Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003276

Physical Location & Seq

Genomic Coordinates Reverse (-)

637116 .. 638249

Gene Structure 1134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010317

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAAAATTAATTCTGATTTTGCAAAAGATGGATTTGTGAATCGAATGCCACGTAAAATGCCAACCACAGGAGCTAGAAAGGGTTGTATGAGAGGAAAAGGGGGGCCTGAGAATTTAAATTCCAGTTATAGAGGTGTTAGCCAGGGGATTTGGGGCAAATGGGTTTCTGAAAGTCGAGTGCCAAGTAGTAATAATACACATGGTCTGACGTTGAAGAAGGTTGCTCGTTTATGGCTTGGTACTTTTGAGACTGCTGTTGAAGTTGCACCTGCTTATGATAAAGCTGCAAAGGCCATGTATGGTCCTGTGGCTAGGCTTAACTTCCCCAAGTCTTTGGAAACATCAATCTCGGATGAGACCACAGAATCGTGTGATAATGCGTCTGAATTTGAGGATAGTGTGGATGAAGAGCCAAAGCAGGAAGATGAGGTGTTTGATGCAAACTTTGAAGCACTCGCTATGAACAATGTAAGGGAGTTTGAAGATGTACGGCCTTGGGAACCCAAGTATGTGGAGTGTGAATTGCAAAATGAGGACCAGCTTGCTACAAATGATGTTGAAGTTGAAGCAGTCACTACAAACAATGTAAGGGAGTACGAAAATGTATGGCAATGGGAACCTAACTCCAACCATAGGCATGATAATCATTTGGATAATTATCTTCAGGTCGGGAAATTTGATTCAGTACCTAATGAGAAGCCTTTTACTAATTTGGACTTTTTGGAGATTATTTCGAGGTACAGTGATGATTACTTAGACACTGAGCTTGTAGATATGAAGTGCAATCCAAAAAATTATTGCAAACCATTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

272

Amino Acids

31.02

Weight (kDa)

4.77

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	42 - 101	7.2e-08	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10690
malus_domestica	MD04G1165400.v1.1 MD12G1179500.v1.1
prunus_persica	Prupe.6G284400_v2.0.a1 Prupe.6G284400_v2.0.a1
pyrus_communis	pycom04g14750 pycom12g16930
rosa_chinensis	RchiOBHm_Chr3g0461691 RchiOBHm_Chr6g0312551
rosa_laevigata	RLG00000010317 RLG00000024905
rosa_multiflora	Rmu_co8045116.1_g000001 Rmu_co8349119.1_g000001 Rmu_sc0003094.1_g000012 Rmu_sc0008363.1_g000007 Rmu_sc0038320.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048580 Rroxscaffold_2G00101990 Rroxscaffold_4G00310750 Rroxscaffold_6G00418040
rosa_rugosa	Rorug05G0531400 Rorug05G0531400 Rorug06G0396500
rosa_samantha	Rh3AG111200 Rh3BG114200 Rh3CG116400 Rh3DG116100 Rh4DG219100 Rh6AG513900 Rh6AG514000 Rh6BG525800 Rh6BG525900 Rh6CG530900 Rh6CG531000 Rh6DG516200 Rh6DG516300
rosa_wichuraiana	Rw3G009410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	277
Acc36I	ACCTGC	1 cut(s)	277
AcsI	RAATTY	4 cut(s)	112, 118, 386, 674
AcuI	CTGAAG	1 cut(s)	647
AfaI	GTAC	5 cut(s)	241, 489, 596, 687, 740
AfiI	CCNNNNNNNGG	2 cut(s)	68, 633
AgsI	TTSAA	7 cut(s)	214, 260, 449, 482, 560, 566, 811
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	4 cut(s)	74, 284, 541, 766
AluI	AGCT	4 cut(s)	74, 284, 541, 766
Alw26I	GTCTC	2 cut(s)	242, 350
AoxI	GGCC	3 cut(s)	104, 291, 491
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	4 cut(s)	112, 118, 386, 674
AseI	ATTAAT	1 cut(s)	9
AspS9I	GGNCC	3 cut(s)	104, 302, 535
AvaII	GGWCC	2 cut(s)	302, 535
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	506
BciT130I	CCWGG	1 cut(s)	143
BcoDI	GTCTC	2 cut(s)	242, 350
BfaI	CTAG	2 cut(s)	75, 312
BfuAI	ACCTGC	1 cut(s)	277
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	2 cut(s)	302, 535
BmgT120I	GGNCC	3 cut(s)	104, 302, 535
BmiI	GGNNCC	3 cut(s)	105, 501, 618
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	427
BsaAI	YACGTR	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	657
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	2 cut(s)	142, 494
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 633
Bse1I	ACTGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	617
Bse8I	GATNNNNATC	1 cut(s)	657
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	142, 494
BseGI	GGATG	2 cut(s)	358, 409
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	2 cut(s)	68, 633
BseMI	GCAATG	1 cut(s)	617
BseMII	CTCAG	2 cut(s)	99, 753
BseNI	ACTGG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	271
BshFI	GGCC	3 cut(s)	106, 293, 493
BslI	CCNNNNNNNGG	2 cut(s)	68, 633
BsmAI	GTCTC	2 cut(s)	242, 350
BsmI	GAATGC	1 cut(s)	51
BsnI	GGCC	3 cut(s)	106, 293, 493
Bso31I	GGTCTC	1 cut(s)	350
BspANI	GGCC	3 cut(s)	106, 293, 493
BspCNI	CTCAG	2 cut(s)	100, 754
BspLI	GGNNCC	3 cut(s)	105, 501, 618
BspMI	ACCTGC	1 cut(s)	277
BspQI	GCTCTTC	1 cut(s)	402
BspTNI	GGTCTC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	617
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	2 cut(s)	142, 494
BssT1I	CCWWGG	1 cut(s)	494
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	743
Bst6I	CTCTTC	1 cut(s)	402
BstBAI	YACGTR	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	3 cut(s)	108, 754, 762
BstF5I	GGATG	2 cut(s)	358, 409
BstMAI	GTCTC	2 cut(s)	242, 350
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	271
BstXI	CCANNNNNNTGG	2 cut(s)	334, 511
BsuRI	GGCC	3 cut(s)	106, 293, 493
BtsCI	GGATG	2 cut(s)	358, 409
BtsIMutI	CAGTG	2 cut(s)	748, 759
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	543
Cfr13I	GGNCC	3 cut(s)	104, 302, 535
CseI	GACGC	1 cut(s)	369
Csp6I	GTAC	5 cut(s)	240, 488, 595, 686, 739
CviAII	CATG	3 cut(s)	200, 295, 638
CviQI	GTAC	5 cut(s)	240, 488, 595, 686, 739
DdeI	CTNAG	3 cut(s)	108, 754, 762
DraI	TTTAAA	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	494
Eco31I	GGTCTC	1 cut(s)	350
Eco47I	GGWCC	2 cut(s)	302, 535
Eco57I	CTGAAG	1 cut(s)	647
EcoO109I	RGGNCCY	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	494
ErhI	CCWWGG	1 cut(s)	494
FaeI	CATG	3 cut(s)	203, 298, 641
FatI	CATG	3 cut(s)	199, 294, 637
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	2 cut(s)	365, 416
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	2 cut(s)	75, 312
GluI	GCNGC	1 cut(s)	285
HaeIII	GGCC	3 cut(s)	106, 293, 493
HgaI	GACGC	1 cut(s)	369
Hin1II	CATG	3 cut(s)	203, 298, 641
HinfI	GANTC	3 cut(s)	40, 365, 680
Hpy188I	TCNGA	5 cut(s)	16, 169, 207, 352, 385
Hpy188III	TCNNGA	1 cut(s)	670
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	743
HpyCH4IV	ACGT	2 cut(s)	52, 209
HpyCH4V	TGCA	7 cut(s)	23, 266, 287, 440, 526, 783, 801
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	3 cut(s)	108, 754, 762
HpySE526I	ACGT	2 cut(s)	52, 209
Hsp92II	CATG	3 cut(s)	203, 298, 641
LguI	GCTCTTC	1 cut(s)	402
LmnI	GCTCC	1 cut(s)	71
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	2 cut(s)	75, 312
MaeII	ACGT	2 cut(s)	52, 209
MaeIII	GTNAC	1 cut(s)	571
MboII	GAAGA	5 cut(s)	226, 419, 434, 494, 653
MmeI	TCCRAC	1 cut(s)	651
MnlI	CCTC	6 cut(s)	86, 125, 385, 421, 526, 729
MseI	TTAA	3 cut(s)	9, 116, 318
MslI	CAYNNNNRTG	2 cut(s)	636, 811
MspR9I	CCNGG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	290
NlaIII	CATG	3 cut(s)	203, 298, 641
NlaIV	GGNNCC	3 cut(s)	105, 501, 618
NmuCI	GTSAC	1 cut(s)	571
PaqCI	CACCTGC	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PctI	GAATGC	1 cut(s)	51
PfeI	GAWTC	3 cut(s)	40, 365, 680
PkrI	GCNGC	1 cut(s)	286
Ppu21I	YACGTR	1 cut(s)	53
PshBI	ATTAAT	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	3 cut(s)	105, 501, 618
PspPI	GGNCC	3 cut(s)	104, 302, 535
RsaI	GTAC	5 cut(s)	241, 489, 596, 687, 740
RsaNI	GTAC	5 cut(s)	240, 488, 595, 686, 739
RseI	CAYNNNNRTG	2 cut(s)	636, 811
SapI	GCTCTTC	1 cut(s)	402
SaqAI	TTAA	3 cut(s)	9, 116, 318
SatI	GCNGC	1 cut(s)	285
Sau96I	GGNCC	3 cut(s)	104, 302, 535
ScrFI	CCNGG	1 cut(s)	143
SfaNI	GCATC	1 cut(s)	427
SinI	GGWCC	2 cut(s)	302, 535
SmiI	ATTTAAAT	1 cut(s)	117
SmiMI	CAYNNNNRTG	2 cut(s)	636, 811
SspMI	CTAG	2 cut(s)	75, 312
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	494
SwaI	ATTTAAAT	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	743
TaiI	ACGT	2 cut(s)	55, 212
TaqI	TCGA	3 cut(s)	43, 175, 734
TfiI	GAWTC	3 cut(s)	40, 365, 680
Tru1I	TTAA	3 cut(s)	9, 116, 318
Tru9I	TTAA	3 cut(s)	9, 116, 318
TscAI	CASTG	2 cut(s)	748, 766
TseFI	GTSAC	1 cut(s)	571
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	4 cut(s)	17, 420, 476, 791
TspRI	CASTG	2 cut(s)	748, 766
VpaK11BI	GGWCC	2 cut(s)	302, 535
VspI	ATTAAT	1 cut(s)	9
XapI	RAATTY	4 cut(s)	112, 118, 386, 674
XspI	CTAG	2 cut(s)	75, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.