DNA-binding domain in plant proteins such as APETALA2 and EREBPs
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g10690 |
| malus_domestica | MD04G1165400.v1.1 MD12G1179500.v1.1 |
| prunus_persica | Prupe.6G284400_v2.0.a1 Prupe.6G284400_v2.0.a1 |
| pyrus_communis | pycom04g14750 pycom12g16930 |
| rosa_chinensis | RchiOBHm_Chr3g0461691 RchiOBHm_Chr6g0312551 |
| rosa_laevigata | RLG00000010317 RLG00000024905 |
| rosa_multiflora | Rmu_co8045116.1_g000001 Rmu_co8349119.1_g000001 Rmu_sc0003094.1_g000012 Rmu_sc0008363.1_g000007 Rmu_sc0038320.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00048580 Rroxscaffold_2G00101990 Rroxscaffold_4G00310750 Rroxscaffold_6G00418040 |
| rosa_rugosa | Rorug05G0531400 Rorug05G0531400 Rorug06G0396500 |
| rosa_samantha | Rh3AG111200 Rh3BG114200 Rh3CG116400 Rh3DG116100 Rh4DG219100 Rh6AG513900 Rh6AG514000 Rh6BG525800 Rh6BG525900 Rh6CG530900 Rh6CG531000 Rh6DG516200 Rh6DG516300 |
| rosa_wichuraiana | Rw3G009410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 10 |
| AcuI | CTGAAG | 1 cut(s) | 330 |
| AfaI | GTAC | 2 cut(s) | 318, 425 |
| AgsI | TTSAA | 4 cut(s) | 164, 278, 389, 395 |
| AluBI | AGCT | 3 cut(s) | 101, 139, 370 |
| AluI | AGCT | 3 cut(s) | 101, 139, 370 |
| AoxI | GGCC | 1 cut(s) | 320 |
| ApoI | RAATTY | 1 cut(s) | 10 |
| AspS9I | GGNCC | 1 cut(s) | 364 |
| AsuHPI | GGTGA | 1 cut(s) | 128 |
| AvaII | GGWCC | 1 cut(s) | 364 |
| BceAI | ACGGC | 1 cut(s) | 335 |
| BfaI | CTAG | 1 cut(s) | 484 |
| BfmI | CTRYAG | 1 cut(s) | 195 |
| Bme18I | GGWCC | 1 cut(s) | 364 |
| BmgT120I | GGNCC | 1 cut(s) | 364 |
| BmiI | GGNNCC | 2 cut(s) | 330, 447 |
| BmsI | GCATC | 1 cut(s) | 49 |
| BsaJI | CCNNGG | 1 cut(s) | 323 |
| Bse1I | ACTGG | 1 cut(s) | 174 |
| BseDI | CCNNGG | 1 cut(s) | 323 |
| BseGI | GGATG | 1 cut(s) | 31 |
| BseMII | CTCAG | 1 cut(s) | 237 |
| BseNI | ACTGG | 1 cut(s) | 174 |
| BseRI | GAGGAG | 1 cut(s) | 31 |
| BshFI | GGCC | 1 cut(s) | 322 |
| BsmI | GAATGC | 1 cut(s) | 208 |
| BsnI | GGCC | 1 cut(s) | 322 |
| BspANI | GGCC | 1 cut(s) | 322 |
| BspCNI | CTCAG | 1 cut(s) | 238 |
| BspLI | GGNNCC | 2 cut(s) | 330, 447 |
| BspQI | GCTCTTC | 1 cut(s) | 24 |
| BsrI | ACTGG | 1 cut(s) | 174 |
| BssECI | CCNNGG | 1 cut(s) | 323 |
| BssT1I | CCWWGG | 1 cut(s) | 323 |
| Bst4CI | ACNGT | 1 cut(s) | 67 |
| Bst6I | CTCTTC | 1 cut(s) | 24 |
| BstDEI | CTNAG | 3 cut(s) | 246, 450, 477 |
| BstF5I | GGATG | 1 cut(s) | 31 |
| BstSFI | CTRYAG | 1 cut(s) | 195 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 340 |
| BsuRI | GGCC | 1 cut(s) | 322 |
| BtsCI | GGATG | 1 cut(s) | 31 |
| Cfr13I | GGNCC | 1 cut(s) | 364 |
| Csp6I | GTAC | 2 cut(s) | 317, 424 |
| CviJI | RGCY | 7 cut(s) | 34, 76, 101, 139, 173, 322, 370 |
| CviKI_1 | RGCY | 7 cut(s) | 34, 76, 101, 139, 173, 322, 370 |
| CviQI | GTAC | 2 cut(s) | 317, 424 |
| DdeI | CTNAG | 3 cut(s) | 246, 450, 477 |
| Eam1104I | CTCTTC | 1 cut(s) | 24 |
| EarI | CTCTTC | 1 cut(s) | 24 |
| Eco130I | CCWWGG | 1 cut(s) | 323 |
| Eco47I | GGWCC | 1 cut(s) | 364 |
| Eco57I | CTGAAG | 1 cut(s) | 330 |
| EcoT14I | CCWWGG | 1 cut(s) | 323 |
| ErhI | CCWWGG | 1 cut(s) | 323 |
| FaiI | YATR | 7 cut(s) | 205, 225, 269, 290, 339, 436, 456 |
| FokI | GGATG | 1 cut(s) | 38 |
| FspBI | CTAG | 1 cut(s) | 484 |
| HaeIII | GGCC | 1 cut(s) | 322 |
| HinfI | GANTC | 3 cut(s) | 191, 236, 305 |
| HphI | GGTGA | 1 cut(s) | 128 |
| Hpy188I | TCNGA | 4 cut(s) | 9, 214, 241, 310 |
| Hpy188III | TCNNGA | 1 cut(s) | 479 |
| HpyCH4III | ACNGT | 1 cut(s) | 67 |
| HpyCH4V | TGCA | 1 cut(s) | 62 |
| HpyF3I | CTNAG | 3 cut(s) | 246, 450, 477 |
| LguI | GCTCTTC | 1 cut(s) | 24 |
| LpnPI | CCDG | 5 cut(s) | 26, 90, 155, 380, 464 |
| LweI | GCATC | 1 cut(s) | 49 |
| MaeI | CTAG | 1 cut(s) | 484 |
| MaeIII | GTNAC | 2 cut(s) | 373, 400 |
| MboII | GAAGA | 4 cut(s) | 41, 56, 176, 323 |
| MluCI | AATT | 3 cut(s) | 10, 119, 350 |
| MlyI | GAGTC | 2 cut(s) | 200, 314 |
| MnlI | CCTC | 5 cut(s) | 9, 43, 124, 241, 355 |
| MseI | TTAA | 2 cut(s) | 144, 261 |
| Mva1269I | GAATGC | 1 cut(s) | 208 |
| NlaIV | GGNNCC | 2 cut(s) | 330, 447 |
| NmuCI | GTSAC | 1 cut(s) | 400 |
| PciSI | GCTCTTC | 1 cut(s) | 24 |
| PctI | GAATGC | 1 cut(s) | 208 |
| PfeI | GAWTC | 1 cut(s) | 236 |
| PleI | GAGTC | 2 cut(s) | 199, 313 |
| PpsI | GAGTC | 2 cut(s) | 199, 313 |
| PspN4I | GGNNCC | 2 cut(s) | 330, 447 |
| PspPI | GGNCC | 1 cut(s) | 364 |
| RsaI | GTAC | 2 cut(s) | 318, 425 |
| RsaNI | GTAC | 2 cut(s) | 317, 424 |
| SapI | GCTCTTC | 1 cut(s) | 24 |
| SaqAI | TTAA | 2 cut(s) | 144, 261 |
| Sau96I | GGNCC | 1 cut(s) | 364 |
| SchI | GAGTC | 2 cut(s) | 200, 314 |
| SetI | ASST | 6 cut(s) | 54, 103, 118, 141, 372, 451 |
| SfaNI | GCATC | 1 cut(s) | 49 |
| SfcI | CTRYAG | 1 cut(s) | 195 |
| SinI | GGWCC | 1 cut(s) | 364 |
| Sse9I | AATT | 3 cut(s) | 10, 119, 350 |
| SspMI | CTAG | 1 cut(s) | 484 |
| StyI | CCWWGG | 1 cut(s) | 323 |
| TaaI | ACNGT | 1 cut(s) | 67 |
| TasI | AATT | 3 cut(s) | 10, 119, 350 |
| TfiI | GAWTC | 1 cut(s) | 236 |
| Tru1I | TTAA | 2 cut(s) | 144, 261 |
| Tru9I | TTAA | 2 cut(s) | 144, 261 |
| TseFI | GTSAC | 1 cut(s) | 400 |
| Tsp45I | GTSAC | 1 cut(s) | 400 |
| TspDTI | ATGAA | 3 cut(s) | 42, 99, 305 |
| VpaK11BI | GGWCC | 1 cut(s) | 364 |
| XapI | RAATTY | 1 cut(s) | 10 |
| XspI | CTAG | 1 cut(s) | 484 |