Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001738

Physical Location & Seq

Genomic Coordinates Forward (+)

94487764 .. 94489914

Gene Structure 2151 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00073750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGTGTGCAGAGATAGTGGCCCTCCCAATTGAAGATACCACTAGCATCTCTCAGCAAGTACAGGCTTGGATAAATTTTTACAAAAAAGATCATCGTGATTCTGCTCGAGTTGAGCTCTTCAACCTGATACTTGAGGCATGTGGTCTGGAATTTTCTAGGATTGATGATAAGGTGCTGGCCTATTGTTATCCCATAAGAAAGAACACTCTGCCGGATCTTCATATTGAAGATGTTAGATGTGATTTGAGCAACCTCATTAGCACTAGCTCGGTTAGAGACTATGAAACCCTGCAGAAGGAGTTTCCACATATCAAGCACCATCTCAAAGAATTTTGTCGTAATTTCATCATTCGGTCTCAAAATGAGCCTTTCTTTTTTCACACTTTGAAGGACTGCATGGATTATATGACGACTTTGTCATGCCATCTCCCAAGCAGATACAACAAAAGTGCTACATGGATGGCTCTTGAAATGCTCAGTTCCTTGGTAGCTATAACCACAATTGGACGTGATGAAGGGAAGATGGATCGACACTTGAAGGATTTGGAGCGGAATGTGATTCTGTATTTTCAGGGGTTCTTTCTTCGGGTCTATAAGGACAATGACCAGGAAATTCAGTGCTCATGTCTAGAGGAACTAAAGAAGTGGAACAGAACATACCCATGGATCTTCTCGAACGCAGCATACAAGGAATGCCTTCAAGACAGCCAAAAAATAGCAGACGAAGATGCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051754 GO:0061982 GO:0061983 GO:0070192 GO:0070601 GO:0071840 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

STAG

Protein Analysis

245

Amino Acids

28.91

Weight (kDa)

5.64

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48010
fragaria_vesca	FvH4_2g24291 FvH4_2g24291 FvH4_6g05000 FvH4_6g05020
malus_domestica	MD03G1272600.v1.1 MD04G1211500.v1.1 MD11G1293500.v1.1 MD12G1226500.v1.1
prunus_persica	Prupe.6G332100_v2.0.a1 Prupe.6G332200_v2.0.a1 Prupe.8G248800_v2.0.a1
pyrus_communis	pycom03g21710 pycom11g25970
rosa_chinensis	RchiOBHm_Chr3g0453511 RchiOBHm_Chr3g0453521 RchiOBHm_Chr5g0002211 RchiOBHm_Chr6g0292151
rosa_laevigata	RLG00000012057 RLG00000025506 RLG00000025507 RLG00000031008
rosa_multiflora	Rmu_co8460761.1_g000001 Rmu_sc0000510.1_g000020
rosa_roxburghii	Rroxscaffold_1G00073750 Rroxscaffold_2G00125960 Rroxscaffold_6G00430490 Rroxscaffold_7G00175400
rosa_rugosa	Rorug02G0649700 Rorug02G0649800 Rorug06G0223800
rosa_samantha	Rh1BG359400 Rh3AG052600 Rh3AG052700 Rh3BG054100 Rh3BG054200 Rh3CG053400 Rh3CG053500 Rh3DG054200 Rh3DG054300 Rh6AG337200 Rh6BG344400 Rh6CG351200 Rh6DG337400 Rh7BG191800
rosa_wichuraiana	Rw3G004050 Rw3G004060 Rw6G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	415
AccBSI	CCGCTC	1 cut(s)	550
AciI	CCGC	1 cut(s)	550
AclWI	GGATC	3 cut(s)	222, 534, 674
AcsI	RAATTY	4 cut(s)	73, 149, 329, 612
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	7 cut(s)	32, 121, 227, 388, 470, 538, 701
AjiI	CACGTC	1 cut(s)	509
AjnI	CCWGG	1 cut(s)	606
AluBI	AGCT	3 cut(s)	115, 267, 491
AluI	AGCT	3 cut(s)	115, 267, 491
Alw21I	GWGCWC	2 cut(s)	117, 623
Alw26I	GTCTC	2 cut(s)	270, 360
AlwI	GGATC	3 cut(s)	222, 534, 674
Ama87I	CYCGRG	1 cut(s)	105
AoxI	GGCC	2 cut(s)	18, 177
ApeKI	GCWGC	1 cut(s)	680
ApoI	RAATTY	4 cut(s)	73, 149, 329, 612
Asp700I	GAANNNNTTC	1 cut(s)	696
AspS9I	GGNCC	1 cut(s)	19
AvaI	CYCGRG	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	117
Bbv12I	GWGCWC	2 cut(s)	117, 623
BbvI	GCAGC	1 cut(s)	692
BccI	CCATC	4 cut(s)	327, 432, 454, 517
BciT130I	CCWGG	1 cut(s)	608
BcoDI	GTCTC	2 cut(s)	270, 360
BfaI	CTAG	4 cut(s)	42, 156, 264, 629
BfmI	CTRYAG	1 cut(s)	290
BisI	GCNGC	1 cut(s)	681
BlsI	GCNGC	1 cut(s)	682
Bme1390I	CCNGG	1 cut(s)	608
BmeT110I	CYCGRG	1 cut(s)	105
BmgBI	CACGTC	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	19
BmrFI	CCNGG	1 cut(s)	608
BmsI	GCATC	2 cut(s)	54, 718
BplI	GAGNNNNNCTC	2 cut(s)	99, 131
BpuEI	CTTGAG	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	483, 662
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	608
BseDI	CCNNGG	2 cut(s)	483, 662
BseGI	GGATG	1 cut(s)	465
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMII	CTCAG	2 cut(s)	65, 490
BseXI	GCAGC	1 cut(s)	692
BsgI	GTGCAG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	20, 179
BsiHKAI	GWGCWC	2 cut(s)	117, 623
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	2 cut(s)	270, 360
BsmI	GAATGC	1 cut(s)	698
BsnI	GGCC	2 cut(s)	20, 179
Bso31I	GGTCTC	1 cut(s)	360
BsoBI	CYCGRG	1 cut(s)	105
Bsp1286I	GDGCHC	2 cut(s)	117, 623
Bsp143I	GATC	4 cut(s)	88, 214, 526, 666
Bsp19I	CCATGG	1 cut(s)	662
BspACI	CCGC	1 cut(s)	550
BspANI	GGCC	2 cut(s)	20, 179
BspCNI	CTCAG	2 cut(s)	64, 489
BspMAI	CTGCAG	1 cut(s)	294
BspPI	GGATC	3 cut(s)	222, 534, 674
BspQI	GCTCTTC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	360
BsrBI	CCGCTC	1 cut(s)	550
BssECI	CCNNGG	2 cut(s)	483, 662
BssMI	GATC	4 cut(s)	88, 214, 526, 666
BssT1I	CCWWGG	2 cut(s)	483, 662
Bst2UI	CCWGG	1 cut(s)	608
Bst6I	CTCTTC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	51, 476
BstDSI	CCRYGG	1 cut(s)	662
BstENI	CCTNNNNNAGG	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	465
BstKTI	GATC	4 cut(s)	91, 217, 529, 669
BstMAI	GTCTC	2 cut(s)	270, 360
BstMBI	GATC	4 cut(s)	88, 214, 526, 666
BstNI	CCWGG	1 cut(s)	608
BstNSI	RCATGY	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	606
BstSFI	CTRYAG	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	692
BstX2I	RGATCY	2 cut(s)	214, 666
BstYI	RGATCY	2 cut(s)	214, 666
BsuRI	GGCC	2 cut(s)	20, 179
BtgI	CCRYGG	1 cut(s)	662
BtrI	CACGTC	1 cut(s)	509
BtsCI	GGATG	1 cut(s)	465
BtsIMutI	CAGTG	1 cut(s)	623
Cac8I	GCNNGC	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	6 cut(s)	138, 397, 420, 456, 624, 663
CviJI	RGCY	9 cut(s)	20, 65, 115, 179, 267, 367, 464, 491, 708
CviKI_1	RGCY	9 cut(s)	20, 65, 115, 179, 267, 367, 464, 491, 708
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	2 cut(s)	51, 476
DpnI	GATC	4 cut(s)	90, 216, 528, 668
DpnII	GATC	4 cut(s)	88, 214, 526, 666
DrdI	GACNNNNNNGTC	1 cut(s)	415
DseDI	GACNNNNNNGTC	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	483, 662
Eco24I	GRGCYC	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	105
EcoICRI	GAGCTC	1 cut(s)	115
EcoNI	CCTNNNNNAGG	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	606
EcoT14I	CCWWGG	2 cut(s)	483, 662
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	2 cut(s)	483, 662
FaeI	CATG	6 cut(s)	141, 400, 423, 459, 627, 666
FatI	CATG	6 cut(s)	137, 396, 419, 455, 623, 662
Fnu4HI	GCNGC	1 cut(s)	681
FokI	GGATG	1 cut(s)	472
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	681
FspBI	CTAG	4 cut(s)	42, 156, 264, 629
GluI	GCNGC	1 cut(s)	681
HaeIII	GGCC	2 cut(s)	20, 179
HapII	CCGG	1 cut(s)	212
Hin1II	CATG	6 cut(s)	141, 400, 423, 459, 627, 666
HinfI	GANTC	2 cut(s)	98, 559
HpaII	CCGG	1 cut(s)	212
Hpy188III	TCNNGA	6 cut(s)	95, 146, 467, 629, 673, 701
HpyAV	CCTTC	5 cut(s)	289, 382, 509, 532, 707
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	3 cut(s)	8, 292, 396
HpyF3I	CTNAG	2 cut(s)	51, 476
HpySE526I	ACGT	1 cut(s)	508
Hsp92II	CATG	6 cut(s)	141, 400, 423, 459, 627, 666
Kzo9I	GATC	4 cut(s)	88, 214, 526, 666
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	547
LpnPI	CCDG	9 cut(s)	47, 131, 137, 161, 225, 302, 557, 593, 620
Lsp1109I	GCAGC	1 cut(s)	692
LweI	GCATC	2 cut(s)	54, 718
MaeI	CTAG	4 cut(s)	42, 156, 264, 629
MaeII	ACGT	1 cut(s)	508
MalI	GATC	4 cut(s)	90, 216, 528, 668
MbiI	CCGCTC	1 cut(s)	550
MboI	GATC	4 cut(s)	88, 214, 526, 666
MboII	GAAGA	8 cut(s)	44, 109, 209, 239, 532, 575, 661, 737
MfeI	CAATTG	2 cut(s)	27, 501
MflI	RGATCY	2 cut(s)	214, 666
MhlI	GDGCHC	2 cut(s)	117, 623
MluCI	AATT	8 cut(s)	27, 73, 149, 329, 340, 501, 612, 733
MnlI	CCTC	4 cut(s)	32, 127, 263, 625
MroXI	GAANNNNTTC	1 cut(s)	696
MslI	CAYNNNNRTG	1 cut(s)	661
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	608
MunI	CAATTG	2 cut(s)	27, 501
Mva1269I	GAATGC	1 cut(s)	698
MvaI	CCWGG	1 cut(s)	608
NcoI	CCATGG	1 cut(s)	662
NdeII	GATC	4 cut(s)	88, 214, 526, 666
NlaIII	CATG	6 cut(s)	141, 400, 423, 459, 627, 666
NspI	RCATGY	1 cut(s)	141
PaeR7I	CTCGAG	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	122
PctI	GAATGC	1 cut(s)	698
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	2 cut(s)	98, 559
PflFI	GACNNNGTC	1 cut(s)	415
PkrI	GCNGC	1 cut(s)	682
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	606
PspGI	CCWGG	1 cut(s)	606
PspPI	GGNCC	1 cut(s)	19
PspXI	VCTCGAGB	1 cut(s)	105
PsrI	GAACNNNNNNTAC	4 cut(s)	641, 668, 673, 700
PstI	CTGCAG	1 cut(s)	294
PsuI	RGATCY	2 cut(s)	214, 666
PsyI	GACNNNGTC	1 cut(s)	415
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	661
SacI	GAGCTC	1 cut(s)	117
SapI	GCTCTTC	1 cut(s)	122
SatI	GCNGC	1 cut(s)	681
Sau3AI	GATC	4 cut(s)	88, 214, 526, 666
Sau96I	GGNCC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	608
SduI	GDGCHC	2 cut(s)	117, 623
SetI	ASST	7 cut(s)	117, 126, 174, 255, 269, 493, 511
SfaNI	GCATC	2 cut(s)	54, 718
SfcI	CTRYAG	1 cut(s)	290
Sfr274I	CTCGAG	1 cut(s)	105
SlaI	CTCGAG	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	661
SmlI	CTYRAG	2 cut(s)	105, 131
SmoI	CTYRAG	2 cut(s)	105, 131
Sse9I	AATT	8 cut(s)	27, 73, 149, 329, 340, 501, 612, 733
SsiI	CCGC	1 cut(s)	550
SspMI	CTAG	4 cut(s)	42, 156, 264, 629
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	606
StyI	CCWWGG	2 cut(s)	483, 662
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	3 cut(s)	106, 529, 674
TaqII	GACCGA	1 cut(s)	342
TasI	AATT	8 cut(s)	27, 73, 149, 329, 340, 501, 612, 733
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	2 cut(s)	98, 559
TscAI	CASTG	1 cut(s)	623
TseI	GCWGC	1 cut(s)	680
TspDTI	ATGAA	4 cut(s)	209, 297, 334, 528
TspRI	CASTG	1 cut(s)	623
Tth111I	GACNNNGTC	1 cut(s)	415
XagI	CCTNNNNNAGG	1 cut(s)	293
XapI	RAATTY	4 cut(s)	73, 149, 329, 612
XbaI	TCTAGA	1 cut(s)	628
XceI	RCATGY	1 cut(s)	141
XhoI	CTCGAG	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	696
XspI	CTAG	4 cut(s)	42, 156, 264, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.