAA	3 cut(s)	69, 185, 384
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
NlaIII	CATG	2 cut(s)	269, 364
NlaIV	GGNNCC	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	121, 431
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	2 cut(s)	45, 368
RsaI	GTAC	2 cut(s)	83, 307
RsaNI	GTAC	2 cut(s)	82, 306
SaqAI	TTAA	3 cut(s)	69, 185, 384
Sau96I	GGNCC	2 cut(s)	45, 368
ScrFI	CCNGG	1 cut(s)	212
SetI	ASST	4 cut(s)	145, 205, 278, 288
SinI	GGWCC	1 cut(s)	368
SmiI	ATTTAAAT	1 cut(s)	186
Sse9I	AATT	3 cut(s)	91, 181, 187
SspMI	CTAG	2 cut(s)	144, 378
StyD4I	CCNGG	1 cut(s)	210
SwaI	ATTTAAAT	1 cut(s)	186
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	244
TasI	AATT	3 cut(s)	91, 181, 187
TatI	WGTACW	1 cut(s)	81
TfiI	GAWTC	2 cut(s)	121, 431
Tru1I	TTAA	3 cut(s)	69, 185, 384
Tru9I	TTAA	3 cut(s)	69, 185, 384
TspDTI	ATGAA	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	368
XapI	RAATTY	3 cut(s)	91, 181, 187
XspI	CTAG	2 cut(s)	144, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.