Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001738

Physical Location & Seq

Genomic Coordinates Reverse (-)

48992307 .. 48995053

Gene Structure 2747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG359400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCTCAACTTCACGATCCTGCAGCAGTTCGACCTGGGCTCCAAGCGCCCCCAAATGAACCAGAACATGGAGTGCCAGTACATCCTCCAGGGCCTCCGCCTCGTCGATTCCCACTACCTCCAACTCACCAGCAACTTCCTCCCCCCGCCCAACGCCTCCGACTCCTGCTGGTCTGCCTACCAAACCCTCGCCGACAAATTCGTCGCCAACTTCTACATTCGCTTCACCTGCGGCTTCGAGACCTCCTGGATCTCCCAGGGCTGCATGAACATCACCACCAAGGCCCAATTCGAGGACCTCGTCGGCCAAACCGCCCTAGACGGCGTCGTTTCCAACTGCAACCAGTCGCTTGAGAACAACTCCCCCTGCGCTGCCTGCACCACCAGCCTCTTCGCCACCTATTTGACCGGAGAATCCATCGGGAACGTCTCCGGCTGCACCGCCTACCCGTCGATTTACGCCGCCGCGTTTGCCAATCCGTACGGTCCGACCGATCACGGCAACGCCAAGTGCTTCTTTCAGCTCGATTTCACGACGGCCAGCTCCGTGTATCAAAACAACCAGGTGGACATGGACAGAAAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

195

Amino Acids

21.59

Weight (kDa)

4.58

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	2 - 146	2.9e-33	SPARK

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48010
fragaria_vesca	FvH4_2g24291 FvH4_2g24291 FvH4_6g05000 FvH4_6g05020
malus_domestica	MD03G1272600.v1.1 MD04G1211500.v1.1 MD11G1293500.v1.1 MD12G1226500.v1.1
prunus_persica	Prupe.6G332100_v2.0.a1 Prupe.6G332200_v2.0.a1 Prupe.8G248800_v2.0.a1
pyrus_communis	pycom03g21710 pycom11g25970
rosa_chinensis	RchiOBHm_Chr3g0453511 RchiOBHm_Chr3g0453521 RchiOBHm_Chr5g0002211 RchiOBHm_Chr6g0292151
rosa_laevigata	RLG00000012057 RLG00000025506 RLG00000025507 RLG00000031008
rosa_multiflora	Rmu_co8460761.1_g000001 Rmu_sc0000510.1_g000020
rosa_roxburghii	Rroxscaffold_1G00073750 Rroxscaffold_2G00125960 Rroxscaffold_6G00430490 Rroxscaffold_7G00175400
rosa_rugosa	Rorug02G0649700 Rorug02G0649800 Rorug06G0223800
rosa_samantha	Rh1BG359400 Rh3AG052600 Rh3AG052700 Rh3BG054100 Rh3BG054200 Rh3CG053400 Rh3CG053500 Rh3DG054200 Rh3DG054300 Rh6AG337200 Rh6BG344400 Rh6CG351200 Rh6DG337400 Rh7BG191800
rosa_wichuraiana	Rw3G004050 Rw3G004060 Rw6G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	236
AasI	GACNNNNNNGTC	1 cut(s)	200
Acc36I	ACCTGC	1 cut(s)	236
AccB7I	CCANNNNNTGG	1 cut(s)	67
AccII	CGCG	1 cut(s)	467
AciI	CCGC	7 cut(s)	97, 146, 231, 312, 441, 462, 465
AclWI	GGATC	2 cut(s)	10, 257
AcoI	YGGCCR	2 cut(s)	304, 537
AcsI	RAATTY	1 cut(s)	197
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	2 cut(s)	80, 482
AfiI	CCNNNNNNNGG	2 cut(s)	67, 292
AjnI	CCWGG	5 cut(s)	33, 87, 245, 255, 561
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	2 cut(s)	523, 543
AluI	AGCT	2 cut(s)	523, 543
Alw26I	GTCTC	2 cut(s)	233, 433
AlwI	GGATC	2 cut(s)	10, 257
AoxI	GGCC	4 cut(s)	91, 282, 304, 537
ApeKI	GCWGC	4 cut(s)	22, 261, 371, 435
ApoI	RAATTY	1 cut(s)	197
AspLEI	GCGC	2 cut(s)	48, 371
AspS9I	GGNCC	4 cut(s)	91, 283, 295, 485
AsuHPI	GGTGA	3 cut(s)	118, 217, 265
AvaII	GGWCC	2 cut(s)	295, 485
BanII	GRGCYC	1 cut(s)	41
BbvI	GCAGC	4 cut(s)	34, 248, 358, 422
BccI	CCATC	1 cut(s)	425
BceAI	ACGGC	3 cut(s)	337, 514, 552
BciT130I	CCWGG	5 cut(s)	35, 89, 247, 257, 563
BcoDI	GTCTC	2 cut(s)	233, 433
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	20
BfoI	RGCGCY	1 cut(s)	49
BfuAI	ACCTGC	1 cut(s)	236
BisI	GCNGC	7 cut(s)	23, 232, 262, 372, 436, 462, 465
BlsI	GCNGC	7 cut(s)	24, 233, 263, 373, 437, 463, 466
Bme1390I	CCNGG	5 cut(s)	35, 89, 247, 257, 563
Bme18I	GGWCC	2 cut(s)	295, 485
BmgT120I	GGNCC	4 cut(s)	91, 283, 295, 485
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	5 cut(s)	35, 89, 247, 257, 563
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BpmI	CTGGAG	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	5 cut(s)	34, 88, 255, 256, 279
BsaWI	WCCGGW	1 cut(s)	407
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 62, 92
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 292
Bse1I	ACTGG	2 cut(s)	76, 343
BseBI	CCWGG	5 cut(s)	35, 89, 247, 257, 563
BseDI	CCNNGG	5 cut(s)	34, 88, 255, 256, 279
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	2 cut(s)	67, 292
BseNI	ACTGG	2 cut(s)	76, 343
BseXI	GCAGC	4 cut(s)	34, 248, 358, 422
BsgI	GTGCAG	2 cut(s)	361, 421
Bsh1236I	CGCG	1 cut(s)	467
Bsh1285I	CGRYCG	1 cut(s)	492
BshFI	GGCC	4 cut(s)	93, 284, 306, 539
BsiEI	CGRYCG	1 cut(s)	492
BsiSI	CCGG	2 cut(s)	408, 432
BsiWI	CGTACG	1 cut(s)	480
BslI	CCNNNNNNNGG	2 cut(s)	67, 292
BsmAI	GTCTC	2 cut(s)	233, 433
BsmBI	CGTCTC	1 cut(s)	433
BsnI	GGCC	4 cut(s)	93, 284, 306, 539
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	15, 249, 493
BspACI	CCGC	7 cut(s)	97, 146, 231, 312, 441, 462, 465
BspANI	GGCC	4 cut(s)	93, 284, 306, 539
BspFNI	CGCG	1 cut(s)	467
BspLI	GGNNCC	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	24
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	2 cut(s)	10, 257
BspTNI	GGTCTC	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	76, 343
BssECI	CCNNGG	5 cut(s)	34, 88, 255, 256, 279
BssMI	GATC	3 cut(s)	15, 249, 493
BssNI	GRCGYC	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	5 cut(s)	35, 89, 247, 257, 563
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	1 cut(s)	395
BstACI	GRCGYC	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	376, 541
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	1 cut(s)	467
BstH2I	RGCGCY	1 cut(s)	49
BstHHI	GCGC	2 cut(s)	48, 371
BstKTI	GATC	3 cut(s)	18, 252, 496
BstMAI	GTCTC	2 cut(s)	233, 433
BstMBI	GATC	3 cut(s)	15, 249, 493
BstMCI	CGRYCG	1 cut(s)	492
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 228, 375, 384, 470
BstNI	CCWGG	5 cut(s)	35, 89, 247, 257, 563
BstSCI	CCNGG	5 cut(s)	33, 87, 245, 255, 561
BstSFI	CTRYAG	1 cut(s)	20
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	4 cut(s)	34, 248, 358, 422
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BsuRI	GGCC	4 cut(s)	93, 284, 306, 539
BtsCI	GGATG	1 cut(s)	81
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	2 cut(s)	376, 541
CfoI	GCGC	2 cut(s)	48, 371
Cfr13I	GGNCC	4 cut(s)	91, 283, 295, 485
CpoI	CGGWCCG	1 cut(s)	485
CseI	GACGC	1 cut(s)	313
CsiI	ACCWGGT	1 cut(s)	561
Csp6I	GTAC	2 cut(s)	79, 481
CspI	CGGWCCG	1 cut(s)	485
CviAII	CATG	3 cut(s)	67, 265, 571
CviQI	GTAC	2 cut(s)	79, 481
DpnI	GATC	3 cut(s)	17, 251, 495
DpnII	GATC	3 cut(s)	15, 249, 493
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	2 cut(s)	304, 537
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
EciI	GGCGGA	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	41
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	295, 485
EcoO109I	RGGNCCY	2 cut(s)	91, 295
EcoRII	CCWGG	5 cut(s)	33, 87, 245, 255, 561
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	433
FaeI	CATG	3 cut(s)	70, 268, 574
FaiI	YATR	3 cut(s)	68, 266, 572
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FatI	CATG	3 cut(s)	66, 264, 570
FauI	CCCGC	1 cut(s)	153
Fnu4HI	GCNGC	7 cut(s)	23, 232, 262, 372, 436, 462, 465
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	7 cut(s)	23, 232, 262, 372, 436, 462, 465
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	2 cut(s)	47, 370
GluI	GCNGC	7 cut(s)	23, 232, 262, 372, 436, 462, 465
GsuI	CTGGAG	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	49
HaeIII	GGCC	4 cut(s)	93, 284, 306, 539
HapII	CCGG	2 cut(s)	408, 432
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	2 cut(s)	48, 371
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	3 cut(s)	70, 268, 574
Hin6I	GCGC	2 cut(s)	46, 369
HinP1I	GCGC	2 cut(s)	46, 369
HinfI	GANTC	3 cut(s)	107, 161, 413
HpaII	CCGG	2 cut(s)	408, 432
HphI	GGTGA	3 cut(s)	118, 217, 265
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	2 cut(s)	160, 489
Hpy188III	TCNNGA	4 cut(s)	13, 238, 421, 532
Hpy8I	GTNNAC	1 cut(s)	568
Hpy99I	CGWCG	6 cut(s)	107, 206, 305, 329, 454, 538
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	5 cut(s)	22, 264, 339, 378, 438
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 228, 375, 384, 470
HpySE526I	ACGT	1 cut(s)	426
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	3 cut(s)	70, 268, 574
HspAI	GCGC	2 cut(s)	46, 369
Kzo9I	GATC	3 cut(s)	15, 249, 493
LmnI	GCTCC	2 cut(s)	44, 548
Lsp1109I	GCAGC	4 cut(s)	34, 248, 358, 422
MabI	ACCWGGT	1 cut(s)	561
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	1 cut(s)	426
MalI	GATC	3 cut(s)	17, 251, 495
MboI	GATC	3 cut(s)	15, 249, 493
MboII	GAAGA	1 cut(s)	382
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	2 cut(s)	197, 287
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	4 cut(s)	145, 183, 357, 512
MseI	TTAA	1 cut(s)	586
MspI	CCGG	2 cut(s)	408, 432
MspR9I	CCNGG	5 cut(s)	35, 89, 247, 257, 563
MvaI	CCWGG	5 cut(s)	35, 89, 247, 257, 563
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	5 cut(s)	45, 228, 375, 384, 470
NdeII	GATC	3 cut(s)	15, 249, 493
NlaIII	CATG	3 cut(s)	70, 268, 574
NlaIV	GGNNCC	1 cut(s)	40
PaqCI	CACCTGC	1 cut(s)	236
PasI	CCCWGGG	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	2 cut(s)	297, 489
PfeI	GAWTC	2 cut(s)	107, 413
Pfl23II	CGTACG	1 cut(s)	480
PflFI	GACNNNGTC	2 cut(s)	299, 323
PflMI	CCANNNNNTGG	1 cut(s)	67
PfoI	TCCNGGA	1 cut(s)	245
PkrI	GCNGC	7 cut(s)	24, 233, 263, 373, 437, 463, 466
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	295
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	5 cut(s)	33, 87, 245, 255, 561
PspGI	CCWGG	5 cut(s)	33, 87, 245, 255, 561
PspLI	CGTACG	1 cut(s)	480
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	4 cut(s)	91, 283, 295, 485
PspPPI	RGGWCCY	1 cut(s)	295
PstI	CTGCAG	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	249
PsyI	GACNNNGTC	2 cut(s)	299, 323
RsaI	GTAC	2 cut(s)	80, 482
RsaNI	GTAC	2 cut(s)	79, 481
Rsr2I	CGGWCCG	1 cut(s)	485
RsrII	CGGWCCG	1 cut(s)	485
SaqAI	TTAA	1 cut(s)	586
SatI	GCNGC	7 cut(s)	23, 232, 262, 372, 436, 462, 465
Sau3AI	GATC	3 cut(s)	15, 249, 493
Sau96I	GGNCC	4 cut(s)	91, 283, 295, 485
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	5 cut(s)	35, 89, 247, 257, 563
SduI	GDGCHC	1 cut(s)	41
SexAI	ACCWGGT	1 cut(s)	561
SfcI	CTRYAG	1 cut(s)	20
SinI	GGWCC	2 cut(s)	295, 485
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	2 cut(s)	197, 287
SsiI	CCGC	7 cut(s)	97, 146, 231, 312, 441, 462, 465
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	5 cut(s)	33, 87, 245, 255, 561
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	485
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	6 cut(s)	30, 105, 237, 291, 452, 525
TaqII	GACCGA	1 cut(s)	506
TasI	AATT	2 cut(s)	197, 287
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	3 cut(s)	234, 464, 467
TfiI	GAWTC	2 cut(s)	107, 413
Tru1I	TTAA	1 cut(s)	586
Tru9I	TTAA	1 cut(s)	586
TseI	GCWGC	4 cut(s)	22, 261, 371, 435
TspDTI	ATGAA	2 cut(s)	71, 281
TspGWI	ACGGA	2 cut(s)	468, 535
Tth111I	GACNNNGTC	2 cut(s)	299, 323
Van91I	CCANNNNNTGG	1 cut(s)	67
VpaK11BI	GGWCC	2 cut(s)	295, 485
XapI	RAATTY	1 cut(s)	197
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.