Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001738

Physical Location & Seq

Genomic Coordinates Forward (+)

61005779 .. 61007964

Gene Structure 2186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00125960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAGTCACAAGAATCAACCCTTCCAGGTGGCAAGAGGCCTAGAACCACTGATGTTGAGAACAAGCCTAACAAGAAGGCTAAAAATCGGAAAGGCTTAAACTTTAGAGAGATAATGGCCTTTCCTCATAATGATGCCAATGCCATCGCTGGGGAAGTACAGTCTTGGATAAGGTTTTACAAAAATGATCATCGTGATGCTGCTCGGGTTGAACTCTTCAATCTCATACTTGAGGCATGTGGACTGGAATTTCCTAAGATTAATAACAAGGAGCTGGTCAAGTGGTATCCCATCAACAAGAAGAATTTGCAAAGATATCATATTGACGATGTTCGATGTGATATGATCCAGTTCATTGAAAGTAGGGTGGTTAGAGACTATGACACTCTGCAAAATGAGTTCCCACATATCAAGGACCATCTCCAAACATTTTGCCATAATTTGGTCATGTGGTCTCACAATGAGCCACTTTTTTTTGACACCATGAAGGACTGCCTGGATTGGTTTACCACATTTTCATGGTTAGTGCTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051754 GO:0061982 GO:0061983 GO:0070192 GO:0070601 GO:0071840 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

STAG

Protein Analysis

178

Amino Acids

21.23

Weight (kDa)

7.05

Isoelectric Point (pI)

60.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48010
fragaria_vesca	FvH4_2g24291 FvH4_2g24291 FvH4_6g05000 FvH4_6g05020
malus_domestica	MD03G1272600.v1.1 MD04G1211500.v1.1 MD11G1293500.v1.1 MD12G1226500.v1.1
prunus_persica	Prupe.6G332100_v2.0.a1 Prupe.6G332200_v2.0.a1 Prupe.8G248800_v2.0.a1
pyrus_communis	pycom03g21710 pycom11g25970
rosa_chinensis	RchiOBHm_Chr3g0453511 RchiOBHm_Chr3g0453521 RchiOBHm_Chr5g0002211 RchiOBHm_Chr6g0292151
rosa_laevigata	RLG00000012057 RLG00000025506 RLG00000025507 RLG00000031008
rosa_multiflora	Rmu_co8460761.1_g000001 Rmu_sc0000510.1_g000020
rosa_roxburghii	Rroxscaffold_1G00073750 Rroxscaffold_2G00125960 Rroxscaffold_6G00430490 Rroxscaffold_7G00175400
rosa_rugosa	Rorug02G0649700 Rorug02G0649800 Rorug06G0223800
rosa_samantha	Rh1BG359400 Rh3AG052600 Rh3AG052700 Rh3BG054100 Rh3BG054200 Rh3CG053400 Rh3CG053500 Rh3DG054200 Rh3DG054300 Rh6AG337200 Rh6BG344400 Rh6CG351200 Rh6DG337400 Rh7BG191800
rosa_wichuraiana	Rw3G004050 Rw3G004060 Rw6G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	442
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	2 cut(s)	248, 304
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	150, 442
AgsI	TTSAA	3 cut(s)	212, 220, 359
AjnI	CCWGG	2 cut(s)	25, 495
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
Alw26I	GTCTC	2 cut(s)	369, 459
AlwI	GGATC	1 cut(s)	340
Ama87I	CYCGRG	1 cut(s)	204
AoxI	GGCC	2 cut(s)	38, 117
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	2 cut(s)	248, 304
AseI	ATTAAT	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	415
AvaI	CYCGRG	1 cut(s)	204
AvaII	GGWCC	1 cut(s)	415
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	3 cut(s)	152, 299, 426
BciT130I	CCWGG	2 cut(s)	27, 497
BciVI	GTATCC	1 cut(s)	297
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	2 cut(s)	369, 459
BfaI	CTAG	1 cut(s)	42
BfuI	GTATCC	1 cut(s)	297
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	2 cut(s)	27, 497
Bme18I	GGWCC	1 cut(s)	415
BmeT110I	CYCGRG	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	415
BmrFI	CCNGG	2 cut(s)	27, 497
BmsI	GCATC	2 cut(s)	124, 187
BpuEI	CTTGAG	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 442
Bse1I	ACTGG	2 cut(s)	249, 349
BseBI	CCWGG	2 cut(s)	27, 497
BseLI	CCNNNNNNNGG	2 cut(s)	150, 442
BseNI	ACTGG	2 cut(s)	249, 349
BseXI	GCAGC	1 cut(s)	187
BseYI	CCCAGC	1 cut(s)	149
BshFI	GGCC	2 cut(s)	40, 119
BsiHKCI	CYCGRG	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	150, 442
BsmAI	GTCTC	2 cut(s)	369, 459
BsnI	GGCC	2 cut(s)	40, 119
Bso31I	GGTCTC	1 cut(s)	459
BsoBI	CYCGRG	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	187, 345
BspANI	GGCC	2 cut(s)	40, 119
BspPI	GGATC	1 cut(s)	340
BspTNI	GGTCTC	1 cut(s)	459
BsrI	ACTGG	2 cut(s)	249, 349
BssMI	GATC	2 cut(s)	187, 345
Bst2UI	CCWGG	2 cut(s)	27, 497
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	221
BstDEI	CTNAG	1 cut(s)	255
BstKTI	GATC	2 cut(s)	190, 348
BstMAI	GTCTC	2 cut(s)	369, 459
BstMBI	GATC	2 cut(s)	187, 345
BstNI	CCWGG	2 cut(s)	27, 497
BstNSI	RCATGY	1 cut(s)	240
BstSCI	CCNGG	2 cut(s)	25, 495
BstV1I	GCAGC	1 cut(s)	187
BsuI	GTATCC	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	40, 119
BtgZI	GCGATG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	158
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	4 cut(s)	237, 448, 484, 519
CviJI	RGCY	7 cut(s)	40, 67, 80, 96, 119, 274, 466
CviKI_1	RGCY	7 cut(s)	40, 67, 80, 96, 119, 274, 466
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	2 cut(s)	189, 347
DpnII	GATC	2 cut(s)	187, 345
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco147I	AGGCCT	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	459
Eco32I	GATATC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	204
EcoRII	CCWGG	2 cut(s)	25, 495
EcoRV	GATATC	1 cut(s)	317
FaeI	CATG	4 cut(s)	240, 451, 487, 522
FatI	CATG	4 cut(s)	236, 447, 483, 518
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	1 cut(s)	201
GsaI	CCCAGC	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	40, 119
Hin1II	CATG	4 cut(s)	240, 451, 487, 522
HinfI	GANTC	2 cut(s)	5, 14
Hpy166II	GTNNAC	2 cut(s)	242, 507
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	2 cut(s)	242, 507
HpyAV	CCTTC	3 cut(s)	32, 70, 481
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	310, 391
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	4 cut(s)	240, 451, 487, 522
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	187, 345
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	8 cut(s)	12, 39, 135, 230, 260, 362, 482, 509
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	2 cut(s)	124, 187
MaeI	CTAG	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	2 cut(s)	189, 347
MboI	GATC	2 cut(s)	187, 345
MboII	GAAGA	2 cut(s)	208, 313
MluCI	AATT	4 cut(s)	248, 304, 439, 532
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	3 cut(s)	30, 135, 226
MseI	TTAA	3 cut(s)	98, 261, 531
MslI	CAYNNNNRTG	3 cut(s)	132, 195, 517
MspR9I	CCNGG	2 cut(s)	27, 497
MvaI	CCWGG	2 cut(s)	27, 497
NdeII	GATC	2 cut(s)	187, 345
NlaIII	CATG	4 cut(s)	240, 451, 487, 522
NmuCI	GTSAC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	14
PflMI	CCANNNNNTGG	1 cut(s)	442
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	25, 495
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	2 cut(s)	25, 495
PspPI	GGNCC	1 cut(s)	415
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	3 cut(s)	132, 195, 517
SaqAI	TTAA	3 cut(s)	98, 261, 531
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	187, 345
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	27, 497
SetI	ASST	3 cut(s)	31, 176, 276
SfaNI	GCATC	2 cut(s)	124, 187
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	3 cut(s)	132, 195, 517
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	4 cut(s)	248, 304, 439, 532
SseBI	AGGCCT	1 cut(s)	40
SspMI	CTAG	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	40
StyD4I	CCNGG	2 cut(s)	25, 495
TaaI	ACNGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	334
TasI	AATT	4 cut(s)	248, 304, 439, 532
TatI	WGTACW	1 cut(s)	157
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	3 cut(s)	98, 261, 531
Tru9I	TTAA	3 cut(s)	98, 261, 531
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	3 cut(s)	343, 500, 507
TspRI	CASTG	1 cut(s)	55
Van91I	CCANNNNNTGG	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	415
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	2 cut(s)	248, 304
XceI	RCATGY	1 cut(s)	240
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.