Rroxscaffold_2G00101990

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
23975483 .. 23978248
2766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00101990.1

Sequence Viewer

Length: 216 bp
ATGCATGAAGTGGTTCAAGACTTCAAGTTAAGAAGGGATACTGGTGGATTGCAACAAGTGACTTTCAATCTTCAGTTTGCAGAGTCCACTCTTTTTGTTGAGGTACTTGGTGAACATATAGATGTGGCCTACAGTCCAAGATCTGGCATGAGGCCTTCAAAAGATACTGAAATGCAGAAACAGATTGACAAGAAACTTGGCTACATGCATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.2

Weight (kDa)

6.25

Isoelectric Point (pI)

71.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 4 cut(s) 17, 25, 67, 159
AoxI GGCC 2 cut(s) 126, 152
Asp700I GAANNNNTTC 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 122
BciVI GTATCC 1 cut(s) 31
BfmI CTRYAG 1 cut(s) 130
BfuI GTATCC 1 cut(s) 31
BglII AGATCT 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 46
BshFI GGCC 2 cut(s) 128, 154
BslI CCNNNNNNNGG 1 cut(s) 143
BsnI GGCC 2 cut(s) 128, 154
Bsp143I GATC 1 cut(s) 140
BspANI GGCC 2 cut(s) 128, 154
BsrI ACTGG 1 cut(s) 46
BssMI GATC 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 134
BstKTI GATC 1 cut(s) 143
BstMBI GATC 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 130
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BsuI GTATCC 1 cut(s) 31
BsuRI GGCC 2 cut(s) 128, 154
Csp6I GTAC 1 cut(s) 104
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 3 cut(s) 5, 148, 205
CviJI RGCY 3 cut(s) 128, 154, 201
CviKI_1 RGCY 3 cut(s) 128, 154, 201
CviQI GTAC 1 cut(s) 104
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
Eco147I AGGCCT 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 56
EcoT22I ATGCAT 2 cut(s) 6, 210
FaeI CATG 3 cut(s) 8, 151, 208
FaiI YATR 6 cut(s) 6, 117, 119, 149, 206, 210
FatI CATG 3 cut(s) 4, 147, 204
HaeIII GGCC 2 cut(s) 128, 154
Hin1II CATG 3 cut(s) 8, 151, 208
HinfI GANTC 1 cut(s) 83
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 87, 113
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 2 cut(s) 87, 113
HpyAV CCTTC 2 cut(s) 27, 165
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 5 cut(s) 4, 52, 80, 175, 208
Hsp92II CATG 3 cut(s) 8, 151, 208
Kzo9I GATC 1 cut(s) 140
LpnPI CCDG 2 cut(s) 27, 129
MaeIII GTNAC 1 cut(s) 58
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MboII GAAGA 1 cut(s) 62
MflI RGATCY 1 cut(s) 140
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 2 cut(s) 94, 144
Mph1103I ATGCAT 2 cut(s) 6, 210
MroXI GAANNNNTTC 1 cut(s) 12
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 120
NdeII GATC 1 cut(s) 140
NlaIII CATG 3 cut(s) 8, 151, 208
NmuCI GTSAC 1 cut(s) 58
NsiI ATGCAT 2 cut(s) 6, 210
NspI RCATGY 1 cut(s) 208
PceI AGGCCT 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 12
PflMI CCANNNNNTGG 1 cut(s) 143
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PsuI RGATCY 1 cut(s) 140
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 120
SaqAI TTAA 1 cut(s) 29
Sau3AI GATC 1 cut(s) 140
SchI GAGTC 1 cut(s) 92
SetI ASST 1 cut(s) 105
SfcI CTRYAG 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 120
SseBI AGGCCT 1 cut(s) 154
StuI AGGCCT 1 cut(s) 154
TaaI ACNGT 1 cut(s) 134
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TseFI GTSAC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 21
Van91I CCANNNNNTGG 1 cut(s) 143
XceI RCATGY 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 12
Zsp2I ATGCAT 2 cut(s) 6, 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.