Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003276

Physical Location & Seq

Genomic Coordinates Forward (+)

32865762 .. 32868262

Gene Structure 2501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00310750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGCTTCACCACCATTCACCCTTATCTCTATTTACCGTTCATATGAAAGTGAATCCAAAAAGCGGCAAAACAAACCCCAAAAATGGAAACGAATAATATCAAAATCAATTCAGAGTTCGCAGATCTACGAAACGGTACATGATGAACATATAGATGTGGTCTACAGTCCAAGATCTGGCATAAGGCCTTCAAACGATACTGAAATGCAGAAACAGATTGACGAGAAACTTGGCTACTTGCATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

82

Amino Acids

9.64

Weight (kDa)

9.26

Isoelectric Point (pI)

72.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10690
malus_domestica	MD04G1165400.v1.1 MD12G1179500.v1.1
prunus_persica	Prupe.6G284400_v2.0.a1 Prupe.6G284400_v2.0.a1
pyrus_communis	pycom04g14750 pycom12g16930
rosa_chinensis	RchiOBHm_Chr3g0461691 RchiOBHm_Chr6g0312551
rosa_laevigata	RLG00000010317 RLG00000024905
rosa_multiflora	Rmu_co8045116.1_g000001 Rmu_co8349119.1_g000001 Rmu_sc0003094.1_g000012 Rmu_sc0008363.1_g000007 Rmu_sc0038320.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048580 Rroxscaffold_2G00101990 Rroxscaffold_4G00310750 Rroxscaffold_6G00418040
rosa_rugosa	Rorug05G0531400 Rorug05G0531400 Rorug06G0396500
rosa_samantha	Rh3AG111200 Rh3BG114200 Rh3CG116400 Rh3DG116100 Rh4DG219100 Rh6AG513900 Rh6AG514000 Rh6BG525800 Rh6BG525900 Rh6CG530900 Rh6CG531000 Rh6DG516200 Rh6DG516300
rosa_wichuraiana	Rw3G009410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	1 cut(s)	64
AfaI	GTAC	1 cut(s)	138
AfiI	CCNNNNNNNGG	3 cut(s)	63, 84, 176
AgsI	TTSAA	1 cut(s)	192
AoxI	GGCC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	10
BfmI	CTRYAG	1 cut(s)	163
BglII	AGATCT	2 cut(s)	123, 173
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 84, 176
BseLI	CCNNNNNNNGG	3 cut(s)	63, 84, 176
BshFI	GGCC	1 cut(s)	187
BslI	CCNNNNNNNGG	3 cut(s)	63, 84, 176
BsnI	GGCC	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	123, 173
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	187
BssMI	GATC	2 cut(s)	123, 173
Bst4CI	ACNGT	3 cut(s)	38, 136, 167
BstKTI	GATC	2 cut(s)	126, 176
BstMBI	GATC	2 cut(s)	123, 173
BstSFI	CTRYAG	1 cut(s)	163
BstX2I	RGATCY	2 cut(s)	123, 173
BstYI	RGATCY	2 cut(s)	123, 173
BsuRI	GGCC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	137
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	3 cut(s)	5, 187, 234
CviKI_1	RGCY	3 cut(s)	5, 187, 234
CviQI	GTAC	1 cut(s)	137
DpnI	GATC	2 cut(s)	125, 175
DpnII	GATC	2 cut(s)	123, 173
Eco147I	AGGCCT	1 cut(s)	187
FaeI	CATG	1 cut(s)	143
FaiI	YATR	7 cut(s)	43, 45, 141, 150, 152, 182, 243
FatI	CATG	1 cut(s)	139
FauNDI	CATATG	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	187
Hin1II	CATG	1 cut(s)	143
HinfI	GANTC	1 cut(s)	53
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	114
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	198
HpyCH4III	ACNGT	3 cut(s)	38, 136, 167
HpyCH4V	TGCA	2 cut(s)	208, 241
Hsp92II	CATG	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	123, 173
LpnPI	CCDG	1 cut(s)	162
MalI	GATC	2 cut(s)	125, 175
MboI	GATC	2 cut(s)	123, 173
MflI	RGATCY	2 cut(s)	123, 173
MluCI	AATT	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	153
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	2 cut(s)	123, 173
NlaIII	CATG	1 cut(s)	143
PceI	AGGCCT	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	53
PflMI	CCANNNNNTGG	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	66
PsuI	RGATCY	2 cut(s)	123, 173
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	153
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	2 cut(s)	123, 173
SfcI	CTRYAG	1 cut(s)	163
SgeI	CNNG	5 cut(s)	152, 183, 189, 235, 242
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	1 cut(s)	108
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	1 cut(s)	64
StuI	AGGCCT	1 cut(s)	187
TaaI	ACNGT	3 cut(s)	38, 136, 167
TasI	AATT	1 cut(s)	108
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	53
TspDTI	ATGAA	3 cut(s)	30, 60, 159
Van91I	CCANNNNNTGG	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.