Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001738

Physical Location & Seq

Genomic Coordinates Reverse (-)

75852423 .. 75852884

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0649700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAAGAGGATGAGACGTCGTGGAGTAGTACTGGTACTCCTCCTGATTCAAGCTATTGTTGCCATTCGACTCATCATCAAGCCAATAGTAGCTCTGAATCTGCATCTGTTGCTGCTGGTCGTCCATTAAGGCAGTGGTGTTTGTTGGTGTGCCGATTATTAGCCCTCCATTTGTTGGTGTTGGATACTGAAGGTCAAGAGACGCCGCCTGACGATGGTGACGTCCCTGCAGATAATGGTTCTGGTGATGATGAAACGACGGCGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGCTGGTTCTGGTGGTGGCGGTGGTAGGCTGATCCAAGCAGATCAGGCGGTGGTCTGTTTCTGGAAGCGGCTCGCTCGCGCTTGTGGGCGTTTTGGTGGCCGCCGAGAGCTTGAGAGGTGTAGAACTGGCGAGGGCAGAAGAGGCATGGGAATACGCGACCAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

153

Amino Acids

16.7

Weight (kDa)

5.26

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48010
fragaria_vesca	FvH4_2g24291 FvH4_2g24291 FvH4_6g05000 FvH4_6g05020
malus_domestica	MD03G1272600.v1.1 MD04G1211500.v1.1 MD11G1293500.v1.1 MD12G1226500.v1.1
prunus_persica	Prupe.6G332100_v2.0.a1 Prupe.6G332200_v2.0.a1 Prupe.8G248800_v2.0.a1
pyrus_communis	pycom03g21710 pycom11g25970
rosa_chinensis	RchiOBHm_Chr3g0453511 RchiOBHm_Chr3g0453521 RchiOBHm_Chr5g0002211 RchiOBHm_Chr6g0292151
rosa_laevigata	RLG00000012057 RLG00000025506 RLG00000025507 RLG00000031008
rosa_multiflora	Rmu_co8460761.1_g000001 Rmu_sc0000510.1_g000020
rosa_roxburghii	Rroxscaffold_1G00073750 Rroxscaffold_2G00125960 Rroxscaffold_6G00430490 Rroxscaffold_7G00175400
rosa_rugosa	Rorug02G0649700 Rorug02G0649800 Rorug06G0223800
rosa_samantha	Rh1BG359400 Rh3AG052600 Rh3AG052700 Rh3BG054100 Rh3BG054200 Rh3CG053400 Rh3CG053500 Rh3DG054200 Rh3DG054300 Rh6AG337200 Rh6BG344400 Rh6CG351200 Rh6DG337400 Rh7BG191800
rosa_wichuraiana	Rw3G004050 Rw3G004060 Rw6G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	20, 225
AccB7I	CCANNNNNTGG	1 cut(s)	175
AccII	CGCG	2 cut(s)	372, 450
AciI	CCGC	6 cut(s)	206, 263, 312, 341, 361, 394
AclWI	GGATC	1 cut(s)	319
AcoI	YGGCCR	1 cut(s)	391
AcuI	CTGAAG	1 cut(s)	210
AcyI	GRCGYC	3 cut(s)	17, 203, 222
AfaI	GTAC	2 cut(s)	31, 37
AfiI	CCNNNNNNNGG	2 cut(s)	175, 215
AgsI	TTSAA	1 cut(s)	51
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	3 cut(s)	54, 93, 403
AluI	AGCT	3 cut(s)	54, 93, 403
Alw26I	GTCTC	2 cut(s)	8, 194
AlwI	GGATC	1 cut(s)	319
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	374
AsuHPI	GGTGA	2 cut(s)	230, 257
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	1 cut(s)	276
BciT130I	CCWGG	1 cut(s)	455
BciVI	GTATCC	1 cut(s)	178
BcoDI	GTCTC	2 cut(s)	8, 194
BfmI	CTRYAG	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	178
BisI	GCNGC	4 cut(s)	114, 206, 362, 394
BlsI	GCNGC	4 cut(s)	115, 207, 363, 395
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	455
BmrFI	CCNGG	1 cut(s)	455
BmsI	GCATC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	425
BsaHI	GRCGYC	3 cut(s)	17, 203, 222
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 215
Bse1I	ACTGG	2 cut(s)	37, 424
BseBI	CCWGG	1 cut(s)	455
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	2 cut(s)	175, 215
BseNI	ACTGG	2 cut(s)	37, 424
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	100
Bsh1236I	CGCG	2 cut(s)	372, 450
BshFI	GGCC	1 cut(s)	393
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	175, 215
BsmAI	GTCTC	2 cut(s)	8, 194
BsmBI	CGTCTC	2 cut(s)	8, 194
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	393
Bsp143I	GATC	2 cut(s)	324, 334
BspACI	CCGC	6 cut(s)	206, 263, 312, 341, 361, 394
BspANI	GGCC	1 cut(s)	393
BspFNI	CGCG	2 cut(s)	372, 450
BspMAI	CTGCAG	1 cut(s)	232
BspPI	GGATC	1 cut(s)	319
BsrI	ACTGG	2 cut(s)	37, 424
BssMI	GATC	2 cut(s)	324, 334
BssNI	GRCGYC	3 cut(s)	17, 203, 222
Bst2UI	CCWGG	1 cut(s)	455
Bst6I	CTCTTC	1 cut(s)	427
BstACI	GRCGYC	3 cut(s)	17, 203, 222
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	366, 370
BstF5I	GGATG	1 cut(s)	16
BstFNI	CGCG	2 cut(s)	372, 450
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	2 cut(s)	327, 337
BstMAI	GTCTC	2 cut(s)	8, 194
BstMBI	GATC	2 cut(s)	324, 334
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 110, 338, 435
BstNI	CCWGG	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	453
BstSFI	CTRYAG	1 cut(s)	228
BstUI	CGCG	2 cut(s)	372, 450
BstV1I	GCAGC	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	16
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	2 cut(s)	366, 370
CfoI	GCGC	1 cut(s)	374
CseI	GACGC	1 cut(s)	211
CsiI	ACCWGGT	1 cut(s)	453
Csp6I	GTAC	2 cut(s)	30, 36
CviAII	CATG	1 cut(s)	439
CviJI	RGCY	9 cut(s)	54, 83, 93, 164, 296, 322, 364, 393, 403
CviKI_1	RGCY	9 cut(s)	54, 83, 93, 164, 296, 322, 364, 393, 403
CviQI	GTAC	2 cut(s)	30, 36
DpnI	GATC	2 cut(s)	326, 336
DpnII	GATC	2 cut(s)	324, 334
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
EciI	GGCGGA	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	453
Esp3I	CGTCTC	2 cut(s)	8, 194
FaeI	CATG	1 cut(s)	442
FaiI	YATR	1 cut(s)	440
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	1 cut(s)	438
Fnu4HI	GCNGC	4 cut(s)	114, 206, 362, 394
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	4 cut(s)	114, 206, 362, 394
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	4 cut(s)	114, 206, 362, 394
HaeIII	GGCC	1 cut(s)	393
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	1 cut(s)	374
Hin1I	GRCGYC	3 cut(s)	17, 203, 222
Hin1II	CATG	1 cut(s)	442
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HinfI	GANTC	3 cut(s)	47, 70, 98
HphI	GGTGA	2 cut(s)	230, 257
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	3 cut(s)	44, 197, 355
Hpy99I	CGWCG	2 cut(s)	22, 262
HpyAV	CCTTC	1 cut(s)	185
HpyCH4IV	ACGT	2 cut(s)	17, 222
HpyCH4V	TGCA	2 cut(s)	104, 230
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 110, 338, 435
HpySE526I	ACGT	2 cut(s)	17, 222
Hsp92I	GRCGYC	3 cut(s)	17, 203, 222
Hsp92II	CATG	1 cut(s)	442
HspAI	GCGC	1 cut(s)	372
Kzo9I	GATC	2 cut(s)	324, 334
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	1 cut(s)	113
MabI	ACCWGGT	1 cut(s)	453
MaeII	ACGT	2 cut(s)	17, 222
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	2 cut(s)	326, 336
MboI	GATC	2 cut(s)	324, 334
MboII	GAAGA	2 cut(s)	17, 444
MlyI	GAGTC	1 cut(s)	64
MmeI	TCCRAC	1 cut(s)	162
MseI	TTAA	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	455
MvnI	CGCG	2 cut(s)	372, 450
MwoI	GCNNNNNNNGC	4 cut(s)	60, 110, 338, 435
NdeII	GATC	2 cut(s)	324, 334
NlaIII	CATG	1 cut(s)	442
NmeAIII	GCCGAG	1 cut(s)	422
NmuCI	GTSAC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	47, 98
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	4 cut(s)	115, 207, 363, 395
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PstI	CTGCAG	1 cut(s)	232
RsaI	GTAC	2 cut(s)	31, 37
RsaNI	GTAC	2 cut(s)	30, 36
SaqAI	TTAA	1 cut(s)	128
SatI	GCNGC	4 cut(s)	114, 206, 362, 394
Sau3AI	GATC	2 cut(s)	324, 334
ScaI	AGTACT	1 cut(s)	31
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	455
SetI	ASST	8 cut(s)	20, 56, 95, 196, 225, 405, 413, 459
SexAI	ACCWGGT	1 cut(s)	453
SfaNI	GCATC	1 cut(s)	113
SfcI	CTRYAG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SsiI	CCGC	6 cut(s)	206, 263, 312, 341, 361, 394
StyD4I	CCNGG	1 cut(s)	453
TaiI	ACGT	2 cut(s)	20, 225
TaqI	TCGA	1 cut(s)	68
TatI	WGTACW	1 cut(s)	29
TauI	GCSGC	3 cut(s)	208, 364, 396
TfiI	GAWTC	2 cut(s)	47, 98
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TscAI	CASTG	1 cut(s)	140
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	140
Van91I	CCANNNNNTGG	1 cut(s)	175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	132
ZraI	GACGTC	2 cut(s)	18, 223
ZrmI	AGTACT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.