DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g10690 |
| malus_domestica | MD04G1165400.v1.1 MD12G1179500.v1.1 |
| prunus_persica | Prupe.6G284400_v2.0.a1 Prupe.6G284400_v2.0.a1 |
| pyrus_communis | pycom04g14750 pycom12g16930 |
| rosa_chinensis | RchiOBHm_Chr3g0461691 RchiOBHm_Chr6g0312551 |
| rosa_laevigata | RLG00000010317 RLG00000024905 |
| rosa_multiflora | Rmu_co8045116.1_g000001 Rmu_co8349119.1_g000001 Rmu_sc0003094.1_g000012 Rmu_sc0008363.1_g000007 Rmu_sc0038320.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00048580 Rroxscaffold_2G00101990 Rroxscaffold_4G00310750 Rroxscaffold_6G00418040 |
| rosa_rugosa | Rorug05G0531400 Rorug05G0531400 Rorug06G0396500 |
| rosa_samantha | Rh3AG111200 Rh3BG114200 Rh3CG116400 Rh3DG116100 Rh4DG219100 Rh6AG513900 Rh6AG514000 Rh6BG525800 Rh6BG525900 Rh6CG530900 Rh6CG531000 Rh6DG516200 Rh6DG516300 |
| rosa_wichuraiana | Rw3G009410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 57 |
| AcsI | RAATTY | 3 cut(s) | 20, 98, 283 |
| AcuI | CTGAAG | 1 cut(s) | 71 |
| AfaI | GTAC | 1 cut(s) | 111 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 57 |
| AgsI | TTSAA | 2 cut(s) | 26, 234 |
| AluBI | AGCT | 3 cut(s) | 29, 48, 190 |
| AluI | AGCT | 3 cut(s) | 29, 48, 190 |
| ApeKI | GCWGC | 1 cut(s) | 45 |
| ApoI | RAATTY | 3 cut(s) | 20, 98, 283 |
| AsuC2I | CCSGG | 1 cut(s) | 257 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 243, 276 |
| BbvI | GCAGC | 1 cut(s) | 57 |
| BcnI | CCSGG | 1 cut(s) | 257 |
| BisI | GCNGC | 1 cut(s) | 46 |
| BlsI | GCNGC | 1 cut(s) | 47 |
| Bme1390I | CCNGG | 1 cut(s) | 257 |
| BmrFI | CCNGG | 1 cut(s) | 257 |
| BpuMI | CCSGG | 1 cut(s) | 257 |
| BsaBI | GATNNNNATC | 1 cut(s) | 81 |
| BsaJI | CCNNGG | 1 cut(s) | 255 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 57 |
| Bse8I | GATNNNNATC | 1 cut(s) | 81 |
| BseDI | CCNNGG | 1 cut(s) | 255 |
| BseJI | GATNNNNATC | 1 cut(s) | 81 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 57 |
| BseMII | CTCAG | 1 cut(s) | 177 |
| BseXI | GCAGC | 1 cut(s) | 57 |
| BseYI | CCCAGC | 1 cut(s) | 29 |
| BsiSI | CCGG | 1 cut(s) | 257 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 57 |
| BspCNI | CTCAG | 1 cut(s) | 178 |
| BssECI | CCNNGG | 1 cut(s) | 255 |
| Bst4CI | ACNGT | 2 cut(s) | 167, 247 |
| BstC8I | GCNNGC | 1 cut(s) | 192 |
| BstDEI | CTNAG | 2 cut(s) | 178, 186 |
| BstSCI | CCNGG | 1 cut(s) | 255 |
| BstV1I | GCAGC | 1 cut(s) | 57 |
| BtsIMutI | CAGTG | 1 cut(s) | 183 |
| Cac8I | GCNNGC | 1 cut(s) | 192 |
| Csp6I | GTAC | 1 cut(s) | 110 |
| CviAII | CATG | 2 cut(s) | 62, 274 |
| CviJI | RGCY | 4 cut(s) | 29, 48, 124, 190 |
| CviKI_1 | RGCY | 4 cut(s) | 29, 48, 124, 190 |
| CviQI | GTAC | 1 cut(s) | 110 |
| DdeI | CTNAG | 2 cut(s) | 178, 186 |
| Eco57I | CTGAAG | 1 cut(s) | 71 |
| FaeI | CATG | 2 cut(s) | 65, 277 |
| FaiI | YATR | 5 cut(s) | 39, 63, 129, 200, 275 |
| FatI | CATG | 2 cut(s) | 61, 273 |
| Fnu4HI | GCNGC | 1 cut(s) | 46 |
| Fsp4HI | GCNGC | 1 cut(s) | 46 |
| GluI | GCNGC | 1 cut(s) | 46 |
| GsaI | CCCAGC | 1 cut(s) | 33 |
| HapII | CCGG | 1 cut(s) | 257 |
| Hin1II | CATG | 2 cut(s) | 65, 277 |
| HinfI | GANTC | 1 cut(s) | 104 |
| HpaII | CCGG | 1 cut(s) | 257 |
| Hpy188I | TCNGA | 1 cut(s) | 148 |
| Hpy188III | TCNNGA | 1 cut(s) | 159 |
| HpyCH4III | ACNGT | 2 cut(s) | 167, 247 |
| HpyCH4V | TGCA | 3 cut(s) | 194, 207, 225 |
| HpyF3I | CTNAG | 2 cut(s) | 178, 186 |
| Hsp92II | CATG | 2 cut(s) | 65, 277 |
| LmnI | GCTCC | 1 cut(s) | 53 |
| LpnPI | CCDG | 3 cut(s) | 15, 74, 270 |
| Lsp1109I | GCAGC | 1 cut(s) | 57 |
| MaeIII | GTNAC | 2 cut(s) | 10, 241 |
| MboII | GAAGA | 1 cut(s) | 77 |
| MluCI | AATT | 5 cut(s) | 20, 79, 98, 133, 283 |
| MnlI | CCTC | 1 cut(s) | 10 |
| MslI | CAYNNNNRTG | 2 cut(s) | 60, 234 |
| MspI | CCGG | 1 cut(s) | 257 |
| MspR9I | CCNGG | 1 cut(s) | 257 |
| NciI | CCSGG | 1 cut(s) | 257 |
| NlaIII | CATG | 2 cut(s) | 65, 277 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 57 |
| PkrI | GCNGC | 1 cut(s) | 47 |
| PspFI | CCCAGC | 1 cut(s) | 29 |
| RsaI | GTAC | 1 cut(s) | 111 |
| RsaNI | GTAC | 1 cut(s) | 110 |
| RseI | CAYNNNNRTG | 2 cut(s) | 60, 234 |
| SatI | GCNGC | 1 cut(s) | 46 |
| ScrFI | CCNGG | 1 cut(s) | 257 |
| SetI | ASST | 5 cut(s) | 31, 50, 93, 115, 192 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 60, 234 |
| Sse9I | AATT | 5 cut(s) | 20, 79, 98, 133, 283 |
| StyD4I | CCNGG | 1 cut(s) | 255 |
| TaaI | ACNGT | 2 cut(s) | 167, 247 |
| TaqI | TCGA | 1 cut(s) | 158 |
| TasI | AATT | 5 cut(s) | 20, 79, 98, 133, 283 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| TscAI | CASTG | 1 cut(s) | 190 |
| TseI | GCWGC | 1 cut(s) | 45 |
| TspDTI | ATGAA | 2 cut(s) | 17, 215 |
| TspRI | CASTG | 1 cut(s) | 190 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 57 |
| XapI | RAATTY | 3 cut(s) | 20, 98, 283 |