RLG00000024905

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
40197381 .. 40199509
2129 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024905

Sequence Viewer

Length: 1794 bp
ATGACGCCCAAGAGTTCAGACAGGGATAGAAAAATGGGCAAGAGGCCCAGAGTTGATCATAGTTTGATTAAATGGGAGAAGTACAATGAAAATTTTGATTTTGCTAAAGATGGATTGATGAATCGAATGCCACCTAGGATGCCAACCACGGGAGCTAGAAAGGGTCGTATGAGAGGAAAAGGAGGGCCTGAGAATTTAAATTGCAGTTATAGAGGTGTTAGGCAGAGGATTTGGGGCAAGTGGGTTTCTGAAATTCGAGTACCAAGTAGTAATACACATGGTTTGACGTCGAGAAAGGATGGTCGTCTGTGGCTTGGTACTTTTGATACTGCTGTAGAAGCTGCACATGCTTATGATAAAGCTGCAAAGGCCATGTATGGTCCTGTGGCTCGGCTTAATTTCCCCGAATCTTTGGAACCATCAATGTCGGATGAGACCACAGAATCGTGTGATAATGCGTCTGAATTTGAGGGTAGTGTGGGTGAAAAGCCAAAGCAGGAAGATGAGGTGTCTGATGGAACTGTAAAAGAGCCAAGTAATGAATGGCACTGGGAAGCTAACAGTATTAAATGCGAATTACAAATGGAGGACAAGCTTGTTAATAATGATGTAGAAGTTGAAGAACTGGCTATCAACAATGTAAGGGAGTCAGTAGATGAATGGCATTCAGAACCTAAGTATGTGAAATGTGAATTGCAAACTGAGGATGAGTTTGTTGAAGATGATGTAGAAGTTGAAGCACTCGCTATGAACAATGTAAGGGAGCCTGATGATGTATGGCCTTGGGAACCTAAGTATGTGAAATGTGAATTGGAAAATGAGGACCAGCTTGTTACAAATGATGTTGAAGTTGAAGCAGTCACTACAAACAATGTAAGGGAGTATGAAGATGTATGGCAGAGGGAACCAAAGTATGTAAAATGTGATTTGGAAGCTCAGGACGAGCTTCTTCAAAGGAAAGCTGAAGTTGAAAGACTTGCTATGAACAATGTGACAGAGGAGGAATTTCAAGCCGTGAGTTATGTTGGCAGCTCCAACCATAGACATGATAATCACTTGGATAATTATCTTCAGGTTGGGAAATTTGATTCAGTGCCTAATGATACGCCTTATACTAATTTGGACTTTTCAGATATTTTTTTGAGGTACAGTAATGATTACTTAGATGCTGAGCTTGTAGATGTGAAATGCAATCCAAAAAATGATTGCAACCCTTCAAATGATGTTACAGTTGACACGCCGGTAATGAGCAAACCCATGGAGAAAGAATTTGTTGTGATTCTGGAATCTGGAGACAACAATCTGCATAATGAACTGATAAATGTGGCAAGCAACAATCTGGTAACCAATTTGGGTGAATCTGAAAAGACTGTGCTGCCTCCTAATGAATTTCAGGGTGATATTGCAGAAAGTATGAAACCAAATGGCCATAATGGCTTTGGTGATAATAATGCTTGCTTGCAGGAACATGATGAACAGATAATTGTGGCCTACAGTCCAAGATCTGGCATCAAGCCTTCAACAGATATTGAAACGCAGAAAGAGATCGACAGCAAACTTGGCTACTTGCATAGTTGGTCTCTTGATAAAACATATGGCATTGAGCTACATAATCTCCCTAACCAGTTGCAGACAGCAGATGGCCTATCTGGGAGCTTTAATTATATGGAGGAAGAATGTTTAGGTGTCGATTTTAATCTAGATTGGTCGAGGCAAAATCACTTTTCGGGTGAATTTGAAGAGAATGTGTTGCCTGATTCATGGTTCCCATACTCTCACGGAGGCTCTAGCTAA

Protein Analysis

598

Amino Acids

68.11

Weight (kDa)

4.57

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 69 - 127 6.9e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 290
AccB7I CCANNNNNTGG 1 cut(s) 1505
AcoI YGGCCR 1 cut(s) 1426
AcsI RAATTY 9 cut(s) 91, 193, 252, 464, 1004, 1082, 1268, 1388, 1733
AcuI CTGAAG 2 cut(s) 984, 1055
AcyI GRCGYC 2 cut(s) 5, 287
AfaI GTAC 4 cut(s) 83, 261, 319, 1148
AfiI CCNNNNNNNGG 2 cut(s) 149, 1505
AjuI GAANNNNNNNTTGG 2 cut(s) 794, 826
Alw26I GTCTC 3 cut(s) 428, 1287, 1584
AoxI GGCC 7 cut(s) 44, 185, 369, 779, 1426, 1488, 1642
ApeKI GCWGC 4 cut(s) 341, 362, 1029, 1375
ApoI RAATTY 9 cut(s) 91, 193, 252, 464, 1004, 1082, 1268, 1388, 1733
AspA2I CCTAGG 1 cut(s) 134
AspS9I GGNCC 4 cut(s) 45, 185, 380, 823
AsuHPI GGTGA 5 cut(s) 494, 1367, 1409, 1454, 1742
AvaII GGWCC 2 cut(s) 380, 823
AvrII CCTAGG 1 cut(s) 134
BaeI ACNNNNGTAYC 2 cut(s) 318, 351
BalI TGGCCA 1 cut(s) 1428
BbvI GCAGC 4 cut(s) 328, 349, 1041, 1362
BccI CCATC 5 cut(s) 104, 293, 427, 509, 1634
BceAI ACGGC 1 cut(s) 998
BclI TGATCA 1 cut(s) 55
BcoDI GTCTC 3 cut(s) 428, 1287, 1584
BfaI CTAG 4 cut(s) 135, 156, 1700, 1788
BfmI CTRYAG 2 cut(s) 333, 1492
BglI GCCNNNNNGGC 1 cut(s) 1434
BglII AGATCT 1 cut(s) 1502
BisI GCNGC 4 cut(s) 342, 363, 1030, 1376
BlnI CCTAGG 1 cut(s) 134
BlpI GCTNAGC 1 cut(s) 1170
BlsI GCNGC 4 cut(s) 343, 364, 1031, 1377
Bme18I GGWCC 2 cut(s) 380, 823
BmgT120I GGNCC 4 cut(s) 45, 185, 380, 823
BmiI GGNNCC 5 cut(s) 417, 765, 789, 906, 1766
BmrI ACTGGG 1 cut(s) 559
BmsI GCATC 3 cut(s) 129, 1156, 1518
BmuI ACTGGG 1 cut(s) 559
BpmI CTGGAG 1 cut(s) 1311
Bpu10I CCTNAGC 1 cut(s) 936
Bpu1102I GCTNAGC 1 cut(s) 1170
BsaBI GATNNNNATC 2 cut(s) 1065, 1695
BsaHI GRCGYC 2 cut(s) 5, 287
BsaI GGTCTC 2 cut(s) 428, 1584
BsaJI CCNNGG 4 cut(s) 134, 147, 782, 1257
BsaXI ACNNNNNCTCC 2 cut(s) 1599, 1629
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 1505
Bse118I RCCGGY 1 cut(s) 1240
Bse1I ACTGG 3 cut(s) 554, 630, 1624
Bse8I GATNNNNATC 2 cut(s) 1065, 1695
BseDI CCNNGG 4 cut(s) 134, 147, 782, 1257
BseGI GGATG 4 cut(s) 144, 304, 436, 712
BseJI GATNNNNATC 2 cut(s) 1065, 1695
BseLI CCNNNNNNNGG 2 cut(s) 149, 1505
BseMII CTCAG 4 cut(s) 180, 693, 950, 1161
BseNI ACTGG 3 cut(s) 554, 630, 1624
BseRI GAGGAG 1 cut(s) 1013
BseXI GCAGC 4 cut(s) 328, 349, 1041, 1362
BsgI GTGCAG 1 cut(s) 327
BshFI GGCC 7 cut(s) 46, 187, 371, 781, 1428, 1490, 1644
BsiSI CCGG 1 cut(s) 1241
BslI CCNNNNNNNGG 2 cut(s) 149, 1505
BsmAI GTCTC 3 cut(s) 428, 1287, 1584
BsmI GAATGC 2 cut(s) 132, 664
BsnI GGCC 7 cut(s) 46, 187, 371, 781, 1428, 1490, 1644
Bso31I GGTCTC 2 cut(s) 428, 1584
Bsp143I GATC 3 cut(s) 55, 1502, 1545
Bsp1720I GCTNAGC 1 cut(s) 1170
Bsp19I CCATGG 1 cut(s) 1257
BspANI GGCC 7 cut(s) 46, 187, 371, 781, 1428, 1490, 1644
BspCNI CTCAG 4 cut(s) 181, 694, 949, 1162
BspLI GGNNCC 5 cut(s) 417, 765, 789, 906, 1766
BspTNI GGTCTC 2 cut(s) 428, 1584
BsrFI RCCGGY 1 cut(s) 1240
BsrI ACTGG 3 cut(s) 554, 630, 1624
BssAI RCCGGY 1 cut(s) 1240
BssECI CCNNGG 4 cut(s) 134, 147, 782, 1257
BssMI GATC 3 cut(s) 55, 1502, 1545
BssNI GRCGYC 2 cut(s) 5, 287
BssT1I CCWWGG 3 cut(s) 134, 782, 1257
Bst4CI ACNGT 6 cut(s) 523, 563, 1151, 1231, 1372, 1496
Bst6I CTCTTC 1 cut(s) 1734
BstACI GRCGYC 2 cut(s) 5, 287
BstC8I GCNNGC 3 cut(s) 1330, 1456, 1460
BstDEI CTNAG 7 cut(s) 189, 675, 702, 792, 936, 1162, 1170
BstDSI CCRYGG 2 cut(s) 147, 1257
BstEII GGTNACC 1 cut(s) 1342
BstF5I GGATG 4 cut(s) 144, 304, 436, 712
BstKTI GATC 3 cut(s) 58, 1505, 1548
BstMAI GTCTC 3 cut(s) 428, 1287, 1584
BstMBI GATC 3 cut(s) 55, 1502, 1545
BstMWI GCNNNNNNNGC 5 cut(s) 338, 347, 368, 1434, 1560
BstNSI RCATGY 1 cut(s) 350
BstPI GGTNACC 1 cut(s) 1342
BstSFI CTRYAG 2 cut(s) 333, 1492
BstV1I GCAGC 4 cut(s) 328, 349, 1041, 1362
BstX2I RGATCY 1 cut(s) 1502
BstYI RGATCY 1 cut(s) 1502
BsuRI GGCC 7 cut(s) 46, 187, 371, 781, 1428, 1490, 1644
BtgI CCRYGG 2 cut(s) 147, 1257
BtsCI GGATG 4 cut(s) 144, 304, 436, 712
BtsIMutI CAGTG 2 cut(s) 547, 1098
Cac8I GCNNGC 3 cut(s) 1330, 1456, 1460
Cfr10I RCCGGY 1 cut(s) 1240
Cfr13I GGNCC 4 cut(s) 45, 185, 380, 823
CseI GACGC 2 cut(s) 13, 447
Csp6I GTAC 4 cut(s) 82, 260, 318, 1147
CviAII CATG 7 cut(s) 278, 347, 373, 1046, 1258, 1469, 1761
CviQI GTAC 4 cut(s) 82, 260, 318, 1147
DdeI CTNAG 7 cut(s) 189, 675, 702, 792, 936, 1162, 1170
DpnI GATC 3 cut(s) 57, 1504, 1547
DpnII GATC 3 cut(s) 55, 1502, 1545
DraI TTTAAA 1 cut(s) 198
EaeI YGGCCR 1 cut(s) 1426
Eam1104I CTCTTC 1 cut(s) 1734
EarI CTCTTC 1 cut(s) 1734
Eco130I CCWWGG 3 cut(s) 134, 782, 1257
Eco31I GGTCTC 2 cut(s) 428, 1584
Eco47I GGWCC 2 cut(s) 380, 823
Eco57I CTGAAG 2 cut(s) 984, 1055
Eco91I GGTNACC 1 cut(s) 1342
EcoO109I RGGNCCY 1 cut(s) 185
EcoO65I GGTNACC 1 cut(s) 1342
EcoT14I CCWWGG 3 cut(s) 134, 782, 1257
ErhI CCWWGG 3 cut(s) 134, 782, 1257
FaeI CATG 7 cut(s) 281, 350, 376, 1049, 1261, 1472, 1764
FatI CATG 7 cut(s) 277, 346, 372, 1045, 1257, 1468, 1760
FauNDI CATATG 1 cut(s) 1594
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 4 cut(s) 342, 363, 1030, 1376
FokI GGATG 4 cut(s) 151, 311, 443, 719
Fsp4HI GCNGC 4 cut(s) 342, 363, 1030, 1376
FspBI CTAG 4 cut(s) 135, 156, 1700, 1788
GluI GCNGC 4 cut(s) 342, 363, 1030, 1376
GsuI CTGGAG 1 cut(s) 1311
HaeIII GGCC 7 cut(s) 46, 187, 371, 781, 1428, 1490, 1644
HapII CCGG 1 cut(s) 1241
HgaI GACGC 2 cut(s) 13, 447
Hin1I GRCGYC 2 cut(s) 5, 287
Hin1II CATG 7 cut(s) 281, 350, 376, 1049, 1261, 1472, 1764
HincII GTYRAC 1 cut(s) 1234
HindII GTYRAC 1 cut(s) 1234
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 9 cut(s) 121, 407, 443, 647, 1088, 1279, 1286, 1358, 1757
HpaII CCGG 1 cut(s) 1241
HphI GGTGA 5 cut(s) 494, 1367, 1409, 1454, 1742
Hpy166II GTNNAC 1 cut(s) 1234
Hpy188I TCNGA 8 cut(s) 19, 250, 430, 463, 514, 670, 1132, 1363
Hpy188III TCNNGA 6 cut(s) 291, 938, 1283, 1290, 1583, 1700
Hpy8I GTNNAC 1 cut(s) 1234
Hpy99I CGWCG 1 cut(s) 292
HpyAV CCTTC 2 cut(s) 1224, 1527
HpyCH4III ACNGT 6 cut(s) 523, 563, 1151, 1231, 1372, 1496
HpyCH4IV ACGT 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 5 cut(s) 338, 347, 368, 1434, 1560
HpyF3I CTNAG 7 cut(s) 189, 675, 702, 792, 936, 1162, 1170
HpySE526I ACGT 1 cut(s) 287
Hsp92I GRCGYC 2 cut(s) 5, 287
Hsp92II CATG 7 cut(s) 281, 350, 376, 1049, 1261, 1472, 1764
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 3 cut(s) 55, 1502, 1545
LmnI GCTCC 4 cut(s) 152, 763, 1037, 1653
Lsp1109I GCAGC 4 cut(s) 328, 349, 1041, 1362
LweI GCATC 3 cut(s) 129, 1156, 1518
MaeI CTAG 4 cut(s) 135, 156, 1700, 1788
MaeII ACGT 1 cut(s) 287
MaeIII GTNAC 5 cut(s) 832, 859, 991, 1225, 1342
MalI GATC 3 cut(s) 57, 1504, 1547
MboI GATC 3 cut(s) 55, 1502, 1545
MboII GAAGA 8 cut(s) 512, 632, 731, 899, 941, 1061, 1685, 1751
MflI RGATCY 1 cut(s) 1502
MlsI TGGCCA 1 cut(s) 1428
MluNI TGGCCA 1 cut(s) 1428
MlyI GAGTC 1 cut(s) 656
MmeI TCCRAC 2 cut(s) 408, 1059
Mox20I TGGCCA 1 cut(s) 1428
MscI TGGCCA 1 cut(s) 1428
MseI TTAA 7 cut(s) 69, 197, 396, 567, 600, 1659, 1695
MslI CAYNNNNRTG 2 cut(s) 351, 1044
Msp20I TGGCCA 1 cut(s) 1428
MspI CCGG 1 cut(s) 1241
Mva1269I GAATGC 2 cut(s) 132, 664
MwoI GCNNNNNNNGC 5 cut(s) 338, 347, 368, 1434, 1560
NcoI CCATGG 1 cut(s) 1257
NdeI CATATG 1 cut(s) 1594
NdeII GATC 3 cut(s) 55, 1502, 1545
NlaIII CATG 7 cut(s) 281, 350, 376, 1049, 1261, 1472, 1764
NlaIV GGNNCC 5 cut(s) 417, 765, 789, 906, 1766
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 2 cut(s) 859, 991
NspI RCATGY 1 cut(s) 350
PctI GAATGC 2 cut(s) 132, 664
PfeI GAWTC 8 cut(s) 121, 407, 443, 1088, 1279, 1286, 1358, 1757
PflMI CCANNNNNTGG 1 cut(s) 1505
PkrI GCNGC 4 cut(s) 343, 364, 1031, 1377
PleI GAGTC 1 cut(s) 655
PpsI GAGTC 1 cut(s) 655
PspEI GGTNACC 1 cut(s) 1342
PspN4I GGNNCC 5 cut(s) 417, 765, 789, 906, 1766
PspPI GGNCC 4 cut(s) 45, 185, 380, 823
PsuI RGATCY 1 cut(s) 1502
RsaI GTAC 4 cut(s) 83, 261, 319, 1148
RsaNI GTAC 4 cut(s) 82, 260, 318, 1147
RseI CAYNNNNRTG 2 cut(s) 351, 1044
SaqAI TTAA 7 cut(s) 69, 197, 396, 567, 600, 1659, 1695
SatI GCNGC 4 cut(s) 342, 363, 1030, 1376
Sau3AI GATC 3 cut(s) 55, 1502, 1545
Sau96I GGNCC 4 cut(s) 45, 185, 380, 823
SchI GAGTC 1 cut(s) 656
SfaNI GCATC 3 cut(s) 129, 1156, 1518
SfcI CTRYAG 2 cut(s) 333, 1492
SinI GGWCC 2 cut(s) 380, 823
SmiI ATTTAAAT 1 cut(s) 198
SmiMI CAYNNNNRTG 2 cut(s) 351, 1044
SspMI CTAG 4 cut(s) 135, 156, 1700, 1788
StyI CCWWGG 3 cut(s) 134, 782, 1257
SwaI ATTTAAAT 1 cut(s) 198
TaaI ACNGT 6 cut(s) 523, 563, 1151, 1231, 1372, 1496
TaiI ACGT 1 cut(s) 290
TaqI TCGA 6 cut(s) 124, 256, 290, 1548, 1689, 1709
TatI WGTACW 1 cut(s) 81
TfiI GAWTC 8 cut(s) 121, 407, 443, 1088, 1279, 1286, 1358, 1757
Tru1I TTAA 7 cut(s) 69, 197, 396, 567, 600, 1659, 1695
Tru9I TTAA 7 cut(s) 69, 197, 396, 567, 600, 1659, 1695
TscAI CASTG 2 cut(s) 554, 1098
TseFI GTSAC 2 cut(s) 859, 991
TseI GCWGC 4 cut(s) 341, 362, 1029, 1375
Tsp45I GTSAC 2 cut(s) 859, 991
TspGWI ACGGA 1 cut(s) 1794
TspRI CASTG 2 cut(s) 554, 1098
Van91I CCANNNNNTGG 1 cut(s) 1505
VpaK11BI GGWCC 2 cut(s) 380, 823
XapI RAATTY 9 cut(s) 91, 193, 252, 464, 1004, 1082, 1268, 1388, 1733
XbaI TCTAGA 1 cut(s) 1699
XceI RCATGY 1 cut(s) 350
XcmI CCANNNNNNNNNTGG 2 cut(s) 540, 1436
XmaJI CCTAGG 1 cut(s) 134
XspI CTAG 4 cut(s) 135, 156, 1700, 1788
ZraI GACGTC 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.