DNA-binding domain in plant proteins such as APETALA2 and EREBPs
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g10690 |
| malus_domestica | MD04G1165400.v1.1 MD12G1179500.v1.1 |
| prunus_persica | Prupe.6G284400_v2.0.a1 Prupe.6G284400_v2.0.a1 |
| pyrus_communis | pycom04g14750 pycom12g16930 |
| rosa_chinensis | RchiOBHm_Chr3g0461691 RchiOBHm_Chr6g0312551 |
| rosa_laevigata | RLG00000010317 RLG00000024905 |
| rosa_multiflora | Rmu_co8045116.1_g000001 Rmu_co8349119.1_g000001 Rmu_sc0003094.1_g000012 Rmu_sc0008363.1_g000007 Rmu_sc0038320.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00048580 Rroxscaffold_2G00101990 Rroxscaffold_4G00310750 Rroxscaffold_6G00418040 |
| rosa_rugosa | Rorug05G0531400 Rorug05G0531400 Rorug06G0396500 |
| rosa_samantha | Rh3AG111200 Rh3BG114200 Rh3CG116400 Rh3DG116100 Rh4DG219100 Rh6AG513900 Rh6AG514000 Rh6BG525800 Rh6BG525900 Rh6CG530900 Rh6CG531000 Rh6DG516200 Rh6DG516300 |
| rosa_wichuraiana | Rw3G009410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 57 |
| AcsI | RAATTY | 2 cut(s) | 20, 98 |
| AcuI | CTGAAG | 1 cut(s) | 71 |
| AfaI | GTAC | 1 cut(s) | 111 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 57 |
| AgsI | TTSAA | 2 cut(s) | 26, 234 |
| AluBI | AGCT | 3 cut(s) | 29, 48, 190 |
| AluI | AGCT | 3 cut(s) | 29, 48, 190 |
| ApeKI | GCWGC | 1 cut(s) | 45 |
| ApoI | RAATTY | 2 cut(s) | 20, 98 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 243, 276 |
| BbvI | GCAGC | 1 cut(s) | 57 |
| BisI | GCNGC | 1 cut(s) | 46 |
| BlsI | GCNGC | 1 cut(s) | 47 |
| BsaBI | GATNNNNATC | 1 cut(s) | 81 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 57 |
| Bse118I | RCCGGY | 1 cut(s) | 256 |
| Bse8I | GATNNNNATC | 1 cut(s) | 81 |
| BseJI | GATNNNNATC | 1 cut(s) | 81 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 57 |
| BseMII | CTCAG | 1 cut(s) | 177 |
| BseXI | GCAGC | 1 cut(s) | 57 |
| BseYI | CCCAGC | 1 cut(s) | 29 |
| BsiSI | CCGG | 1 cut(s) | 257 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 57 |
| BspCNI | CTCAG | 1 cut(s) | 178 |
| BsrFI | RCCGGY | 1 cut(s) | 256 |
| BssAI | RCCGGY | 1 cut(s) | 256 |
| Bst4CI | ACNGT | 2 cut(s) | 167, 247 |
| BstDEI | CTNAG | 2 cut(s) | 178, 186 |
| BstV1I | GCAGC | 1 cut(s) | 57 |
| BtsIMutI | CAGTG | 1 cut(s) | 183 |
| Cfr10I | RCCGGY | 1 cut(s) | 256 |
| Csp6I | GTAC | 1 cut(s) | 110 |
| CviAII | CATG | 2 cut(s) | 62, 274 |
| CviJI | RGCY | 4 cut(s) | 29, 48, 124, 190 |
| CviKI_1 | RGCY | 4 cut(s) | 29, 48, 124, 190 |
| CviQI | GTAC | 1 cut(s) | 110 |
| DdeI | CTNAG | 2 cut(s) | 178, 186 |
| Eco57I | CTGAAG | 1 cut(s) | 71 |
| FaeI | CATG | 2 cut(s) | 65, 277 |
| FaiI | YATR | 5 cut(s) | 39, 63, 129, 200, 275 |
| FatI | CATG | 2 cut(s) | 61, 273 |
| Fnu4HI | GCNGC | 1 cut(s) | 46 |
| Fsp4HI | GCNGC | 1 cut(s) | 46 |
| GluI | GCNGC | 1 cut(s) | 46 |
| GsaI | CCCAGC | 1 cut(s) | 33 |
| HapII | CCGG | 1 cut(s) | 257 |
| Hin1II | CATG | 2 cut(s) | 65, 277 |
| HinfI | GANTC | 1 cut(s) | 104 |
| HpaII | CCGG | 1 cut(s) | 257 |
| Hpy188I | TCNGA | 1 cut(s) | 148 |
| Hpy188III | TCNNGA | 1 cut(s) | 159 |
| HpyCH4III | ACNGT | 2 cut(s) | 167, 247 |
| HpyCH4V | TGCA | 2 cut(s) | 207, 225 |
| HpyF3I | CTNAG | 2 cut(s) | 178, 186 |
| Hsp92II | CATG | 2 cut(s) | 65, 277 |
| LmnI | GCTCC | 1 cut(s) | 53 |
| LpnPI | CCDG | 3 cut(s) | 15, 74, 270 |
| Lsp1109I | GCAGC | 1 cut(s) | 57 |
| MaeIII | GTNAC | 2 cut(s) | 10, 241 |
| MboII | GAAGA | 1 cut(s) | 77 |
| MluCI | AATT | 5 cut(s) | 20, 79, 98, 133, 284 |
| MmeI | TCCRAC | 1 cut(s) | 75 |
| MnlI | CCTC | 1 cut(s) | 10 |
| MslI | CAYNNNNRTG | 2 cut(s) | 60, 234 |
| MspI | CCGG | 1 cut(s) | 257 |
| NlaIII | CATG | 2 cut(s) | 65, 277 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 57 |
| PkrI | GCNGC | 1 cut(s) | 47 |
| PspFI | CCCAGC | 1 cut(s) | 29 |
| RsaI | GTAC | 1 cut(s) | 111 |
| RsaNI | GTAC | 1 cut(s) | 110 |
| RseI | CAYNNNNRTG | 2 cut(s) | 60, 234 |
| SatI | GCNGC | 1 cut(s) | 46 |
| SetI | ASST | 5 cut(s) | 31, 50, 93, 115, 192 |
| SgeI | CNNG | 8 cut(s) | 38, 42, 74, 101, 171, 203, 269, 286 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 60, 234 |
| Sse9I | AATT | 5 cut(s) | 20, 79, 98, 133, 284 |
| TaaI | ACNGT | 2 cut(s) | 167, 247 |
| TaqI | TCGA | 1 cut(s) | 158 |
| TasI | AATT | 5 cut(s) | 20, 79, 98, 133, 284 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| TscAI | CASTG | 1 cut(s) | 190 |
| TseI | GCWGC | 1 cut(s) | 45 |
| TspDTI | ATGAA | 2 cut(s) | 17, 215 |
| TspRI | CASTG | 1 cut(s) | 190 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 57 |
| XapI | RAATTY | 2 cut(s) | 20, 98 |