Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001738

Physical Location & Seq

Genomic Coordinates Reverse (-)

29593326 .. 29594299

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1211500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTTCTCATTGATTATAGTGGAATACTCCGTTGTCTCCAAACTGGATGTAGGCATTGCCGAACCACAAGATGGCTCTGAAGTTGCATTGAAAAGGTTCAAGAACTGCTCTGCAGCCGGAGACCAAGTTTTCACACACGAAGTGGAGGTGATCGCAAGCGTAAGGCATGTGAATCTTGTGTCCTTGAGAGGCTATTGTATTGCGACCGTGTATAAAGGAGGCCACCGGAGAATTCTAGCTTGTGAATTGGTGCGAAATGGAAGCCTCTATGACCATCTGTTCCAACCGAAATTCAAGAAGCTTAGCTGGTCAATTCGCCAAAAGATTGCGCTTGGAGTGGCTCGTGGGTTGGCTTATTTACACCACGGCGTACAGCCTGCTATCATTCATGGTGACATCAAAGCGAGCAACGTGCTTTTAGATGAAGCATTTGAAGCTAAACTGGCAGATTTTGGCCTTGCAAAGTTCACACCAGAGGGGCAGACACATGTGAGCACTAGGGTTGCCGGCACGCTAGGTTATGTTGCTCCTGAGTATGCTTTGTATGGCCAAATATCTCAAAAGATCGATGTGTACAGTTTCGGGGTTGTACTGCTTGAGCTTTTAAGTGGGAAAAAAGCAGTTATAGAATTCAACGACGAGAATAGGCCTTTGTTGTTGTCAGATTGGGCATGGTCACAAGTCAGGGAAGGCAGAGTTTTGGATGTCATTGATGAATGCATGCCGGAATTAGGCCCGCCGGAAGTAATGGAGAAGTATGCTTTGGTTGCTGTGCTTGCTTCTCATCCAGTTGCATATGCTAGGCCATCAATGGACCAGATTGTAAAAATTCTGGAAAATGATATCCCAATTCCAACCATCCCCGATCGTCCATTGCTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

295

Amino Acids

32.5

Weight (kDa)

6.15

Isoelectric Point (pI)

29.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	20 - 275	1.1e-33	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	22 - 209	1.6e-34	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48010
fragaria_vesca	FvH4_2g24291 FvH4_2g24291 FvH4_6g05000 FvH4_6g05020
malus_domestica	MD03G1272600.v1.1 MD04G1211500.v1.1 MD11G1293500.v1.1 MD12G1226500.v1.1
prunus_persica	Prupe.6G332100_v2.0.a1 Prupe.6G332200_v2.0.a1 Prupe.8G248800_v2.0.a1
pyrus_communis	pycom03g21710 pycom11g25970
rosa_chinensis	RchiOBHm_Chr3g0453511 RchiOBHm_Chr3g0453521 RchiOBHm_Chr5g0002211 RchiOBHm_Chr6g0292151
rosa_laevigata	RLG00000012057 RLG00000025506 RLG00000025507 RLG00000031008
rosa_multiflora	Rmu_co8460761.1_g000001 Rmu_sc0000510.1_g000020
rosa_roxburghii	Rroxscaffold_1G00073750 Rroxscaffold_2G00125960 Rroxscaffold_6G00430490 Rroxscaffold_7G00175400
rosa_rugosa	Rorug02G0649700 Rorug02G0649800 Rorug06G0223800
rosa_samantha	Rh1BG359400 Rh3AG052600 Rh3AG052700 Rh3BG054100 Rh3BG054200 Rh3CG053400 Rh3CG053500 Rh3DG054200 Rh3DG054300 Rh6AG337200 Rh6BG344400 Rh6CG351200 Rh6DG337400 Rh7BG191800
rosa_wichuraiana	Rw3G004050 Rw3G004060 Rw6G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	71
AciI	CCGC	1 cut(s)	737
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	4 cut(s)	231, 290, 629, 828
AcuI	CTGAAG	1 cut(s)	99
AdeI	CACNNNGTG	1 cut(s)	142
AfaI	GTAC	3 cut(s)	372, 575, 591
AfiI	CCNNNNNNNGG	2 cut(s)	71, 731
AflIII	ACRYGT	1 cut(s)	487
AgsI	TTSAA	5 cut(s)	91, 100, 295, 434, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	746, 778
AluBI	AGCT	5 cut(s)	239, 301, 306, 437, 601
AluI	AGCT	5 cut(s)	239, 301, 306, 437, 601
Alw21I	GWGCWC	1 cut(s)	497
Alw26I	GTCTC	2 cut(s)	40, 114
AoxI	GGCC	6 cut(s)	220, 454, 547, 647, 733, 803
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	4 cut(s)	231, 290, 629, 828
Asp700I	GAANNNNTTC	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	2 cut(s)	734, 814
AsuHPI	GGTGA	2 cut(s)	160, 404
AvaII	GGWCC	1 cut(s)	814
BalI	TGGCCA	1 cut(s)	549
BauI	CACGAG	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	497
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	4 cut(s)	65, 282, 814, 866
BceAI	ACGGC	1 cut(s)	382
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BcoDI	GTCTC	2 cut(s)	40, 114
BfaI	CTAG	4 cut(s)	236, 498, 515, 801
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	114
BlpI	GCTNAGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	814
BmgT120I	GGNCC	2 cut(s)	734, 814
Bpu1102I	GCTNAGC	1 cut(s)	302
BpuEI	CTTGAG	2 cut(s)	205, 617
Bsa29I	ATCGAT	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	364
BsaWI	WCCGGW	1 cut(s)	225
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 731
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	3 cut(s)	48, 447, 788
Bse3DI	GCAATG	2 cut(s)	54, 872
BseCI	ATCGAT	1 cut(s)	567
BseDI	CCNNGG	1 cut(s)	364
BseGI	GGATG	4 cut(s)	52, 709, 784, 858
BseLI	CCNNNNNNNGG	2 cut(s)	71, 731
BseMI	GCAATG	2 cut(s)	54, 872
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	3 cut(s)	48, 447, 788
BseXI	GCAGC	1 cut(s)	125
Bsh1285I	CGRYCG	2 cut(s)	207, 868
BshFI	GGCC	6 cut(s)	222, 456, 549, 649, 735, 805
BshVI	ATCGAT	1 cut(s)	567
BsiEI	CGRYCG	2 cut(s)	207, 868
BsiHKAI	GWGCWC	1 cut(s)	497
BsiSI	CCGG	5 cut(s)	117, 226, 507, 725, 740
BslI	CCNNNNNNNGG	2 cut(s)	71, 731
BsmAI	GTCTC	2 cut(s)	40, 114
BsmI	GAATGC	1 cut(s)	722
BsnI	GGCC	6 cut(s)	222, 456, 549, 649, 735, 805
Bso31I	GGTCTC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	3 cut(s)	150, 564, 865
Bsp1720I	GCTNAGC	1 cut(s)	302
BspACI	CCGC	1 cut(s)	737
BspANI	GGCC	6 cut(s)	222, 456, 549, 649, 735, 805
BspCNI	CTCAG	1 cut(s)	523
BspDI	ATCGAT	1 cut(s)	567
BspMAI	CTGCAG	1 cut(s)	115
BspTNI	GGTCTC	1 cut(s)	114
BsrDI	GCAATG	2 cut(s)	54, 872
BsrFI	RCCGGY	1 cut(s)	506
BsrGI	TGTACA	1 cut(s)	573
BsrI	ACTGG	3 cut(s)	48, 447, 788
BssAI	RCCGGY	1 cut(s)	506
BssECI	CCNNGG	1 cut(s)	364
BssMI	GATC	3 cut(s)	150, 564, 865
BssSI	CACGAG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	342
Bst4CI	ACNGT	2 cut(s)	208, 578
BstAUI	TGTACA	1 cut(s)	573
BstC8I	GCNNGC	8 cut(s)	157, 378, 406, 508, 512, 722, 737, 777
BstDEI	CTNAG	2 cut(s)	302, 531
BstDSI	CCRYGG	1 cut(s)	364
BstF5I	GGATG	4 cut(s)	52, 709, 784, 858
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	3 cut(s)	153, 567, 868
BstMAI	GTCTC	2 cut(s)	40, 114
BstMBI	GATC	3 cut(s)	150, 564, 865
BstMCI	CGRYCG	2 cut(s)	207, 868
BstMWI	GCNNNNNNNGC	4 cut(s)	434, 443, 767, 776
BstNSI	RCATGY	3 cut(s)	170, 491, 724
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	125
Bsu15I	ATCGAT	1 cut(s)	567
BsuRI	GGCC	6 cut(s)	222, 456, 549, 649, 735, 805
BsuTUI	ATCGAT	1 cut(s)	567
BtgI	CCRYGG	1 cut(s)	364
BtsCI	GGATG	4 cut(s)	52, 709, 784, 858
Cac8I	GCNNGC	8 cut(s)	157, 378, 406, 508, 512, 722, 737, 777
CfoI	GCGC	1 cut(s)	331
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	2 cut(s)	734, 814
ClaI	ATCGAT	1 cut(s)	567
Csp6I	GTAC	3 cut(s)	371, 574, 590
CviAII	CATG	5 cut(s)	167, 389, 488, 672, 721
CviQI	GTAC	3 cut(s)	371, 574, 590
DdeI	CTNAG	2 cut(s)	302, 531
DpnI	GATC	3 cut(s)	152, 566, 867
DpnII	GATC	3 cut(s)	150, 564, 865
DraIII	CACNNNGTG	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	547
Eco147I	AGGCCT	1 cut(s)	649
Eco31I	GGTCTC	1 cut(s)	114
Eco32I	GATATC	1 cut(s)	844
Eco47I	GGWCC	1 cut(s)	814
Eco57I	CTGAAG	1 cut(s)	99
EcoRI	GAATTC	2 cut(s)	231, 629
EcoRV	GATATC	1 cut(s)	844
EcoT22I	ATGCAT	1 cut(s)	722
FaeI	CATG	5 cut(s)	170, 392, 491, 675, 724
FatI	CATG	5 cut(s)	166, 388, 487, 671, 720
FauI	CCCGC	1 cut(s)	744
FauNDI	CATATG	1 cut(s)	796
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	4 cut(s)	59, 716, 771, 845
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	4 cut(s)	236, 498, 515, 801
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	1 cut(s)	114
HaeIII	GGCC	6 cut(s)	222, 456, 549, 649, 735, 805
HapII	CCGG	5 cut(s)	117, 226, 507, 725, 740
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	5 cut(s)	170, 392, 491, 675, 724
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	1 cut(s)	172
HpaII	CCGG	5 cut(s)	117, 226, 507, 725, 740
HphI	GGTGA	2 cut(s)	160, 404
Hpy166II	GTNNAC	2 cut(s)	468, 574
Hpy188I	TCNGA	2 cut(s)	79, 664
Hpy188III	TCNNGA	4 cut(s)	100, 295, 530, 833
Hpy8I	GTNNAC	2 cut(s)	468, 574
Hpy99I	CGWCG	1 cut(s)	641
HpyAV	CCTTC	1 cut(s)	683
HpyCH4III	ACNGT	2 cut(s)	208, 578
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	5 cut(s)	86, 113, 461, 720, 794
HpyF10VI	GCNNNNNNNGC	4 cut(s)	434, 443, 767, 776
HpyF3I	CTNAG	2 cut(s)	302, 531
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	5 cut(s)	170, 392, 491, 675, 724
HspAI	GCGC	1 cut(s)	329
KroI	GCCGGC	1 cut(s)	506
KroNI	GCCGGC	1 cut(s)	508
Kzo9I	GATC	3 cut(s)	150, 564, 865
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	1 cut(s)	125
MaeI	CTAG	4 cut(s)	236, 498, 515, 801
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	2 cut(s)	392, 675
MalI	GATC	3 cut(s)	152, 566, 867
MboI	GATC	3 cut(s)	150, 564, 865
MhlI	GDGCHC	1 cut(s)	497
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	8 cut(s)	231, 245, 290, 312, 629, 728, 828, 849
MluNI	TGGCCA	1 cut(s)	549
MmeI	TCCRAC	2 cut(s)	307, 878
MnlI	CCTC	5 cut(s)	139, 182, 212, 275, 469
Mox20I	TGGCCA	1 cut(s)	549
Mph1103I	ATGCAT	1 cut(s)	722
MroNI	GCCGGC	1 cut(s)	506
MroXI	GAANNNNTTC	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	549
MseI	TTAA	1 cut(s)	605
Msp20I	TGGCCA	1 cut(s)	549
MspI	CCGG	5 cut(s)	117, 226, 507, 725, 740
Mva1269I	GAATGC	1 cut(s)	722
MwoI	GCNNNNNNNGC	4 cut(s)	434, 443, 767, 776
NaeI	GCCGGC	1 cut(s)	508
NdeI	CATATG	1 cut(s)	796
NdeII	GATC	3 cut(s)	150, 564, 865
NgoMIV	GCCGGC	1 cut(s)	506
NlaIII	CATG	5 cut(s)	170, 392, 491, 675, 724
NmuCI	GTSAC	2 cut(s)	392, 675
NsiI	ATGCAT	1 cut(s)	722
NspI	RCATGY	3 cut(s)	170, 491, 724
PaeI	GCATGC	1 cut(s)	724
PceI	AGGCCT	1 cut(s)	649
PciI	ACATGT	1 cut(s)	487
PctI	GAATGC	1 cut(s)	722
PdiI	GCCGGC	1 cut(s)	508
PdmI	GAANNNNTTC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	172
PflMI	CCANNNNNTGG	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	115
Ple19I	CGATCG	1 cut(s)	868
PscI	ACATGT	1 cut(s)	487
PspPI	GGNCC	2 cut(s)	734, 814
PstI	CTGCAG	1 cut(s)	115
PvuI	CGATCG	1 cut(s)	868
RsaI	GTAC	3 cut(s)	372, 575, 591
RsaNI	GTAC	3 cut(s)	371, 574, 590
SaqAI	TTAA	1 cut(s)	605
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	3 cut(s)	150, 564, 865
Sau96I	GGNCC	2 cut(s)	734, 814
SduI	GDGCHC	1 cut(s)	497
SetI	ASST	9 cut(s)	98, 150, 241, 303, 308, 414, 439, 520, 603
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	1 cut(s)	814
SmlI	CTYRAG	2 cut(s)	184, 596
SmoI	CTYRAG	2 cut(s)	184, 596
SphI	GCATGC	1 cut(s)	724
Sse9I	AATT	8 cut(s)	231, 245, 290, 312, 629, 728, 828, 849
SseBI	AGGCCT	1 cut(s)	649
SsiI	CCGC	1 cut(s)	737
SspMI	CTAG	4 cut(s)	236, 498, 515, 801
StuI	AGGCCT	1 cut(s)	649
TaaI	ACNGT	2 cut(s)	208, 578
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	1 cut(s)	567
TasI	AATT	8 cut(s)	231, 245, 290, 312, 629, 728, 828, 849
TatI	WGTACW	2 cut(s)	573, 589
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	605
Tru9I	TTAA	1 cut(s)	605
TseFI	GTSAC	2 cut(s)	392, 675
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	2 cut(s)	392, 675
TspDTI	ATGAA	3 cut(s)	377, 438, 729
TspGWI	ACGGA	1 cut(s)	19
Van91I	CCANNNNNTGG	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	814
XapI	RAATTY	4 cut(s)	231, 290, 629, 828
XceI	RCATGY	3 cut(s)	170, 491, 724
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	4 cut(s)	236, 498, 515, 801
Zsp2I	ATGCAT	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.